Wall clock time and date at job start Tue Mar 31 2020 04:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00119 * 2 1 4 4 C 1.52993 * 109.47470 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47205 * 305.00249 * 4 3 2 6 6 C 1.53004 * 109.46844 * 64.99625 * 4 3 2 7 7 C 1.50693 * 109.47464 * 184.99764 * 4 3 2 8 8 O 1.21286 * 119.99973 * 334.33293 * 7 4 3 9 9 N 1.34775 * 120.00305 * 154.33099 * 7 4 3 10 10 C 1.47075 * 120.87839 * 5.01970 * 9 7 4 11 11 C 1.53701 * 108.27560 * 128.75834 * 10 9 7 12 12 N 1.46898 * 109.25588 * 54.08133 * 11 10 9 13 13 C 1.46902 * 110.99758 * 172.60917 * 12 11 10 14 14 C 1.50701 * 109.46976 * 294.30082 * 13 12 11 15 15 O 1.21288 * 120.00222 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99674 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99662 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00360 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99903 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00312 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99989 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47230 * 90.00013 * 21 19 17 23 23 H 1.48503 * 109.47356 * 210.00017 * 21 19 17 24 24 H 1.48496 * 109.47248 * 330.00211 * 21 19 17 25 25 C 1.46895 * 111.27130 * 296.75630 * 12 11 10 26 26 C 1.47080 * 120.88440 * 185.30065 * 9 7 4 27 27 H 1.08998 * 109.47518 * 300.00368 * 1 2 3 28 28 H 1.09005 * 109.47022 * 60.00773 * 1 2 3 29 29 H 1.09005 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46645 * 299.99797 * 3 2 1 31 31 H 1.09004 * 109.47051 * 59.99560 * 3 2 1 32 32 H 1.09000 * 109.47194 * 54.95914 * 6 4 3 33 33 H 1.08999 * 109.47136 * 174.95202 * 6 4 3 34 34 H 1.08994 * 109.47365 * 294.95439 * 6 4 3 35 35 H 1.09005 * 109.63075 * 248.52303 * 10 9 7 36 36 H 1.08997 * 109.63260 * 9.10383 * 10 9 7 37 37 H 1.09000 * 109.64650 * 294.07561 * 11 10 9 38 38 H 1.09003 * 109.41942 * 173.94973 * 11 10 9 39 39 H 1.09004 * 109.46923 * 54.30182 * 13 12 11 40 40 H 1.09001 * 109.47199 * 174.30011 * 13 12 11 41 41 H 0.96994 * 120.00106 * 0.02562 * 16 14 13 42 42 H 0.96999 * 120.00595 * 180.02562 * 20 19 17 43 43 H 1.09009 * 109.49028 * 303.14907 * 25 12 11 44 44 H 1.08992 * 109.49468 * 183.06722 * 25 12 11 45 45 H 1.08999 * 109.62367 * 350.89512 * 26 9 7 46 46 H 1.09001 * 109.62765 * 111.47079 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5364 -1.3064 7 6 4.1479 2.5560 0.1244 8 8 3.5327 3.5311 -0.2519 9 7 5.3792 2.6989 0.6533 10 6 6.1865 1.5238 1.0147 11 6 7.5742 1.6761 0.3716 12 7 8.1505 2.9692 0.7634 13 6 9.5450 3.0814 0.3155 14 6 10.3898 2.0684 1.0444 15 8 9.8802 1.3258 1.8568 16 7 11.7114 1.9871 0.7929 17 6 12.4800 1.0659 1.4565 18 1 12.0264 0.4052 2.1804 19 6 13.8426 0.9823 1.1976 20 7 14.5793 0.0991 1.8332 21 14 14.6273 2.1256 -0.0540 22 1 15.0848 3.3642 0.6254 23 1 15.7895 1.4481 -0.6831 24 1 13.6317 2.4734 -1.0994 25 6 7.3435 4.0875 0.2574 26 6 5.9489 4.0340 0.8902 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8463 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 3.6049 1.1035 -2.1510 33 1 5.0855 0.5318 -1.3454 34 1 3.6266 -0.4879 -1.3540 35 1 6.2863 1.4673 2.0987 36 1 5.7054 0.6200 0.6410 37 1 7.4819 1.6328 -0.7136 38 1 8.2229 0.8699 0.7142 39 1 9.5983 2.8945 -0.7571 40 1 9.9155 4.0842 0.5284 41 1 12.1189 2.5807 0.1430 42 1 15.5306 0.0409 1.6528 43 1 7.2544 4.0106 -0.8263 44 1 7.8249 5.0302 0.5172 45 1 5.3105 4.7906 0.4339 46 1 6.0261 4.2142 1.9624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112690669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:19 Heat of formation + Delta-G solvation = -97.191926 kcal Electronic energy + Delta-G solvation = -26693.176666 eV Core-core repulsion = 22811.649176 eV Total energy + Delta-G solvation = -3881.527490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58801 -38.98582 -38.13649 -37.33713 -34.70651 -34.05761 -33.68369 -31.71879 -31.04457 -29.03160 -27.69102 -26.24728 -25.78169 -24.16329 -23.75588 -22.71018 -20.85362 -19.43822 -18.79084 -18.34399 -17.76670 -16.55405 -16.27293 -15.99643 -15.95920 -15.39396 -15.20667 -15.09874 -14.99075 -14.57036 -14.40414 -14.00678 -13.80227 -13.66752 -13.23973 -13.01048 -12.77456 -12.55344 -12.42231 -12.30329 -11.92740 -11.87497 -11.71368 -11.59231 -11.37292 -11.27435 -11.23765 -11.15080 -10.92306 -10.62782 -10.01307 -9.99817 -9.81755 -9.57753 -8.96565 -8.51944 -8.22113 -8.04646 -6.34655 -3.86225 2.40970 2.69671 2.99481 3.04195 3.12712 3.52326 3.68040 3.83856 4.07030 4.29541 4.55475 4.62113 4.67084 4.87680 4.94275 4.98462 5.02094 5.07574 5.15882 5.16471 5.21006 5.28356 5.33223 5.34527 5.38322 5.43855 5.53878 5.59553 5.64715 5.67151 5.71790 5.78477 5.87147 5.92431 6.07214 6.09387 6.38986 6.80289 6.98833 7.17752 7.28052 7.54358 7.97096 8.10372 8.55871 8.91200 9.38459 9.78264 10.78264 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.027091 B = 0.002541 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.319746 B =11015.075258 C =11561.082774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.081 3.919 4 C -0.111 4.111 5 H 0.104 0.896 6 C -0.139 4.139 7 C 0.525 3.475 8 O -0.549 6.549 9 N -0.609 5.609 10 C 0.110 3.890 11 C 0.038 3.962 12 N -0.515 5.515 13 C 0.044 3.956 14 C 0.452 3.548 15 O -0.560 6.560 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.880 5.880 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.041 3.959 26 C 0.118 3.882 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.370 0.630 42 H 0.274 0.726 43 H 0.035 0.965 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.580 4.946 -6.734 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C 0.004 3.996 4 C -0.132 4.132 5 H 0.122 0.878 6 C -0.196 4.196 7 C 0.313 3.687 8 O -0.427 6.427 9 N -0.342 5.342 10 C -0.012 4.012 11 C -0.090 4.090 12 N -0.240 5.240 13 C -0.088 4.088 14 C 0.237 3.763 15 O -0.442 6.442 16 N -0.229 5.229 17 C -0.433 4.433 18 H 0.138 0.862 19 C -0.162 4.162 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.088 4.088 26 C -0.005 4.005 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.105 0.895 45 H 0.112 0.888 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.916 4.714 -5.826 23.162 hybrid contribution 0.829 1.062 -1.802 2.250 sum -21.087 5.776 -7.628 23.156 Atomic orbital electron populations 1.22734 0.80721 1.02765 1.00108 1.87820 1.19871 1.27752 1.95514 1.22231 0.91526 0.84367 1.01453 1.21206 0.95119 0.94763 1.02140 0.87839 1.21719 1.01508 1.01630 0.94766 1.20369 0.81043 0.90687 0.76601 1.90673 1.61794 1.41068 1.49210 1.48232 1.15822 1.08213 1.61960 1.22106 0.90432 0.87175 1.01528 1.22743 0.95570 0.93883 0.96787 1.61493 1.00700 1.01882 1.59885 1.21887 0.88934 1.00513 0.97434 1.19609 0.82545 0.87330 0.86768 1.90516 1.71773 1.45167 1.36748 1.42223 1.07431 1.34558 1.38685 1.19417 0.89903 1.13218 1.20794 0.86210 1.25045 0.96064 0.97231 0.97824 1.69615 1.06907 1.34097 1.41369 0.86678 0.79978 0.81310 0.81440 1.19588 1.20183 1.19564 1.22505 0.93715 0.95374 0.97203 1.21711 0.93153 0.84260 1.01337 0.94033 0.94007 0.89493 0.92071 0.92924 0.92074 0.91902 0.90460 0.89755 0.89244 0.95315 0.86497 0.93319 0.89033 0.79715 0.91579 0.94658 0.89462 0.88813 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.89 10.33 -35.23 -0.36 -4.26 16 3 C 0.08 0.82 4.77 37.15 0.18 1.00 16 4 C -0.11 -1.13 2.10 -91.78 -0.19 -1.32 16 5 H 0.10 0.97 6.78 -51.93 -0.35 0.62 16 6 C -0.14 -1.29 8.73 37.16 0.32 -0.96 16 7 C 0.52 6.55 6.80 -10.99 -0.07 6.48 16 8 O -0.55 -8.35 15.66 5.55 0.09 -8.26 16 9 N -0.61 -7.38 3.00 -172.18 -0.52 -7.90 16 10 C 0.11 1.31 6.15 -3.36 -0.02 1.29 16 11 C 0.04 0.55 5.27 -3.46 -0.02 0.53 16 12 N -0.51 -7.68 4.37 -235.46 -1.03 -8.71 16 13 C 0.04 0.69 5.45 -4.97 -0.03 0.66 16 14 C 0.45 9.71 7.44 -10.98 -0.08 9.63 16 15 O -0.56 -14.01 13.91 5.55 0.08 -13.93 16 16 N -0.59 -13.52 5.09 -10.96 -0.06 -13.58 16 17 C -0.30 -8.36 10.16 -14.93 -0.15 -8.51 16 18 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 19 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -25.24 13.96 55.50 0.77 -24.47 16 21 Si 0.88 18.96 27.74 -169.99 -4.71 14.25 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 25 C 0.04 0.49 5.62 -3.70 -0.02 0.47 16 26 C 0.12 1.38 6.61 -3.60 -0.02 1.36 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.58 7.20 -51.93 -0.37 0.20 16 34 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.09 0.88 4.94 -51.93 -0.26 0.63 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.12 2.04 5.76 -51.93 -0.30 1.74 16 39 H 0.05 0.70 8.12 -51.93 -0.42 0.27 16 40 H 0.09 1.26 7.97 -51.93 -0.41 0.84 16 41 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 43 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 44 H 0.09 0.90 7.99 -51.93 -0.41 0.48 16 45 H 0.09 1.10 7.04 -51.93 -0.37 0.73 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -32.99 366.92 -6.63 -39.62 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.32 Total: 8.72 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 0.91 Total: 12.99 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.83 Total: -54.66 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.20 Total: -26.45 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -4.71 Total: 14.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.99 -6.63 -39.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112690669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.575 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds