Wall clock time and date at job start Tue Mar 31 2020 04:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99811 * 2 1 4 4 H 1.08997 * 109.47232 * 329.99954 * 3 2 1 5 5 C 1.53000 * 109.47018 * 89.99807 * 3 2 1 6 6 C 1.53002 * 109.46996 * 209.99988 * 3 2 1 7 7 C 1.50702 * 109.46868 * 65.00037 * 6 3 2 8 8 O 1.21278 * 120.00423 * 359.97438 * 7 6 3 9 9 N 1.34774 * 119.99692 * 180.02562 * 7 6 3 10 10 C 1.47081 * 120.88114 * 0.02562 * 9 7 6 11 11 C 1.53235 * 108.52054 * 231.16282 * 10 9 7 12 12 N 1.46906 * 109.34079 * 306.16959 * 11 10 9 13 13 C 1.46898 * 110.99801 * 187.25100 * 12 11 10 14 14 C 1.50700 * 109.46835 * 170.00134 * 13 12 11 15 15 O 1.21294 * 120.00208 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00122 * 180.02562 * 14 13 12 17 17 C 1.37103 * 120.00012 * 179.97438 * 16 14 13 18 18 H 1.08005 * 119.99726 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99798 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99902 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99753 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47407 * 89.99940 * 21 19 17 23 23 H 1.48503 * 109.46688 * 210.00221 * 21 19 17 24 24 H 1.48499 * 109.47237 * 329.99772 * 21 19 17 25 25 C 1.46896 * 111.26658 * 63.10656 * 12 11 10 26 26 C 1.47082 * 120.88386 * 179.97438 * 9 7 6 27 27 H 1.09007 * 109.47281 * 299.99750 * 1 2 3 28 28 H 1.08995 * 109.47317 * 59.99922 * 1 2 3 29 29 H 1.09007 * 109.47222 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47645 * 299.99995 * 5 3 2 31 31 H 1.09006 * 109.46866 * 60.00216 * 5 3 2 32 32 H 1.09000 * 109.46821 * 179.97438 * 5 3 2 33 33 H 1.09000 * 109.46797 * 305.00102 * 6 3 2 34 34 H 1.09000 * 109.46880 * 184.99894 * 6 3 2 35 35 H 1.09002 * 109.63012 * 111.45725 * 10 9 7 36 36 H 1.09000 * 109.63054 * 350.86988 * 10 9 7 37 37 H 1.08997 * 109.49554 * 186.21402 * 11 10 9 38 38 H 1.08997 * 109.49382 * 66.13002 * 11 10 9 39 39 H 1.08993 * 109.47768 * 290.00114 * 13 12 11 40 40 H 1.09004 * 109.47075 * 50.00431 * 13 12 11 41 41 H 0.96993 * 119.99826 * 359.97438 * 16 14 13 42 42 H 0.97003 * 119.99632 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.49756 * 56.85119 * 25 12 11 44 44 H 1.08998 * 109.49494 * 176.90931 * 25 12 11 45 45 H 1.09001 * 109.62379 * 9.12792 * 26 9 7 46 46 H 1.08998 * 109.62760 * 248.54863 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5138 5 6 2.2176 1.7714 1.4425 6 6 3.3589 1.2633 -0.7213 7 6 3.1415 0.9236 -2.1733 8 8 2.0186 0.7335 -2.5902 9 7 4.1952 0.8301 -3.0085 10 6 5.5653 1.0551 -2.5233 11 6 6.2463 2.0739 -3.4434 12 7 6.1478 1.6145 -4.8353 13 6 6.9353 2.4731 -5.7300 14 6 7.0128 1.8390 -7.0949 15 8 6.4655 0.7766 -7.3021 16 7 7.6904 2.4525 -8.0855 17 6 7.7613 1.8754 -9.3271 18 1 7.2746 0.9289 -9.5113 19 6 8.4594 2.5081 -10.3484 20 7 9.0511 3.6598 -10.1244 21 14 8.5554 1.7221 -12.0403 22 1 7.4142 2.1882 -12.8682 23 1 9.8317 2.1086 -12.6938 24 1 8.4969 0.2445 -11.9038 25 6 4.7479 1.5405 -5.2741 26 6 4.0056 0.4992 -4.4290 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.2568 1.8015 1.9564 31 1 2.8829 1.0775 1.9563 32 1 2.6613 2.7670 1.4425 33 1 3.9930 0.5052 -0.2617 34 1 3.8426 2.2371 -0.6444 35 1 6.1194 0.1166 -2.5427 36 1 5.5341 1.4444 -1.5057 37 1 7.2959 2.1702 -3.1657 38 1 5.7530 3.0407 -3.3437 39 1 6.4579 3.4497 -5.8097 40 1 7.9411 2.5922 -5.3270 41 1 8.1277 3.3022 -7.9199 42 1 9.5387 4.1013 -10.8373 43 1 4.2754 2.5147 -5.1489 44 1 4.7107 1.2504 -6.3242 45 1 2.9430 0.5209 -4.6713 46 1 4.4099 -0.4926 -4.6310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112681140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:39 Heat of formation + Delta-G solvation = -129.623254 kcal Electronic energy + Delta-G solvation = -26528.693326 eV Core-core repulsion = 22645.759508 eV Total energy + Delta-G solvation = -3882.933818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.37221 -40.32780 -39.15966 -38.31798 -36.06139 -35.36256 -33.89220 -33.26289 -32.16752 -30.36246 -28.84549 -27.51403 -27.15589 -25.43031 -24.70823 -22.88540 -21.85181 -21.03706 -19.95240 -19.80773 -18.24496 -17.83978 -17.72193 -17.14747 -16.60654 -16.48261 -16.33383 -16.12058 -15.88455 -15.75878 -15.37997 -15.30886 -15.25644 -14.58235 -14.27803 -13.93582 -13.78886 -13.53315 -13.41453 -13.23532 -13.01460 -12.91387 -12.88339 -12.70968 -12.43545 -12.38948 -12.24666 -12.23559 -12.15073 -12.06816 -11.62338 -11.45333 -10.81261 -10.51122 -10.31642 -9.99524 -9.73711 -9.19993 -8.45969 -5.94000 1.37694 1.41653 1.54033 1.66258 1.95325 2.07096 2.28811 2.74967 2.90286 3.21081 3.36851 3.50054 3.82506 3.92884 4.01022 4.12171 4.21878 4.24232 4.28826 4.36796 4.46120 4.47629 4.50918 4.53476 4.58266 4.61535 4.62664 4.72956 4.76775 4.83472 4.85941 4.89578 4.92338 5.05418 5.09403 5.34235 5.41896 5.45043 5.82379 6.03631 6.17841 6.31966 6.47478 6.61990 7.14415 7.18752 7.58233 8.14248 8.71360 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.038171 B = 0.002293 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.368232 B =12206.942582 C =12664.403780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.403 6.403 3 C 0.092 3.908 4 H 0.052 0.948 5 C -0.166 4.166 6 C -0.132 4.132 7 C 0.509 3.491 8 O -0.583 6.583 9 N -0.615 5.615 10 C 0.112 3.888 11 C 0.037 3.963 12 N -0.533 5.533 13 C 0.060 3.940 14 C 0.440 3.560 15 O -0.614 6.614 16 N -0.575 5.575 17 C -0.330 4.330 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.274 1.274 25 C 0.051 3.949 26 C 0.129 3.871 27 H 0.055 0.945 28 H 0.029 0.971 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.140 0.860 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.046 0.954 39 H 0.065 0.935 40 H 0.119 0.881 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.029 0.971 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.807 1.586 24.599 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.323 6.323 3 C 0.034 3.966 4 H 0.070 0.930 5 C -0.224 4.224 6 C -0.171 4.171 7 C 0.299 3.701 8 O -0.463 6.463 9 N -0.349 5.349 10 C -0.010 4.010 11 C -0.090 4.090 12 N -0.258 5.258 13 C -0.071 4.071 14 C 0.227 3.773 15 O -0.500 6.500 16 N -0.213 5.213 17 C -0.460 4.460 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.077 4.077 26 C 0.006 3.994 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.139 0.861 34 H 0.158 0.842 35 H 0.096 0.904 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.332 0.271 24.112 25.513 hybrid contribution -0.293 0.982 -1.453 1.778 sum -8.625 1.253 22.660 24.278 Atomic orbital electron populations 1.22741 0.80438 1.02923 0.99835 1.87838 1.20676 1.28591 1.95168 1.21991 0.93488 0.84750 0.96375 0.92970 1.22238 1.02989 1.02744 0.94389 1.21994 0.99394 1.06591 0.89162 1.21358 0.83562 0.75671 0.89484 1.90655 1.24938 1.51985 1.78755 1.48368 1.08036 1.69468 1.09016 1.22129 0.79969 1.00043 0.98882 1.22699 1.03127 0.96708 0.86509 1.61469 1.10000 1.51757 1.02556 1.21728 1.00832 0.94206 0.90327 1.20836 0.82519 0.86691 0.87233 1.90472 1.50633 1.25085 1.83855 1.41941 1.47551 1.22231 1.09531 1.19627 1.32542 1.05986 0.87799 0.90425 1.26004 0.95773 0.96385 1.03176 1.69667 1.34664 1.16306 1.35489 0.84958 0.78061 0.78255 0.77256 1.19817 1.19519 1.19867 1.22384 0.87852 0.97252 1.00250 1.21387 0.99932 0.97844 0.80248 0.92613 0.95259 0.89516 0.92178 0.91095 0.89407 0.86139 0.84192 0.90355 0.85118 0.86763 0.93572 0.91755 0.86274 0.77000 0.91358 0.95283 0.90874 0.90506 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.82 113.37 1.23 1.92 16 2 O -0.40 -9.12 9.58 -135.19 -1.30 -10.42 16 3 C 0.09 1.55 2.27 30.60 0.07 1.62 16 4 H 0.05 1.02 7.60 -2.39 -0.02 1.00 16 5 C -0.17 -1.66 9.53 71.98 0.69 -0.97 16 6 C -0.13 -1.90 3.78 29.85 0.11 -1.79 16 7 C 0.51 12.61 7.59 87.66 0.67 13.28 16 8 O -0.58 -19.68 14.87 10.77 0.16 -19.52 16 9 N -0.62 -14.87 3.01 -817.85 -2.46 -17.33 16 10 C 0.11 1.83 6.50 86.35 0.56 2.39 16 11 C 0.04 0.71 5.62 86.38 0.49 1.20 16 12 N -0.53 -16.14 4.37 -899.75 -3.93 -20.08 16 13 C 0.06 1.96 5.45 85.56 0.47 2.43 16 14 C 0.44 20.48 7.44 87.66 0.65 21.13 16 15 O -0.61 -33.41 13.91 -3.07 -0.04 -33.45 16 16 N -0.57 -29.10 5.29 -306.97 -1.62 -30.73 16 17 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 18 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 19 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 20 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 21 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C 0.05 1.72 5.26 86.40 0.45 2.17 16 26 C 0.13 4.00 6.60 86.36 0.57 4.57 16 27 H 0.06 0.77 7.87 -2.38 -0.02 0.75 16 28 H 0.03 0.63 8.08 -2.39 -0.02 0.61 16 29 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.06 0.60 7.87 -2.39 -0.02 0.58 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.12 1.35 8.00 -2.39 -0.02 1.33 16 34 H 0.14 1.00 7.66 -2.39 -0.02 0.98 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.13 0.98 6.02 -2.39 -0.01 0.97 16 37 H 0.11 1.62 7.99 -2.39 -0.02 1.60 16 38 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 40 H 0.12 3.23 7.97 -2.39 -0.02 3.21 16 41 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 42 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 3.06 5.76 -2.39 -0.01 3.05 16 45 H 0.08 2.56 7.06 -2.39 -0.02 2.54 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -76.55 371.35 0.59 -75.96 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.25 Total: 29.71 kcal Atomic # 6 Polarization: 22.62 SS G_CDS: 7.23 Total: 29.85 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -7.73 Total: -117.22 kcal Atomic # 8 Polarization: -62.22 SS G_CDS: -1.18 Total: -63.39 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.55 0.59 -75.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112681140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.663 kcal (2) G-P(sol) polarization free energy of solvation -76.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds