Wall clock time and date at job start Tue Mar 31 2020 04:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.86926 * 2 1 4 4 O 1.43744 * 109.88072 * 121.16417 * 2 1 3 5 5 C 1.44379 * 106.97402 * 145.93275 * 4 2 1 6 6 C 1.54988 * 103.49468 * 319.94184 * 5 4 2 7 7 C 1.54103 * 109.87476 * 238.99604 * 2 1 3 8 8 C 1.52995 * 110.49108 * 357.35191 * 7 2 1 9 9 C 1.50703 * 110.48769 * 119.87040 * 7 2 1 10 10 O 1.21273 * 119.99963 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99944 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99872 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46840 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.46769 * 180.02562 * 13 12 11 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47183 * 180.02562 * 15 14 13 17 17 O 1.21298 * 119.99556 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00297 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00513 * 179.97438 * 18 16 15 20 20 H 1.08009 * 119.99415 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00435 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00284 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99860 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47524 * 89.99390 * 23 21 19 25 25 H 1.48505 * 109.46910 * 209.99491 * 23 21 19 26 26 H 1.48502 * 109.46948 * 329.99132 * 23 21 19 27 27 H 1.09007 * 109.47355 * 181.00853 * 1 2 3 28 28 H 1.08999 * 109.46920 * 301.00663 * 1 2 3 29 29 H 1.08998 * 109.47400 * 61.00723 * 1 2 3 30 30 H 1.09005 * 110.61293 * 78.44542 * 5 4 2 31 31 H 1.09001 * 110.61725 * 201.27963 * 5 4 2 32 32 H 1.09002 * 110.90565 * 278.82752 * 6 5 4 33 33 H 1.09000 * 110.90823 * 155.22017 * 6 5 4 34 34 H 1.09001 * 109.47570 * 181.84262 * 8 7 2 35 35 H 1.09002 * 109.47100 * 301.84786 * 8 7 2 36 36 H 1.08998 * 109.47046 * 61.84404 * 8 7 2 37 37 H 0.97005 * 119.99680 * 359.97438 * 11 9 7 38 38 H 1.09001 * 109.46813 * 60.00258 * 12 11 9 39 39 H 1.08992 * 109.47397 * 300.00319 * 12 11 9 40 40 H 1.09002 * 109.47398 * 300.00326 * 13 12 11 41 41 H 1.09001 * 109.47194 * 60.00507 * 13 12 11 42 42 H 1.00898 * 110.99877 * 56.04956 * 14 13 12 43 43 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 44 44 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 45 45 H 0.97000 * 119.99683 * 0.02562 * 18 16 15 46 46 H 0.96999 * 120.00403 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2379 -1.3652 0.7627 6 6 2.9195 -1.8905 -0.6602 7 6 2.0539 -0.7465 -1.2422 8 6 0.8896 -1.3134 -2.0570 9 6 2.8944 0.1704 -2.0931 10 8 3.0699 1.3213 -1.7535 11 7 3.4510 -0.2887 -3.2315 12 6 4.2677 0.6027 -4.0589 13 6 4.7761 -0.1613 -5.2831 14 7 5.5955 0.7325 -6.1124 15 6 6.1017 0.0316 -7.3001 16 6 6.9362 0.9778 -8.1242 17 8 7.0934 2.1236 -7.7584 18 7 7.5070 0.5514 -9.2682 19 6 8.2658 1.4123 -10.0182 20 1 8.4064 2.4323 -9.6920 21 6 8.8546 0.9725 -11.1974 22 7 9.5816 1.7979 -11.9165 23 14 8.6119 -0.7918 -11.7611 24 1 7.4061 -0.8743 -12.6240 25 1 9.8026 -1.2338 -12.5307 26 1 8.4341 -1.6698 -10.5767 27 1 -0.3634 -1.0276 0.0181 28 1 -0.3633 0.5294 0.8808 29 1 -0.3634 0.4981 -0.8988 30 1 4.0685 -0.6599 0.7346 31 1 3.4599 -2.1911 1.4386 32 1 2.3538 -2.8212 -0.6138 33 1 3.8331 -2.0207 -1.2403 34 1 1.2793 -1.8650 -2.9125 35 1 0.3000 -1.9831 -1.4308 36 1 0.2599 -0.4960 -2.4081 37 1 3.3109 -1.2094 -3.5029 38 1 5.1164 0.9623 -3.4771 39 1 3.6647 1.4506 -4.3838 40 1 5.3793 -1.0089 -4.9577 41 1 3.9276 -0.5211 -5.8650 42 1 6.3525 1.1299 -5.5767 43 1 6.7135 -0.8151 -6.9891 44 1 5.2621 -0.3263 -7.8961 45 1 7.3803 -0.3645 -9.5613 46 1 9.9924 1.4910 -12.7399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131681068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:50 Heat of formation + Delta-G solvation = -113.291030 kcal Electronic energy + Delta-G solvation = -25724.654844 eV Core-core repulsion = 21842.429245 eV Total energy + Delta-G solvation = -3882.225599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29026 -38.92371 -38.50947 -36.44807 -34.77161 -34.26522 -33.80988 -32.00710 -31.69996 -29.59889 -28.07194 -26.48355 -25.74294 -23.86763 -23.01074 -22.37476 -21.72203 -19.61523 -19.42876 -18.44861 -17.91839 -16.59525 -16.48668 -16.15269 -15.95062 -15.73544 -15.47331 -15.14031 -14.89216 -14.54201 -14.34983 -14.06574 -13.83545 -13.54970 -13.37086 -13.13721 -13.03880 -12.68985 -12.53569 -12.33299 -12.12981 -11.96292 -11.88766 -11.68568 -11.64410 -11.58756 -11.37374 -11.18846 -11.18828 -10.63271 -10.20501 -10.00800 -9.87891 -9.61184 -9.39846 -8.67777 -8.29528 -8.21240 -6.34102 -3.85885 2.24746 2.67166 2.98584 3.03618 3.12014 3.40322 3.68718 3.86532 4.03496 4.07375 4.19372 4.23918 4.42018 4.63293 4.71996 4.73181 4.75049 4.93532 4.96109 5.02789 5.09231 5.15391 5.18152 5.23562 5.24756 5.29400 5.42003 5.44611 5.50865 5.52195 5.68704 5.71153 5.74106 5.78139 5.84726 5.87423 6.07467 6.49384 6.90937 7.10839 7.41701 7.54297 7.84424 8.10846 8.55862 8.91508 9.38559 9.78142 10.78920 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.035542 B = 0.001902 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.601362 B =14719.333007 C =14939.130292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.083 3.917 3 H 0.094 0.906 4 O -0.371 6.371 5 C 0.046 3.954 6 C -0.143 4.143 7 C -0.114 4.114 8 C -0.137 4.137 9 C 0.526 3.474 10 O -0.530 6.530 11 N -0.724 5.724 12 C 0.118 3.882 13 C 0.050 3.950 14 N -0.665 5.665 15 C 0.050 3.950 16 C 0.448 3.552 17 O -0.563 6.563 18 N -0.589 5.589 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.880 5.880 23 Si 0.881 3.119 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.270 1.270 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.354 0.646 43 H 0.046 0.954 44 H 0.089 0.911 45 H 0.370 0.630 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.295 -14.695 21.533 31.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.025 3.975 3 H 0.112 0.888 4 O -0.290 6.290 5 C -0.030 4.030 6 C -0.181 4.181 7 C -0.117 4.117 8 C -0.195 4.195 9 C 0.311 3.689 10 O -0.406 6.406 11 N -0.377 5.377 12 C -0.005 4.005 13 C -0.080 4.080 14 N -0.299 5.299 15 C -0.083 4.083 16 C 0.234 3.766 17 O -0.445 6.445 18 N -0.229 5.229 19 C -0.435 4.435 20 H 0.138 0.862 21 C -0.162 4.162 22 N -0.520 5.520 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.196 1.196 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.174 0.826 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.541 -12.738 21.686 30.662 hybrid contribution 0.773 -2.475 -0.740 2.696 sum -16.767 -15.212 20.946 30.843 Atomic orbital electron populations 1.22038 0.93366 1.02761 1.02675 1.22807 0.95255 0.96975 0.82431 0.88809 1.88885 1.39404 1.67732 1.32990 1.23526 0.88194 0.96602 0.94703 1.23274 1.00078 0.97721 0.97045 1.22159 0.96706 0.96015 0.96868 1.21952 0.96550 1.01528 0.99428 1.20191 0.79560 0.88106 0.81030 1.90721 1.60360 1.18534 1.70974 1.45871 1.52492 1.15422 1.23866 1.21320 0.95315 0.93227 0.90654 1.22077 0.98174 0.94170 0.93599 1.59911 1.27975 1.33564 1.08416 1.21702 0.98626 0.95168 0.92780 1.19663 0.84567 0.89086 0.83316 1.90582 1.63589 1.19213 1.71120 1.42192 1.46793 1.12431 1.21464 1.19438 1.25031 0.96504 1.02483 0.86239 1.25051 0.96743 0.98194 0.96217 1.69621 1.32275 1.35103 1.14987 0.86659 0.78952 0.84351 0.79316 1.19574 1.20166 1.19577 0.91613 0.91765 0.90921 0.91959 0.88536 0.89090 0.89758 0.91939 0.90558 0.91198 0.76609 0.91208 0.89976 0.94909 0.90413 0.82588 0.93604 0.89316 0.79692 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.40 37.16 0.31 -0.74 16 2 C 0.08 0.75 3.67 -26.16 -0.10 0.66 16 3 H 0.09 1.08 6.43 -51.93 -0.33 0.75 16 4 O -0.37 -3.64 11.19 -35.23 -0.39 -4.04 16 5 C 0.05 0.34 7.72 38.21 0.29 0.63 16 6 C -0.14 -0.81 6.25 -24.73 -0.15 -0.96 16 7 C -0.11 -0.83 0.82 -154.13 -0.13 -0.95 16 8 C -0.14 -0.69 7.17 37.15 0.27 -0.42 16 9 C 0.53 5.27 6.45 -10.98 -0.07 5.20 16 10 O -0.53 -7.61 15.25 5.56 0.08 -7.53 16 11 N -0.72 -5.85 5.30 -60.30 -0.32 -6.17 16 12 C 0.12 1.22 5.93 -4.04 -0.02 1.19 16 13 C 0.05 0.50 5.80 -3.82 -0.02 0.47 16 14 N -0.67 -9.65 6.13 -115.05 -0.70 -10.36 16 15 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 16 C 0.45 9.96 7.82 -10.99 -0.09 9.88 16 17 O -0.56 -15.02 15.78 5.54 0.09 -14.93 16 18 N -0.59 -13.79 5.09 -10.96 -0.06 -13.84 16 19 C -0.31 -8.59 10.16 -14.94 -0.15 -8.74 16 20 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.54 13.96 55.50 0.77 -24.77 16 23 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 27 H 0.06 0.38 6.67 -51.92 -0.35 0.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.45 6.87 -51.93 -0.36 0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.38 7.87 -51.93 -0.41 -0.03 16 33 H 0.08 0.41 7.74 -51.93 -0.40 0.01 16 34 H 0.06 0.23 7.49 -51.93 -0.39 -0.16 16 35 H 0.08 0.31 6.72 -51.93 -0.35 -0.04 16 36 H 0.07 0.38 6.84 -51.93 -0.36 0.02 16 37 H 0.40 2.07 7.80 -40.82 -0.32 1.75 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.35 5.40 8.43 -39.29 -0.33 5.06 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 46 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -35.27 370.62 -6.83 -42.10 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -7.19 Total: 11.65 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 0.01 Total: 7.98 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.31 Total: -55.14 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.22 Total: -26.50 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.27 -6.83 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131681068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.188 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds