Wall clock time and date at job start Tue Mar 31 2020 04:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47016 * 2 1 4 4 C 1.53007 * 109.47241 * 119.99517 * 2 1 3 5 5 H 1.09001 * 109.47187 * 298.60852 * 4 2 1 6 6 O 1.42895 * 109.46980 * 58.60957 * 4 2 1 7 7 C 1.50701 * 109.46946 * 178.60939 * 4 2 1 8 8 O 1.21288 * 119.99628 * 269.78359 * 7 4 2 9 9 N 1.34772 * 120.00225 * 89.78385 * 7 4 2 10 10 C 1.47081 * 120.88180 * 175.70676 * 9 7 4 11 11 C 1.53240 * 108.52246 * 231.16466 * 10 9 7 12 12 N 1.46900 * 109.33683 * 306.16858 * 11 10 9 13 13 C 1.46899 * 110.99988 * 187.25295 * 12 11 10 14 14 C 1.50695 * 109.47265 * 301.20253 * 13 12 11 15 15 O 1.21298 * 119.99795 * 354.63341 * 14 13 12 16 16 N 1.34771 * 120.00130 * 174.63671 * 14 13 12 17 17 C 1.37105 * 120.00096 * 180.02562 * 16 14 13 18 18 H 1.07993 * 119.99738 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99814 * 179.97438 * 17 16 14 20 20 N 1.31415 * 119.99713 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00257 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47206 * 89.99951 * 21 19 17 23 23 H 1.48500 * 109.46910 * 209.99738 * 21 19 17 24 24 H 1.48497 * 109.47009 * 329.99827 * 21 19 17 25 25 C 1.46907 * 111.27009 * 63.10472 * 12 11 10 26 26 C 1.47078 * 120.88062 * 355.68371 * 9 7 4 27 27 H 1.08995 * 109.46952 * 299.99925 * 1 2 3 28 28 H 1.08992 * 109.47074 * 60.00552 * 1 2 3 29 29 H 1.09000 * 109.46546 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47438 * 239.99903 * 2 1 3 31 31 H 1.08994 * 109.47293 * 177.98540 * 3 2 1 32 32 H 1.09005 * 109.46724 * 297.98119 * 3 2 1 33 33 H 1.09001 * 109.47172 * 57.97730 * 3 2 1 34 34 H 0.96705 * 114.00390 * 59.99548 * 6 4 2 35 35 H 1.09003 * 109.62693 * 350.86968 * 10 9 7 36 36 H 1.08998 * 109.62786 * 111.45263 * 10 9 7 37 37 H 1.08998 * 109.49420 * 66.12759 * 11 10 9 38 38 H 1.08999 * 109.49575 * 186.21058 * 11 10 9 39 39 H 1.08999 * 109.46797 * 61.20591 * 13 12 11 40 40 H 1.09004 * 109.47082 * 181.20221 * 13 12 11 41 41 H 0.97003 * 119.99987 * 359.97438 * 16 14 13 42 42 H 0.97003 * 119.99809 * 179.97438 * 20 19 17 43 43 H 1.08995 * 109.49162 * 176.93862 * 25 12 11 44 44 H 1.08997 * 109.48975 * 56.85656 * 25 12 11 45 45 H 1.09000 * 109.62404 * 248.54594 * 26 9 7 46 46 H 1.09002 * 109.62998 * 9.12697 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6972 -0.1931 2.1391 6 8 1.5372 -2.0586 1.2659 7 6 3.5466 -0.7511 1.2322 8 8 4.1288 -1.6788 0.7111 9 7 4.2471 0.2530 1.7958 10 6 5.7148 0.1988 1.8734 11 6 6.1365 0.4777 3.3200 12 7 5.5371 1.7425 3.7661 13 6 6.0528 2.1330 5.0850 14 6 5.7490 1.0473 6.0849 15 8 5.0769 0.0921 5.7574 16 7 6.2239 1.1377 7.3429 17 6 5.9479 0.1496 8.2525 18 1 5.3495 -0.7008 7.9609 19 6 6.4380 0.2425 9.5493 20 7 6.1730 -0.7043 10.4213 21 14 7.4735 1.7132 10.0534 22 1 6.5892 2.7856 10.5760 23 1 8.4330 1.3040 11.1103 24 1 8.2216 2.2191 8.8746 25 6 4.0703 1.6625 3.7770 26 6 3.5640 1.4321 2.3491 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1293 1.4429 0.0361 32 1 1.7064 1.9458 -0.9076 33 1 1.6473 1.9668 0.8713 34 1 1.8033 -2.5884 0.5019 35 1 6.0610 -0.7909 1.5755 36 1 6.1444 0.9537 1.2148 37 1 5.7933 -0.3338 3.9617 38 1 7.2227 0.5507 3.3747 39 1 7.1312 2.2799 5.0245 40 1 5.5769 3.0614 5.4008 41 1 6.7616 1.9014 7.6047 42 1 6.5154 -0.6396 11.3265 43 1 3.6581 2.5947 4.1631 44 1 3.7559 0.8346 4.4124 45 1 3.7869 2.3055 1.7362 46 1 2.4882 1.2579 2.3658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112817395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:02 Heat of formation + Delta-G solvation = -101.488485 kcal Electronic energy + Delta-G solvation = -27709.192417 eV Core-core repulsion = 23827.478615 eV Total energy + Delta-G solvation = -3881.713803 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76450 -39.27949 -37.56346 -36.83762 -35.00529 -34.19824 -33.64563 -31.80271 -31.20415 -29.21710 -27.55201 -27.17165 -25.52109 -23.71536 -23.60538 -21.58923 -20.78522 -19.58099 -19.27455 -18.39717 -17.63365 -17.02899 -16.16779 -15.88531 -15.76095 -15.14082 -15.05268 -14.86522 -14.50379 -14.34651 -14.13586 -13.86662 -13.65817 -13.30161 -13.11728 -12.97648 -12.80726 -12.49832 -12.40158 -12.15135 -11.97686 -11.75037 -11.66275 -11.39100 -11.29679 -11.26684 -11.14055 -10.93241 -10.78361 -10.66022 -10.47280 -10.08691 -9.59990 -9.47669 -9.43010 -8.71214 -8.26917 -7.62033 -6.40476 -3.92189 2.49640 2.89208 2.95921 3.00278 3.09395 3.57621 4.01978 4.03823 4.16866 4.26442 4.46972 4.51893 4.57509 4.88500 4.95919 5.05023 5.08363 5.16515 5.24504 5.28204 5.34268 5.37372 5.48997 5.53119 5.56737 5.60356 5.70930 5.75344 5.77574 5.80581 5.81847 5.92832 5.96483 5.99637 6.35777 6.44749 6.54810 7.03450 7.19225 7.31037 7.42615 7.46693 8.05276 8.06912 8.47532 8.84792 9.32125 9.69702 10.72222 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.023044 B = 0.003141 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.798734 B = 8912.801312 C = 9204.819422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 C -0.161 4.161 4 C 0.094 3.906 5 H 0.121 0.879 6 O -0.537 6.537 7 C 0.493 3.507 8 O -0.545 6.545 9 N -0.601 5.601 10 C 0.120 3.880 11 C 0.021 3.979 12 N -0.511 5.511 13 C 0.039 3.961 14 C 0.412 3.588 15 O -0.576 6.576 16 N -0.581 5.581 17 C -0.309 4.309 18 H 0.119 0.881 19 C 0.043 3.957 20 N -0.877 5.877 21 Si 0.881 3.119 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.268 1.268 25 C 0.019 3.981 26 C 0.109 3.891 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.382 0.618 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.371 0.629 42 H 0.275 0.725 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 9.235 -19.161 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C -0.219 4.219 4 C 0.031 3.969 5 H 0.138 0.862 6 O -0.342 6.342 7 C 0.281 3.719 8 O -0.423 6.423 9 N -0.335 5.335 10 C -0.003 4.003 11 C -0.107 4.107 12 N -0.234 5.234 13 C -0.093 4.093 14 C 0.198 3.802 15 O -0.461 6.461 16 N -0.219 5.219 17 C -0.438 4.438 18 H 0.136 0.864 19 C -0.161 4.161 20 N -0.516 5.516 21 Si 0.707 3.293 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.110 4.110 26 C -0.014 4.014 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.204 0.796 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.097 8.560 -19.212 21.899 hybrid contribution 1.047 0.443 0.903 1.452 sum -5.050 9.003 -18.310 21.019 Atomic orbital electron populations 1.21755 0.93493 1.02700 1.01939 1.21735 0.97531 0.97128 0.97516 1.22224 1.01873 0.95076 1.02691 1.22048 0.89147 0.85299 1.00361 0.86155 1.86621 1.74687 1.22502 1.50378 1.21477 0.90927 0.81688 0.77785 1.90674 1.71562 1.34649 1.45447 1.48167 1.07568 1.19700 1.58052 1.21713 0.78998 1.02708 0.96839 1.22737 0.99309 0.93276 0.95415 1.62463 1.06220 1.31126 1.23633 1.22106 1.01639 0.97661 0.87888 1.21021 0.85634 0.89843 0.83722 1.90476 1.42678 1.34973 1.77964 1.42398 1.47092 1.21882 1.10554 1.19453 1.31971 1.02280 0.90097 0.86357 1.25090 0.97757 0.97545 0.95694 1.69630 1.44493 1.32525 1.04937 0.86653 0.80728 0.82683 0.79234 1.19527 1.20087 1.19393 1.22737 0.88752 1.03358 0.96151 1.22224 0.96696 0.87719 0.94726 0.92291 0.92400 0.91746 0.90348 0.91647 0.91961 0.91591 0.76889 0.89105 0.91318 0.89852 0.90404 0.89113 0.88983 0.79578 0.91474 0.90285 0.90073 0.90447 0.89473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.03 37.16 0.34 -0.72 16 2 C -0.12 -1.03 2.67 -90.61 -0.24 -1.27 16 3 C -0.16 -1.20 7.40 37.16 0.28 -0.92 16 4 C 0.09 1.08 2.58 -27.88 -0.07 1.01 16 5 H 0.12 1.34 6.14 -51.93 -0.32 1.02 16 6 O -0.54 -6.81 12.47 -53.11 -0.66 -7.47 16 7 C 0.49 7.08 6.19 -10.99 -0.07 7.01 16 8 O -0.55 -9.54 15.90 -12.32 -0.20 -9.73 16 9 N -0.60 -8.02 2.56 -172.46 -0.44 -8.46 16 10 C 0.12 1.65 6.58 -3.60 -0.02 1.63 16 11 C 0.02 0.33 5.11 -3.70 -0.02 0.31 16 12 N -0.51 -7.42 4.83 -235.77 -1.14 -8.56 16 13 C 0.04 0.60 5.84 -4.98 -0.03 0.57 16 14 C 0.41 8.70 7.18 -10.99 -0.08 8.62 16 15 O -0.58 -14.26 11.24 5.54 0.06 -14.19 16 16 N -0.58 -13.26 5.09 -10.97 -0.06 -13.31 16 17 C -0.31 -8.53 10.16 -14.93 -0.15 -8.69 16 18 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 20 N -0.88 -25.29 13.96 55.50 0.77 -24.51 16 21 Si 0.88 18.89 27.74 -169.99 -4.71 14.18 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 24 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 25 C 0.02 0.26 5.22 -3.70 -0.02 0.24 16 26 C 0.11 1.20 4.22 -3.60 -0.02 1.18 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.51 7.64 -51.93 -0.40 0.12 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.57 5.40 -51.93 -0.28 0.29 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.42 6.57 -51.93 -0.34 0.08 16 34 H 0.38 3.96 8.63 45.56 0.39 4.36 16 35 H 0.09 1.36 7.09 -51.93 -0.37 0.99 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.68 5.66 -51.93 -0.29 1.39 16 38 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 41 H 0.37 7.42 5.76 -40.82 -0.24 7.18 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.08 0.95 8.05 -51.93 -0.42 0.54 16 44 H 0.08 1.48 5.81 -51.93 -0.30 1.18 16 45 H 0.08 0.72 7.33 -51.93 -0.38 0.34 16 46 H 0.09 0.80 3.93 -51.93 -0.20 0.60 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -33.74 350.97 -7.37 -41.11 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -6.08 Total: 15.63 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.20 Total: 10.04 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.86 Total: -54.84 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.80 Total: -31.40 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.18 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.74 -7.37 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112817395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.383 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds