Wall clock time and date at job start Tue Mar 31 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00119 * 2 1 4 4 C 1.52993 * 109.47470 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47205 * 305.00249 * 4 3 2 6 6 C 1.53004 * 109.46844 * 64.99625 * 4 3 2 7 7 C 1.50693 * 109.47464 * 184.99764 * 4 3 2 8 8 O 1.21286 * 119.99973 * 334.33293 * 7 4 3 9 9 N 1.34775 * 120.00305 * 154.33099 * 7 4 3 10 10 C 1.47075 * 120.87839 * 5.01970 * 9 7 4 11 11 C 1.53701 * 108.27560 * 128.75834 * 10 9 7 12 12 N 1.46898 * 109.25588 * 54.08133 * 11 10 9 13 13 C 1.46902 * 110.99758 * 172.60917 * 12 11 10 14 14 C 1.50701 * 109.46976 * 294.30082 * 13 12 11 15 15 O 1.21288 * 120.00222 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99674 * 179.97438 * 14 13 12 17 17 C 1.37099 * 119.99662 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00360 * 0.02562 * 17 16 14 19 19 C 1.38950 * 119.99903 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00312 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99989 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47230 * 90.00013 * 21 19 17 23 23 H 1.48503 * 109.47356 * 210.00017 * 21 19 17 24 24 H 1.48496 * 109.47248 * 330.00211 * 21 19 17 25 25 C 1.46895 * 111.27130 * 296.75630 * 12 11 10 26 26 C 1.47080 * 120.88440 * 185.30065 * 9 7 4 27 27 H 1.08998 * 109.47518 * 300.00368 * 1 2 3 28 28 H 1.09005 * 109.47022 * 60.00773 * 1 2 3 29 29 H 1.09005 * 109.47216 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46645 * 299.99797 * 3 2 1 31 31 H 1.09004 * 109.47051 * 59.99560 * 3 2 1 32 32 H 1.09000 * 109.47194 * 54.95914 * 6 4 3 33 33 H 1.08999 * 109.47136 * 174.95202 * 6 4 3 34 34 H 1.08994 * 109.47365 * 294.95439 * 6 4 3 35 35 H 1.09005 * 109.63075 * 248.52303 * 10 9 7 36 36 H 1.08997 * 109.63260 * 9.10383 * 10 9 7 37 37 H 1.09000 * 109.64650 * 294.07561 * 11 10 9 38 38 H 1.09003 * 109.41942 * 173.94973 * 11 10 9 39 39 H 1.09004 * 109.46923 * 54.30182 * 13 12 11 40 40 H 1.09001 * 109.47199 * 174.30011 * 13 12 11 41 41 H 0.96994 * 120.00106 * 0.02562 * 16 14 13 42 42 H 0.96999 * 120.00595 * 180.02562 * 20 19 17 43 43 H 1.09009 * 109.49028 * 303.14907 * 25 12 11 44 44 H 1.08992 * 109.49468 * 183.06722 * 25 12 11 45 45 H 1.08999 * 109.62367 * 350.89512 * 26 9 7 46 46 H 1.09001 * 109.62765 * 111.47079 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5685 0.8427 6 6 3.9962 0.5364 -1.3064 7 6 4.1479 2.5560 0.1244 8 8 3.5327 3.5311 -0.2519 9 7 5.3792 2.6989 0.6533 10 6 6.1865 1.5238 1.0147 11 6 7.5742 1.6761 0.3716 12 7 8.1505 2.9692 0.7634 13 6 9.5450 3.0814 0.3155 14 6 10.3898 2.0684 1.0444 15 8 9.8802 1.3258 1.8568 16 7 11.7114 1.9871 0.7929 17 6 12.4800 1.0659 1.4565 18 1 12.0264 0.4052 2.1804 19 6 13.8426 0.9823 1.1976 20 7 14.5793 0.0991 1.8332 21 14 14.6273 2.1256 -0.0540 22 1 15.0848 3.3642 0.6254 23 1 15.7895 1.4481 -0.6831 24 1 13.6317 2.4734 -1.0994 25 6 7.3435 4.0875 0.2574 26 6 5.9489 4.0340 0.8902 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8463 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 3.6049 1.1035 -2.1510 33 1 5.0855 0.5318 -1.3454 34 1 3.6266 -0.4879 -1.3540 35 1 6.2863 1.4673 2.0987 36 1 5.7054 0.6200 0.6410 37 1 7.4819 1.6328 -0.7136 38 1 8.2229 0.8699 0.7142 39 1 9.5983 2.8945 -0.7571 40 1 9.9155 4.0842 0.5284 41 1 12.1189 2.5807 0.1430 42 1 15.5306 0.0409 1.6528 43 1 7.2544 4.0106 -0.8263 44 1 7.8249 5.0302 0.5172 45 1 5.3105 4.7906 0.4339 46 1 6.0261 4.2142 1.9624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112690669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:18 Heat of formation + Delta-G solvation = -123.176931 kcal Electronic energy + Delta-G solvation = -26694.303461 eV Core-core repulsion = 22811.649176 eV Total energy + Delta-G solvation = -3882.654284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.58832 -40.45798 -39.08576 -38.48667 -36.09721 -35.56114 -34.66901 -33.71908 -32.03362 -30.28876 -28.35427 -27.54328 -26.68501 -25.50520 -24.93212 -23.71551 -21.82417 -21.25276 -20.23854 -19.69933 -18.69888 -17.78461 -17.34549 -16.97478 -16.88050 -16.73529 -16.46730 -16.26184 -15.94789 -15.76681 -15.52538 -15.39550 -14.99723 -14.77792 -14.59726 -14.33707 -13.98524 -13.90440 -13.44840 -13.31929 -13.15874 -12.99651 -12.80165 -12.46914 -12.41519 -12.37744 -12.29662 -12.23515 -12.16086 -11.95926 -11.90060 -11.43940 -10.83922 -10.66426 -10.40283 -10.20852 -9.81624 -9.22552 -8.38673 -5.98789 1.31524 1.36907 1.44102 1.45411 1.77842 1.98631 2.24582 2.57874 2.80235 3.16277 3.21509 3.43724 3.75717 3.83122 3.92765 3.98202 4.09264 4.18041 4.23084 4.27194 4.34422 4.43950 4.46837 4.48798 4.49346 4.58380 4.61531 4.63657 4.71884 4.77936 4.84955 4.86525 4.91243 4.93141 5.03476 5.23027 5.38550 5.54980 5.84737 6.00049 6.11399 6.12807 6.30261 6.62335 6.91668 6.99736 7.43239 7.99782 8.78728 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.027091 B = 0.002541 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.319746 B =11015.075258 C =11561.082774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.086 3.914 4 C -0.109 4.109 5 H 0.113 0.887 6 C -0.133 4.133 7 C 0.526 3.474 8 O -0.577 6.577 9 N -0.608 5.608 10 C 0.118 3.882 11 C 0.041 3.959 12 N -0.535 5.535 13 C 0.055 3.945 14 C 0.453 3.547 15 O -0.601 6.601 16 N -0.593 5.593 17 C -0.323 4.323 18 H 0.058 0.942 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.963 3.037 22 H -0.258 1.258 23 H -0.278 1.278 24 H -0.232 1.232 25 C 0.048 3.952 26 C 0.116 3.884 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.388 0.612 42 H 0.278 0.722 43 H 0.041 0.959 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.318 7.051 -8.997 25.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.008 3.992 4 C -0.130 4.130 5 H 0.131 0.869 6 C -0.191 4.191 7 C 0.315 3.685 8 O -0.458 6.458 9 N -0.341 5.341 10 C -0.004 4.004 11 C -0.087 4.087 12 N -0.260 5.260 13 C -0.076 4.076 14 C 0.241 3.759 15 O -0.485 6.485 16 N -0.235 5.235 17 C -0.452 4.452 18 H 0.076 0.924 19 C -0.215 4.215 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.183 1.183 23 H -0.203 1.203 24 H -0.155 1.155 25 C -0.080 4.080 26 C -0.006 4.006 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.128 0.872 37 H 0.058 0.942 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.141 0.859 41 H 0.224 0.776 42 H 0.087 0.913 43 H 0.060 0.940 44 H 0.127 0.873 45 H 0.114 0.886 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.688 6.832 -8.095 25.039 hybrid contribution 0.916 0.331 -0.986 1.386 sum -21.772 7.163 -9.081 24.653 Atomic orbital electron populations 1.22943 0.79250 1.04051 1.00789 1.87792 1.21537 1.27505 1.95593 1.22136 0.91434 0.84534 1.01047 1.21223 0.95244 0.93557 1.03008 0.86942 1.21686 1.01556 1.01837 0.94017 1.20704 0.80808 0.91157 0.75823 1.90659 1.62432 1.42180 1.50492 1.48274 1.15799 1.08408 1.61581 1.22017 0.89548 0.88032 1.00831 1.22606 0.95865 0.92842 0.97393 1.61452 1.00720 1.02901 1.60913 1.21818 0.88399 0.99616 0.97746 1.20810 0.82339 0.87123 0.85647 1.90511 1.72602 1.46872 1.38479 1.42057 1.07796 1.34430 1.39244 1.18984 0.90981 1.14154 1.21076 0.92384 1.26086 0.96077 0.99097 1.00253 1.69799 1.07521 1.36581 1.43690 0.85392 0.79130 0.78446 0.78721 1.18282 1.20300 1.15499 1.22538 0.93161 0.94958 0.97384 1.21763 0.93243 0.84145 1.01477 0.93406 0.93294 0.87965 0.92620 0.93230 0.92422 0.91711 0.89716 0.90723 0.87207 0.94225 0.90055 0.90677 0.85882 0.77630 0.91262 0.94046 0.87260 0.88568 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.54 10.33 -148.98 -1.54 -9.07 16 3 C 0.09 1.64 4.77 71.98 0.34 1.98 16 4 C -0.11 -2.07 2.10 -11.54 -0.02 -2.10 16 5 H 0.11 1.93 6.78 -2.38 -0.02 1.91 16 6 C -0.13 -2.26 8.73 71.98 0.63 -1.63 16 7 C 0.53 12.41 6.80 87.66 0.60 13.00 16 8 O -0.58 -16.90 15.66 -3.05 -0.05 -16.95 16 9 N -0.61 -13.77 3.00 -817.05 -2.45 -16.22 16 10 C 0.12 2.70 6.15 86.51 0.53 3.23 16 11 C 0.04 1.14 5.27 86.54 0.46 1.60 16 12 N -0.53 -14.78 4.37 -898.87 -3.93 -18.70 16 13 C 0.06 1.57 5.45 85.56 0.47 2.04 16 14 C 0.45 19.26 7.44 87.66 0.65 19.91 16 15 O -0.60 -31.03 13.91 -3.05 -0.04 -31.07 16 16 N -0.59 -26.83 5.09 -306.98 -1.56 -28.39 16 17 C -0.32 -18.34 10.16 84.04 0.85 -17.49 16 18 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 19 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 20 N -0.93 -55.60 13.96 21.66 0.30 -55.30 16 21 Si 0.96 38.02 27.74 68.60 1.90 39.93 16 22 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 23 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 25 C 0.05 0.98 5.62 86.38 0.49 1.46 16 26 C 0.12 2.48 6.61 86.35 0.57 3.05 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.06 1.11 8.03 -2.39 -0.02 1.09 16 31 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.06 7.20 -2.39 -0.02 1.05 16 34 H 0.08 1.32 7.96 -2.39 -0.02 1.30 16 35 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.11 2.02 4.94 -2.39 -0.01 2.01 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 2.87 5.76 -2.39 -0.01 2.86 16 39 H 0.08 1.82 8.12 -2.38 -0.02 1.80 16 40 H 0.12 2.81 7.97 -2.39 -0.02 2.79 16 41 H 0.39 14.54 5.76 -92.71 -0.53 14.01 16 42 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.11 1.79 7.99 -2.39 -0.02 1.77 16 45 H 0.10 2.05 7.04 -2.39 -0.02 2.04 16 46 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.10 366.92 0.30 -75.80 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.39 Total: 33.80 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 7.28 Total: 26.19 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -7.64 Total: -118.62 kcal Atomic # 8 Polarization: -55.47 SS G_CDS: -1.63 Total: -57.10 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 1.90 Total: 39.93 kcal Total: -76.10 0.30 -75.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112690669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.374 kcal (2) G-P(sol) polarization free energy of solvation -76.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds