Wall clock time and date at job start Tue Mar 31 2020 04:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99811 * 2 1 4 4 H 1.08997 * 109.47232 * 329.99954 * 3 2 1 5 5 C 1.53000 * 109.47018 * 89.99807 * 3 2 1 6 6 C 1.53002 * 109.46996 * 209.99988 * 3 2 1 7 7 C 1.50702 * 109.46868 * 65.00037 * 6 3 2 8 8 O 1.21278 * 120.00423 * 359.97438 * 7 6 3 9 9 N 1.34774 * 119.99692 * 180.02562 * 7 6 3 10 10 C 1.47081 * 120.88114 * 0.02562 * 9 7 6 11 11 C 1.53235 * 108.52054 * 231.16282 * 10 9 7 12 12 N 1.46906 * 109.34079 * 306.16959 * 11 10 9 13 13 C 1.46898 * 110.99801 * 187.25100 * 12 11 10 14 14 C 1.50700 * 109.46835 * 170.00134 * 13 12 11 15 15 O 1.21294 * 120.00208 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00122 * 180.02562 * 14 13 12 17 17 C 1.37103 * 120.00012 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99726 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99798 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99902 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99753 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47407 * 89.99940 * 21 19 17 23 23 H 1.48503 * 109.46688 * 210.00221 * 21 19 17 24 24 H 1.48499 * 109.47237 * 329.99772 * 21 19 17 25 25 C 1.46896 * 111.26658 * 63.10656 * 12 11 10 26 26 C 1.47082 * 120.88386 * 179.97438 * 9 7 6 27 27 H 1.09007 * 109.47281 * 299.99750 * 1 2 3 28 28 H 1.08995 * 109.47317 * 59.99922 * 1 2 3 29 29 H 1.09007 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47645 * 299.99995 * 5 3 2 31 31 H 1.09006 * 109.46866 * 60.00216 * 5 3 2 32 32 H 1.09000 * 109.46821 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46797 * 305.00102 * 6 3 2 34 34 H 1.09000 * 109.46880 * 184.99894 * 6 3 2 35 35 H 1.09002 * 109.63012 * 111.45725 * 10 9 7 36 36 H 1.09000 * 109.63054 * 350.86988 * 10 9 7 37 37 H 1.08997 * 109.49554 * 186.21402 * 11 10 9 38 38 H 1.08997 * 109.49382 * 66.13002 * 11 10 9 39 39 H 1.08993 * 109.47768 * 290.00114 * 13 12 11 40 40 H 1.09004 * 109.47075 * 50.00431 * 13 12 11 41 41 H 0.96993 * 119.99826 * 359.97438 * 16 14 13 42 42 H 0.97003 * 119.99632 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.49756 * 56.85119 * 25 12 11 44 44 H 1.08998 * 109.49494 * 176.90931 * 25 12 11 45 45 H 1.09001 * 109.62379 * 9.12792 * 26 9 7 46 46 H 1.08998 * 109.62760 * 248.54863 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7213 7 6 3.1415 0.9236 -2.1733 8 8 2.0186 0.7335 -2.5902 9 7 4.1952 0.8301 -3.0085 10 6 5.5653 1.0551 -2.5233 11 6 6.2463 2.0739 -3.4434 12 7 6.1478 1.6145 -4.8353 13 6 6.9353 2.4731 -5.7300 14 6 7.0128 1.8390 -7.0949 15 8 6.4655 0.7766 -7.3021 16 7 7.6904 2.4525 -8.0855 17 6 7.7613 1.8754 -9.3271 18 1 7.2746 0.9289 -9.5113 19 6 8.4594 2.5081 -10.3484 20 7 9.0511 3.6598 -10.1244 21 14 8.5554 1.7221 -12.0403 22 1 7.4142 2.1882 -12.8682 23 1 9.8317 2.1086 -12.6938 24 1 8.4969 0.2445 -11.9038 25 6 4.7479 1.5405 -5.2741 26 6 4.0056 0.4992 -4.4290 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.2568 1.8015 1.9564 31 1 2.8829 1.0775 1.9563 32 1 2.6613 2.7670 1.4425 33 1 3.9930 0.5052 -0.2617 34 1 3.8426 2.2371 -0.6444 35 1 6.1194 0.1166 -2.5427 36 1 5.5341 1.4444 -1.5057 37 1 7.2959 2.1702 -3.1657 38 1 5.7530 3.0407 -3.3437 39 1 6.4579 3.4497 -5.8097 40 1 7.9411 2.5922 -5.3270 41 1 8.1277 3.3022 -7.9199 42 1 9.5387 4.1013 -10.8373 43 1 4.2754 2.5147 -5.1489 44 1 4.7107 1.2504 -6.3242 45 1 2.9430 0.5209 -4.6713 46 1 4.4099 -0.4926 -4.6310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112681140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:40 Heat of formation + Delta-G solvation = -104.502001 kcal Electronic energy + Delta-G solvation = -26527.603986 eV Core-core repulsion = 22645.759508 eV Total energy + Delta-G solvation = -3881.844478 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.33636 -38.88366 -38.07633 -37.10198 -34.49918 -33.75857 -33.13624 -31.31769 -31.08782 -29.21640 -27.95395 -26.71124 -25.61612 -23.88665 -23.64835 -22.03765 -20.87862 -19.27736 -18.87732 -17.89473 -17.28671 -17.03112 -16.28438 -15.95556 -15.48271 -15.17919 -15.13674 -14.86303 -14.77495 -14.52062 -14.01843 -13.90532 -13.65953 -13.56754 -13.21704 -13.01309 -12.84256 -12.49553 -12.25407 -12.18654 -12.02436 -11.65379 -11.54829 -11.52897 -11.34415 -11.13885 -10.97944 -10.93394 -10.85853 -10.39937 -10.23273 -9.83586 -9.71556 -9.48636 -8.82237 -8.36939 -8.00190 -7.90480 -6.43406 -3.84164 2.63242 2.92919 3.16923 3.25889 3.31763 3.58218 3.86869 3.92208 4.21782 4.30634 4.48379 4.81404 4.85638 4.94363 4.96086 5.06444 5.11763 5.13221 5.19205 5.23190 5.25320 5.32313 5.35980 5.37472 5.45171 5.58858 5.59808 5.65466 5.71702 5.80092 5.81602 5.84354 5.90187 6.16477 6.23512 6.24294 6.56465 7.03143 7.13980 7.30350 7.43600 7.53872 8.04571 8.17317 8.59610 9.16403 9.52331 10.03762 10.74258 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.038171 B = 0.002293 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.368232 B =12206.942582 C =12664.403780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.100 3.900 4 H 0.067 0.933 5 C -0.175 4.175 6 C -0.140 4.140 7 C 0.517 3.483 8 O -0.539 6.539 9 N -0.615 5.615 10 C 0.113 3.887 11 C 0.039 3.961 12 N -0.515 5.515 13 C 0.047 3.953 14 C 0.443 3.557 15 O -0.577 6.577 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C 0.041 3.959 26 C 0.121 3.879 27 H 0.034 0.966 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.034 0.966 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.026 0.974 44 H 0.115 0.885 45 H 0.091 0.909 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.000 0.394 22.095 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.295 6.295 3 C 0.041 3.959 4 H 0.085 0.915 5 C -0.232 4.232 6 C -0.180 4.180 7 C 0.305 3.695 8 O -0.415 6.415 9 N -0.349 5.349 10 C -0.010 4.010 11 C -0.090 4.090 12 N -0.239 5.239 13 C -0.084 4.084 14 C 0.228 3.772 15 O -0.461 6.461 16 N -0.200 5.200 17 C -0.428 4.428 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.088 4.088 26 C -0.001 4.001 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.133 0.867 45 H 0.109 0.891 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.553 -0.948 21.567 23.607 hybrid contribution 0.122 1.379 -0.721 1.560 sum -9.431 0.431 20.846 22.884 Atomic orbital electron populations 1.22692 0.81051 1.02442 0.99666 1.87888 1.19781 1.26935 1.94938 1.21787 0.93614 0.85886 0.94567 0.91463 1.22303 1.02591 1.01643 0.96699 1.21880 0.99029 1.04197 0.92870 1.20492 0.84370 0.76797 0.87862 1.90670 1.23083 1.50096 1.77697 1.48269 1.06515 1.69828 1.10288 1.21850 0.82021 1.00064 0.97074 1.22501 1.01020 0.95968 0.89532 1.61509 1.10973 1.51062 1.00405 1.21847 0.98719 0.94192 0.93680 1.19719 0.84636 0.87348 0.85488 1.90488 1.49699 1.23228 1.82726 1.41874 1.46599 1.21885 1.09652 1.19698 1.31153 1.06078 0.85851 0.87875 1.25267 0.96556 0.95965 1.00191 1.69612 1.34609 1.15739 1.34356 0.85855 0.77526 0.79494 0.81411 1.20428 1.20939 1.19385 1.22662 0.86765 0.96998 1.02327 1.21728 1.01180 0.98969 0.78243 0.94733 0.93546 0.90033 0.92199 0.91624 0.91488 0.88017 0.87820 0.90241 0.89680 0.89470 0.94742 0.93479 0.89197 0.77504 0.91875 0.95615 0.86719 0.89060 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.82 101.05 1.09 1.45 16 2 O -0.38 -4.43 9.58 -49.66 -0.48 -4.90 16 3 C 0.10 0.94 2.27 -26.73 -0.06 0.88 16 4 H 0.07 0.68 7.60 -51.93 -0.39 0.29 16 5 C -0.17 -1.16 9.53 37.16 0.35 -0.80 16 6 C -0.14 -1.24 3.78 -27.88 -0.11 -1.35 16 7 C 0.52 6.74 7.59 -10.99 -0.08 6.66 16 8 O -0.54 -8.93 14.87 -8.87 -0.13 -9.06 16 9 N -0.61 -7.87 3.01 -172.43 -0.52 -8.39 16 10 C 0.11 1.13 6.50 -3.60 -0.02 1.11 16 11 C 0.04 0.44 5.62 -3.70 -0.02 0.42 16 12 N -0.51 -8.16 4.37 -235.74 -1.03 -9.19 16 13 C 0.05 0.80 5.45 -4.98 -0.03 0.77 16 14 C 0.44 10.15 7.44 -10.98 -0.08 10.07 16 15 O -0.58 -15.09 13.91 5.55 0.08 -15.01 16 16 N -0.56 -14.00 5.29 -10.96 -0.06 -14.06 16 17 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 18 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 21 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.04 0.67 5.26 -3.68 -0.02 0.65 16 26 C 0.12 1.82 6.60 -3.58 -0.02 1.79 16 27 H 0.03 0.26 7.87 -51.93 -0.41 -0.15 16 28 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.79 8.00 -51.93 -0.42 0.38 16 34 H 0.10 0.65 7.66 -51.93 -0.40 0.25 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.57 6.02 -51.93 -0.31 0.25 16 37 H 0.09 0.84 7.99 -51.93 -0.41 0.43 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.09 1.36 7.97 -51.93 -0.41 0.95 16 41 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.11 2.26 5.76 -51.93 -0.30 1.96 16 45 H 0.09 1.42 7.06 -51.93 -0.37 1.05 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -33.41 371.35 -7.55 -40.96 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -7.47 Total: 7.93 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 0.76 Total: 13.80 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.88 Total: -55.22 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.53 Total: -28.97 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.41 -7.55 -40.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112681140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.544 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds