Wall clock time and date at job start Tue Mar 31 2020 04:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47425 * 2 1 4 4 H 1.09010 * 110.41478 * 304.14955 * 3 2 1 5 5 C 1.54474 * 110.37429 * 181.83766 * 3 2 1 6 6 C 1.54505 * 104.06096 * 217.18882 * 5 3 2 7 7 C 1.54477 * 104.06720 * 0.02562 * 6 5 3 8 8 H 1.08998 * 110.46773 * 265.10189 * 7 6 5 9 9 C 1.50694 * 110.37601 * 142.80878 * 7 6 5 10 10 O 1.21290 * 119.99961 * 248.16697 * 9 7 6 11 11 N 1.34773 * 120.00038 * 68.16585 * 9 7 6 12 12 C 1.46503 * 120.00135 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.47195 * 180.02562 * 12 11 9 14 14 N 1.46901 * 109.46977 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99844 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47027 * 179.97438 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72353 * 16 15 14 19 19 C 1.37101 * 120.00327 * 180.27606 * 18 16 15 20 20 H 1.08001 * 119.99426 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00057 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47191 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46534 * 120.00189 * 23 21 19 26 26 H 1.48498 * 109.47283 * 240.00132 * 23 21 19 27 27 O 1.44424 * 104.79995 * 23.97622 * 7 6 5 28 28 H 1.09002 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46829 * 299.99645 * 1 2 3 30 30 H 1.08997 * 109.47556 * 59.99556 * 1 2 3 31 31 H 1.09000 * 109.47157 * 240.00456 * 2 1 3 32 32 H 1.08997 * 109.47556 * 120.00444 * 2 1 3 33 33 H 1.09002 * 110.51089 * 335.83624 * 5 3 2 34 34 H 1.09008 * 110.50819 * 98.40968 * 5 3 2 35 35 H 1.09003 * 110.51166 * 241.35298 * 6 5 3 36 36 H 1.09005 * 110.51336 * 118.64693 * 6 5 3 37 37 H 0.97000 * 120.00161 * 359.97438 * 11 9 7 38 38 H 1.08998 * 109.47382 * 59.99704 * 12 11 9 39 39 H 1.09005 * 109.46798 * 300.00154 * 12 11 9 40 40 H 1.08997 * 109.47854 * 59.99777 * 13 12 11 41 41 H 1.09005 * 109.47140 * 299.99658 * 13 12 11 42 42 H 1.00895 * 111.00207 * 303.94924 * 14 13 12 43 43 H 1.09004 * 109.47131 * 60.00016 * 15 14 13 44 44 H 1.09000 * 109.47732 * 300.00127 * 15 14 13 45 45 H 0.97000 * 120.00317 * 0.28382 * 18 16 15 46 46 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6261 1.9922 -0.8455 5 6 3.5839 1.4670 -0.0464 6 6 3.9679 2.6571 0.8611 7 6 2.6106 3.2104 1.3490 8 1 2.2828 4.0320 0.7121 9 6 2.7147 3.6675 2.7812 10 8 2.1260 3.0655 3.6542 11 7 3.4619 4.7452 3.0919 12 6 3.5635 5.1893 4.4843 13 6 4.4641 6.4237 4.5615 14 7 4.5655 6.8693 5.9576 15 6 5.4251 8.0552 6.0706 16 6 5.5044 8.4825 7.5136 17 8 4.9043 7.8601 8.3643 18 7 6.2470 9.5527 7.8597 19 6 6.3238 9.9381 9.1732 20 1 5.7894 9.3838 9.9306 21 6 7.0890 11.0416 9.5299 22 7 7.7387 11.7163 8.6082 23 14 7.1929 11.5671 11.3194 24 1 6.3757 10.6493 12.1531 25 1 8.6074 11.5160 11.7688 26 1 6.6789 12.9532 11.4590 27 8 1.6980 2.0962 1.2419 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9927 0.5373 0.3494 34 1 3.9327 1.6332 -1.0657 35 1 4.5066 3.4139 0.2909 36 1 4.5666 2.3158 1.7056 37 1 3.9331 5.2264 2.3938 38 1 3.9895 4.3899 5.0906 39 1 2.5711 5.4400 4.8591 40 1 4.0378 7.2231 3.9555 41 1 5.4566 6.1734 4.1867 42 1 3.6520 7.0460 6.3481 43 1 5.0059 8.8659 5.4745 44 1 6.4242 7.8159 5.7067 45 1 6.7272 10.0503 7.1794 46 1 8.2726 12.4869 8.8571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128543065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:25 Heat of formation + Delta-G solvation = -127.802145 kcal Electronic energy + Delta-G solvation = -24967.318307 eV Core-core repulsion = 21084.463459 eV Total energy + Delta-G solvation = -3882.854849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.67380 -38.98914 -38.31181 -36.29330 -34.42900 -34.03110 -33.76640 -32.55580 -31.25311 -30.05983 -28.53149 -26.10676 -24.74736 -23.73324 -22.35548 -22.10901 -21.44299 -20.62335 -19.30110 -17.94821 -17.64191 -17.07294 -16.71276 -16.26353 -15.84345 -15.74029 -15.09768 -14.93328 -14.54170 -14.29866 -14.11368 -13.96702 -13.83404 -13.67871 -13.50363 -13.39408 -13.14102 -12.51742 -12.26060 -12.22176 -11.95572 -11.86493 -11.53700 -11.48505 -11.45276 -11.38323 -11.21999 -11.08172 -11.05899 -10.35911 -10.34693 -10.23712 -9.86773 -9.53502 -9.29705 -8.52139 -8.14871 -7.97910 -6.43312 -3.84106 2.34949 2.55501 3.15867 3.26701 3.34291 3.55636 3.88308 3.98708 4.08102 4.16958 4.34552 4.39540 4.45214 4.62247 4.68656 4.78247 4.85164 4.89460 4.96784 5.05607 5.15981 5.17846 5.24582 5.26750 5.35949 5.38306 5.46106 5.55497 5.58195 5.70198 5.74427 5.80482 5.88083 5.92473 5.95895 6.13365 6.23560 6.36615 7.07035 7.22302 7.54358 7.54913 7.97861 8.04920 8.59360 9.16572 9.52265 10.03565 10.74473 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.051677 B = 0.001613 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.696058 B =17359.819562 C =17701.417827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.072 0.928 5 C -0.150 4.150 6 C -0.145 4.145 7 C 0.059 3.941 8 H 0.094 0.906 9 C 0.517 3.483 10 O -0.515 6.515 11 N -0.726 5.726 12 C 0.121 3.879 13 C 0.050 3.950 14 N -0.666 5.666 15 C 0.053 3.947 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 O -0.338 6.338 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.400 0.600 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.353 0.647 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 -16.275 -24.673 30.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.090 0.910 5 C -0.188 4.188 6 C -0.183 4.183 7 C -0.003 4.003 8 H 0.111 0.889 9 C 0.301 3.699 10 O -0.389 6.389 11 N -0.380 5.380 12 C -0.003 4.003 13 C -0.080 4.080 14 N -0.299 5.299 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 O -0.256 6.256 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.233 0.767 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.173 0.827 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.401 -17.482 -23.092 29.894 hybrid contribution 0.344 1.782 -0.488 1.879 sum -7.057 -15.700 -23.580 29.194 Atomic orbital electron populations 1.21734 0.95079 1.01715 1.02428 1.21584 0.97011 0.94017 1.02828 1.23160 0.93678 0.94575 0.87366 0.91024 1.23004 0.95992 0.99247 1.00523 1.22911 0.96321 0.98553 1.00507 1.22814 0.91088 0.92113 0.94292 0.88859 1.20162 0.79194 0.80346 0.90185 1.90765 1.44189 1.54498 1.49447 1.45796 1.51228 1.30702 1.10309 1.21302 1.00391 0.97185 0.81389 1.22072 0.99787 0.95363 0.90788 1.59923 1.19049 1.35711 1.15229 1.21670 0.98489 0.91119 0.96721 1.19779 0.84720 0.83544 0.89463 1.90538 1.48888 1.55820 1.51308 1.41861 1.42909 1.25745 1.09490 1.19772 1.27806 1.10877 0.84429 0.87813 1.25262 0.96369 0.96324 0.99970 1.69618 1.31415 1.19915 1.33395 0.85793 0.78052 0.78420 0.82047 1.19181 1.20733 1.20768 1.89306 1.54745 1.41591 1.39981 0.92662 0.91745 0.92897 0.90606 0.90874 0.90129 0.90066 0.89462 0.89930 0.76652 0.90070 0.91217 0.94884 0.90434 0.82744 0.93712 0.89450 0.77465 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.83 37.15 0.37 -0.66 16 2 C -0.12 -0.75 5.57 -26.73 -0.15 -0.89 16 3 C 0.07 0.48 3.28 -25.95 -0.09 0.40 16 4 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 5 C -0.15 -0.79 6.63 -25.17 -0.17 -0.96 16 6 C -0.14 -0.84 6.62 -25.17 -0.17 -1.01 16 7 C 0.06 0.49 3.71 -27.11 -0.10 0.39 16 8 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 9 C 0.52 5.94 7.07 -10.99 -0.08 5.87 16 10 O -0.52 -8.59 16.56 -13.64 -0.23 -8.82 16 11 N -0.73 -6.52 5.56 -60.30 -0.33 -6.85 16 12 C 0.12 1.36 5.93 -4.04 -0.02 1.34 16 13 C 0.05 0.55 5.80 -3.83 -0.02 0.53 16 14 N -0.67 -10.40 6.13 -115.06 -0.70 -11.11 16 15 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 16 C 0.44 10.30 7.82 -10.98 -0.09 10.22 16 17 O -0.58 -15.85 15.78 5.55 0.09 -15.77 16 18 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 19 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 23 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 27 O -0.34 -3.64 10.26 -54.42 -0.56 -4.19 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.56 7.91 -51.92 -0.41 0.15 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 34 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 37 H 0.40 2.22 8.47 -40.82 -0.35 1.87 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.35 5.75 8.43 -39.29 -0.33 5.42 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 46 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 385.00 15.07 5.80 5.80 Total: -1.00 -35.33 385.00 -8.73 -44.06 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.66 Total: 10.68 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.78 Total: 8.08 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.37 Total: -55.85 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.70 Total: -28.78 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.33 -8.73 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128543065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.737 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds