Wall clock time and date at job start Tue Mar 31 2020 04:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46728 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46953 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99692 * 0.02562 * 6 5 4 8 8 N 1.34777 * 120.00146 * 180.02562 * 6 5 4 9 9 C 1.47073 * 120.88015 * 359.71688 * 8 6 5 10 10 C 1.53700 * 108.27459 * 128.75651 * 9 8 6 11 11 N 1.46900 * 109.25570 * 54.08553 * 10 9 8 12 12 C 1.46898 * 111.00213 * 172.60510 * 11 10 9 13 13 C 1.50697 * 109.47185 * 294.30305 * 12 11 10 14 14 O 1.21292 * 120.00201 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00107 * 179.97438 * 13 12 11 16 16 C 1.37096 * 120.00290 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99730 * 0.02562 * 16 15 13 18 18 C 1.38944 * 120.00146 * 179.97438 * 16 15 13 19 19 N 1.31418 * 119.99981 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 120.00173 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47084 * 89.99798 * 20 18 16 22 22 H 1.48498 * 109.46993 * 210.00012 * 20 18 16 23 23 H 1.48501 * 109.46542 * 329.99756 * 20 18 16 24 24 C 1.46901 * 111.26597 * 296.75538 * 11 10 9 25 25 C 1.47082 * 120.87841 * 180.02562 * 8 6 5 26 26 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 27 27 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 29 29 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 30 30 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 31 31 H 1.09000 * 109.47187 * 300.00233 * 4 3 2 32 32 H 1.09001 * 109.46558 * 60.00281 * 4 3 2 33 33 H 1.09000 * 109.47486 * 300.00062 * 5 4 3 34 34 H 1.09001 * 109.47362 * 60.00784 * 5 4 3 35 35 H 1.09001 * 109.63240 * 248.52860 * 9 8 6 36 36 H 1.09004 * 109.63279 * 9.11073 * 9 8 6 37 37 H 1.08999 * 109.64944 * 294.08140 * 10 9 8 38 38 H 1.08998 * 109.42183 * 173.94694 * 10 9 8 39 39 H 1.09003 * 109.47023 * 54.30091 * 12 11 10 40 40 H 1.09001 * 109.46886 * 174.29953 * 12 11 10 41 41 H 0.97003 * 120.00022 * 359.97438 * 15 13 12 42 42 H 0.97004 * 119.99892 * 179.97438 * 19 18 16 43 43 H 1.08991 * 109.49457 * 303.14518 * 24 11 10 44 44 H 1.09009 * 109.48889 * 183.06006 * 24 11 10 45 45 H 1.08992 * 109.62867 * 350.88905 * 25 8 6 46 46 H 1.08998 * 109.62977 * 111.47943 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 5.3276 3.0575 -0.0001 7 8 6.0150 2.0583 -0.0001 8 7 5.9072 4.2742 -0.0002 9 6 5.0923 5.4985 -0.0065 10 6 5.5807 6.4085 1.1319 11 7 7.0269 6.6250 0.9924 12 6 7.5044 7.6274 1.9542 13 6 6.9003 8.9679 1.6243 14 8 6.1465 9.0777 0.6804 15 7 7.1976 10.0450 2.3780 16 6 6.6484 11.2647 2.0775 17 1 5.9772 11.3623 1.2370 18 6 6.9545 12.3749 2.8548 19 7 6.4276 13.5440 2.5671 20 14 8.1148 12.2058 4.3090 21 1 9.5098 12.4456 3.8596 22 1 7.7521 13.2008 5.3500 23 1 8.0049 10.8366 4.8733 24 6 7.7701 5.3655 1.1319 25 6 7.3715 4.4129 -0.0008 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9767 0.8908 32 1 3.8339 0.9765 -0.8892 33 1 3.4229 3.4214 -0.8905 34 1 3.4222 3.4225 0.8895 35 1 5.2064 6.0096 -0.9625 36 1 4.0447 5.2420 0.1520 37 1 5.3746 5.9364 2.0925 38 1 5.0628 7.3660 1.0781 39 1 7.2092 7.3338 2.9616 40 1 8.5910 7.6950 1.8992 41 1 7.8001 9.9572 3.1331 42 1 6.6410 14.3190 3.1100 43 1 7.5335 4.9081 2.0924 44 1 8.8401 5.5668 1.0780 45 1 7.8316 3.4382 0.1614 46 1 7.7002 4.8218 -0.9562 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112680957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:06 Heat of formation + Delta-G solvation = -101.617094 kcal Electronic energy + Delta-G solvation = -26069.471912 eV Core-core repulsion = 22187.752533 eV Total energy + Delta-G solvation = -3881.719380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.41557 -38.94014 -38.23112 -37.36375 -34.63059 -33.88479 -32.90055 -31.71976 -31.34567 -30.32362 -28.92256 -25.98633 -24.43487 -23.75622 -23.17503 -23.08399 -21.04979 -19.44042 -18.93897 -18.35384 -17.69035 -16.75922 -16.53128 -16.11209 -15.79121 -15.63199 -15.19399 -15.09535 -14.74769 -14.45135 -14.38499 -14.15496 -13.81336 -13.62895 -13.27068 -13.01593 -12.71434 -12.66711 -12.37861 -12.30084 -12.02805 -11.91111 -11.75273 -11.46460 -11.40591 -11.29598 -11.27778 -11.21010 -10.93379 -10.62943 -10.01478 -9.96986 -9.90886 -9.58004 -8.97613 -8.52525 -8.22279 -8.05174 -6.34856 -3.86436 2.43524 2.66539 2.99301 3.04036 3.12556 3.43396 3.67641 3.82835 4.06844 4.39531 4.60092 4.67423 4.68319 4.75466 4.86355 4.93125 4.97089 5.03875 5.13805 5.16137 5.19285 5.21620 5.30107 5.34801 5.46198 5.49230 5.50857 5.58403 5.59751 5.65466 5.71078 5.77045 5.78391 5.86996 6.04268 6.08899 6.37994 6.86738 6.98276 7.17295 7.27253 7.54152 7.96401 8.10175 8.55649 8.90993 9.38249 9.78029 10.78051 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.002313 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.899566 B =12103.546827 C =12833.363274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.393 6.393 4 C 0.080 3.920 5 C -0.140 4.140 6 C 0.521 3.479 7 O -0.552 6.552 8 N -0.610 5.610 9 C 0.112 3.888 10 C 0.037 3.963 11 N -0.515 5.515 12 C 0.044 3.956 13 C 0.452 3.548 14 O -0.560 6.560 15 N -0.589 5.589 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.880 5.880 20 Si 0.880 3.120 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C 0.041 3.959 25 C 0.118 3.882 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.029 0.971 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.035 0.965 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 -23.711 -1.487 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.312 6.312 4 C 0.003 3.997 5 C -0.180 4.180 6 C 0.309 3.691 7 O -0.430 6.430 8 N -0.344 5.344 9 C -0.011 4.011 10 C -0.091 4.091 11 N -0.240 5.240 12 C -0.088 4.088 13 C 0.237 3.763 14 O -0.442 6.442 15 N -0.229 5.229 16 C -0.433 4.433 17 H 0.138 0.862 18 C -0.162 4.162 19 N -0.520 5.520 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.088 4.088 25 C -0.004 4.004 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.047 0.953 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.106 0.894 45 H 0.112 0.888 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.838 -23.578 -2.550 24.024 hybrid contribution 1.024 -0.260 2.116 2.365 sum -2.814 -23.838 -0.434 24.007 Atomic orbital electron populations 1.21753 0.93652 1.02251 1.03245 1.22446 0.95547 0.83564 1.00214 1.87821 1.21112 1.26750 1.95567 1.22097 0.80672 0.95364 1.01602 1.21504 0.92586 0.98094 1.05809 1.20372 0.90136 0.82796 0.75789 1.90682 1.65368 1.36074 1.50905 1.48249 1.07575 1.05947 1.72624 1.22067 0.94407 0.83872 1.00707 1.22751 0.89034 1.01660 0.95648 1.61493 1.03893 1.07380 1.51226 1.21885 1.00739 0.92298 0.93836 1.19609 0.86226 0.84805 0.85630 1.90517 1.38736 1.84831 1.30135 1.42222 1.43649 1.08875 1.28130 1.19418 1.26213 0.82606 1.15109 0.86210 1.25046 0.97846 0.95091 0.98174 1.69623 1.43228 0.99525 1.39608 0.86676 0.81642 0.78305 0.82774 1.19586 1.20181 1.19565 1.22520 0.99149 0.89962 0.97177 1.21709 0.79535 0.99886 0.99282 0.91779 0.91103 0.91778 0.93333 0.93351 0.92529 0.92474 0.87815 0.87906 0.89674 0.89358 0.95301 0.86499 0.93319 0.89030 0.79714 0.91581 0.94677 0.89446 0.88816 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 2 C 0.06 0.46 6.66 37.16 0.25 0.70 16 3 O -0.39 -4.03 10.34 -35.23 -0.36 -4.39 16 4 C 0.08 0.79 5.23 37.16 0.19 0.99 16 5 C -0.14 -1.34 4.43 -27.88 -0.12 -1.47 16 6 C 0.52 6.34 7.71 -10.98 -0.08 6.25 16 7 O -0.55 -8.27 15.43 5.56 0.09 -8.18 16 8 N -0.61 -7.28 3.00 -172.16 -0.52 -7.80 16 9 C 0.11 1.31 6.53 -3.37 -0.02 1.29 16 10 C 0.04 0.53 5.27 -3.46 -0.02 0.51 16 11 N -0.52 -7.67 4.37 -235.44 -1.03 -8.69 16 12 C 0.04 0.69 5.45 -4.98 -0.03 0.66 16 13 C 0.45 9.71 7.44 -10.99 -0.08 9.62 16 14 O -0.56 -14.01 13.91 5.55 0.08 -13.93 16 15 N -0.59 -13.51 5.09 -10.97 -0.06 -13.57 16 16 C -0.30 -8.36 10.16 -14.94 -0.15 -8.51 16 17 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 18 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 19 N -0.88 -25.24 13.96 55.50 0.77 -24.46 16 20 Si 0.88 18.95 27.74 -169.99 -4.71 14.24 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 24 C 0.04 0.48 5.62 -3.68 -0.02 0.46 16 25 C 0.12 1.38 6.60 -3.58 -0.02 1.35 16 26 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.10 0.88 7.99 -51.93 -0.41 0.46 16 34 H 0.10 0.89 7.67 -51.93 -0.40 0.50 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 0.82 6.02 -51.93 -0.31 0.51 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.12 2.03 5.77 -51.93 -0.30 1.73 16 39 H 0.05 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.09 1.26 7.97 -51.93 -0.41 0.84 16 41 H 0.37 7.47 5.76 -40.82 -0.24 7.23 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.90 7.99 -51.92 -0.41 0.48 16 45 H 0.09 1.09 7.06 -51.93 -0.37 0.72 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -33.14 370.98 -7.46 -40.60 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.48 Total: 8.29 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 0.17 Total: 12.31 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.83 Total: -54.52 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.20 Total: -26.50 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.71 Total: 14.24 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.14 -7.46 -40.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112680957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.019 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds