Wall clock time and date at job start Tue Mar 31 2020 04:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47425 * 2 1 4 4 H 1.09010 * 110.41478 * 304.14955 * 3 2 1 5 5 C 1.54474 * 110.37429 * 181.83766 * 3 2 1 6 6 C 1.54505 * 104.06096 * 217.18882 * 5 3 2 7 7 C 1.54477 * 104.06720 * 0.02562 * 6 5 3 8 8 H 1.08998 * 110.46773 * 265.10189 * 7 6 5 9 9 C 1.50694 * 110.37601 * 142.80878 * 7 6 5 10 10 O 1.21290 * 119.99961 * 248.16697 * 9 7 6 11 11 N 1.34773 * 120.00038 * 68.16585 * 9 7 6 12 12 C 1.46503 * 120.00135 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.47195 * 180.02562 * 12 11 9 14 14 N 1.46901 * 109.46977 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99844 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47027 * 179.97438 * 15 14 13 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99928 * 179.72353 * 16 15 14 19 19 C 1.37101 * 120.00327 * 180.27606 * 18 16 15 20 20 H 1.08001 * 119.99426 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00412 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00005 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00057 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47191 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46534 * 120.00189 * 23 21 19 26 26 H 1.48498 * 109.47283 * 240.00132 * 23 21 19 27 27 O 1.44424 * 104.79995 * 23.97622 * 7 6 5 28 28 H 1.09002 * 109.47321 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46829 * 299.99645 * 1 2 3 30 30 H 1.08997 * 109.47556 * 59.99556 * 1 2 3 31 31 H 1.09000 * 109.47157 * 240.00456 * 2 1 3 32 32 H 1.08997 * 109.47556 * 120.00444 * 2 1 3 33 33 H 1.09002 * 110.51089 * 335.83624 * 5 3 2 34 34 H 1.09008 * 110.50819 * 98.40968 * 5 3 2 35 35 H 1.09003 * 110.51166 * 241.35298 * 6 5 3 36 36 H 1.09005 * 110.51336 * 118.64693 * 6 5 3 37 37 H 0.97000 * 120.00161 * 359.97438 * 11 9 7 38 38 H 1.08998 * 109.47382 * 59.99704 * 12 11 9 39 39 H 1.09005 * 109.46798 * 300.00154 * 12 11 9 40 40 H 1.08997 * 109.47854 * 59.99777 * 13 12 11 41 41 H 1.09005 * 109.47140 * 299.99658 * 13 12 11 42 42 H 1.00895 * 111.00207 * 303.94924 * 14 13 12 43 43 H 1.09004 * 109.47131 * 60.00016 * 15 14 13 44 44 H 1.09000 * 109.47732 * 300.00127 * 15 14 13 45 45 H 0.97000 * 120.00317 * 0.28382 * 18 16 15 46 46 H 0.96996 * 120.00330 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6261 1.9922 -0.8455 5 6 3.5839 1.4670 -0.0464 6 6 3.9679 2.6571 0.8611 7 6 2.6106 3.2104 1.3490 8 1 2.2828 4.0320 0.7121 9 6 2.7147 3.6675 2.7812 10 8 2.1260 3.0655 3.6542 11 7 3.4619 4.7452 3.0919 12 6 3.5635 5.1893 4.4843 13 6 4.4641 6.4237 4.5615 14 7 4.5655 6.8693 5.9576 15 6 5.4251 8.0552 6.0706 16 6 5.5044 8.4825 7.5136 17 8 4.9043 7.8601 8.3643 18 7 6.2470 9.5527 7.8597 19 6 6.3238 9.9381 9.1732 20 1 5.7894 9.3838 9.9306 21 6 7.0890 11.0416 9.5299 22 7 7.7387 11.7163 8.6082 23 14 7.1929 11.5671 11.3194 24 1 6.3757 10.6493 12.1531 25 1 8.6074 11.5160 11.7688 26 1 6.6789 12.9532 11.4590 27 8 1.6980 2.0962 1.2419 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.9927 0.5373 0.3494 34 1 3.9327 1.6332 -1.0657 35 1 4.5066 3.4139 0.2909 36 1 4.5666 2.3158 1.7056 37 1 3.9331 5.2264 2.3938 38 1 3.9895 4.3899 5.0906 39 1 2.5711 5.4400 4.8591 40 1 4.0378 7.2231 3.9555 41 1 5.4566 6.1734 4.1867 42 1 3.6520 7.0460 6.3481 43 1 5.0059 8.8659 5.4745 44 1 6.4242 7.8159 5.7067 45 1 6.7272 10.0503 7.1794 46 1 8.2726 12.4869 8.8571 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128543065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:25 Heat of formation + Delta-G solvation = -156.152123 kcal Electronic energy + Delta-G solvation = -24968.547654 eV Core-core repulsion = 21084.463459 eV Total energy + Delta-G solvation = -3884.084196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40291 -40.18024 -39.70977 -37.46719 -36.00925 -35.28860 -34.56477 -33.28377 -33.10311 -31.01020 -29.38141 -27.59135 -25.86915 -24.94050 -23.12250 -22.80989 -21.95798 -21.44592 -21.10059 -19.92367 -18.50550 -17.77603 -17.62141 -17.42557 -17.17936 -16.67568 -16.46263 -16.02113 -15.94525 -15.61829 -15.25924 -14.88079 -14.71740 -14.61220 -14.46145 -14.21134 -14.04915 -13.96531 -13.53291 -13.33117 -12.97047 -12.88771 -12.68951 -12.60317 -12.43500 -12.39896 -12.37252 -12.11848 -11.89515 -11.71601 -11.52717 -11.51805 -11.03867 -10.66833 -10.36782 -10.21168 -10.01497 -9.38199 -8.47262 -5.95780 1.36581 1.42292 1.48637 1.56184 1.76704 2.05115 2.29859 2.88529 3.10110 3.20333 3.44823 3.55365 3.65787 3.86343 3.91603 3.94662 4.10314 4.14963 4.19034 4.32011 4.34746 4.38322 4.46035 4.51029 4.58656 4.61789 4.75232 4.88393 4.89453 4.92837 4.93787 5.02766 5.07462 5.15512 5.22274 5.29296 5.41298 5.41389 5.84318 5.84729 6.07307 6.31421 6.48625 6.60144 7.12823 7.17278 7.56154 8.12033 8.70228 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.051677 B = 0.001613 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.696058 B =17359.819562 C =17701.417827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.062 3.938 4 H 0.089 0.911 5 C -0.146 4.146 6 C -0.140 4.140 7 C 0.059 3.941 8 H 0.125 0.875 9 C 0.511 3.489 10 O -0.579 6.579 11 N -0.705 5.705 12 C 0.128 3.872 13 C 0.060 3.940 14 N -0.688 5.688 15 C 0.069 3.931 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.270 1.270 27 O -0.380 6.380 28 H 0.061 0.939 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.421 0.579 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.097 0.903 42 H 0.345 0.655 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.398 0.602 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -15.442 -27.550 32.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.006 3.994 4 H 0.107 0.893 5 C -0.183 4.183 6 C -0.178 4.178 7 C -0.002 4.002 8 H 0.143 0.857 9 C 0.298 3.702 10 O -0.458 6.458 11 N -0.360 5.360 12 C 0.003 3.997 13 C -0.069 4.069 14 N -0.321 5.321 15 C -0.063 4.063 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.200 1.200 25 H -0.196 1.196 26 H -0.195 1.195 27 O -0.299 6.299 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.259 0.741 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.164 0.836 43 H 0.092 0.908 44 H 0.129 0.871 45 H 0.232 0.768 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.137 -16.615 -26.046 31.498 hybrid contribution -0.070 1.475 0.370 1.522 sum -6.207 -15.140 -25.676 30.447 Atomic orbital electron populations 1.21720 0.95649 1.01913 1.01581 1.21634 0.96546 0.94253 1.03119 1.23406 0.95039 0.94496 0.86501 0.89281 1.23024 0.94605 0.98756 1.01949 1.22957 0.94790 0.99637 1.00384 1.23012 0.92465 0.92692 0.92067 0.85734 1.20935 0.78105 0.79916 0.91290 1.90736 1.46925 1.56586 1.51511 1.45569 1.50466 1.30040 1.09925 1.21060 0.99527 0.96753 0.82365 1.22063 1.00862 0.95403 0.88550 1.59889 1.18602 1.35243 1.18382 1.21526 1.00338 0.92527 0.91933 1.20970 0.82706 0.82095 0.92040 1.90508 1.50257 1.56915 1.53612 1.41915 1.43659 1.26565 1.08777 1.19700 1.29313 1.12048 0.85457 0.90514 1.25999 0.95437 0.95712 1.03904 1.69665 1.31301 1.20076 1.34899 0.84889 0.78290 0.78100 0.77162 1.20018 1.19569 1.19512 1.89286 1.55893 1.42727 1.41985 0.91991 0.94546 0.91684 0.88069 0.92721 0.90794 0.87188 0.85895 0.91602 0.74118 0.92550 0.92793 0.92202 0.88497 0.83614 0.90810 0.87147 0.76808 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.83 71.98 0.71 -1.31 16 2 C -0.12 -1.42 5.57 30.59 0.17 -1.25 16 3 C 0.06 0.76 3.28 31.10 0.10 0.87 16 4 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 5 C -0.15 -1.16 6.63 31.61 0.21 -0.95 16 6 C -0.14 -1.26 6.62 31.61 0.21 -1.05 16 7 C 0.06 0.88 3.71 30.35 0.11 1.00 16 8 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 9 C 0.51 11.67 7.07 87.66 0.62 12.29 16 10 O -0.58 -20.40 16.56 15.29 0.25 -20.14 16 11 N -0.71 -11.63 5.56 -463.06 -2.57 -14.20 16 12 C 0.13 2.82 5.93 86.38 0.51 3.34 16 13 C 0.06 1.17 5.80 86.30 0.50 1.67 16 14 N -0.69 -20.67 6.13 -517.93 -3.17 -23.85 16 15 C 0.07 2.20 6.17 85.56 0.53 2.73 16 16 C 0.43 20.43 7.82 87.66 0.69 21.11 16 17 O -0.63 -35.09 15.78 -3.07 -0.05 -35.14 16 18 N -0.57 -28.98 5.29 -306.98 -1.62 -30.61 16 19 C -0.34 -19.09 9.68 84.04 0.81 -18.27 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.56 5.50 84.92 0.47 -0.10 16 22 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 23 Si 0.99 42.91 29.55 68.60 2.03 44.94 16 24 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 O -0.38 -8.13 10.26 -130.63 -1.34 -9.47 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.04 0.68 7.91 -2.38 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.69 7.87 -2.39 -0.02 0.67 16 34 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.07 0.83 7.86 -2.38 -0.02 0.81 16 37 H 0.42 3.29 8.47 -92.71 -0.79 2.50 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.35 11.23 8.43 -89.70 -0.76 10.48 16 43 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.40 18.86 7.90 -92.71 -0.73 18.13 16 46 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -81.22 385.00 -1.83 -83.04 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -1.27 Total: 34.00 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 5.64 Total: 20.07 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -7.09 Total: -117.30 kcal Atomic # 8 Polarization: -63.61 SS G_CDS: -1.14 Total: -64.75 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -81.22 -1.83 -83.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128543065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.108 kcal (2) G-P(sol) polarization free energy of solvation -81.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds