Wall clock time and date at job start Tue Mar 31 2020 04:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.86926 * 2 1 4 4 O 1.43744 * 109.88072 * 121.16417 * 2 1 3 5 5 C 1.44379 * 106.97402 * 145.93275 * 4 2 1 6 6 C 1.54988 * 103.49468 * 319.94184 * 5 4 2 7 7 C 1.54103 * 109.87476 * 238.99604 * 2 1 3 8 8 C 1.52995 * 110.49108 * 357.35191 * 7 2 1 9 9 C 1.50703 * 110.48769 * 119.87040 * 7 2 1 10 10 O 1.21273 * 119.99963 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99944 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99872 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.46840 * 179.97438 * 12 11 9 14 14 N 1.46901 * 109.46769 * 180.02562 * 13 12 11 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 12 16 16 C 1.50700 * 109.47183 * 180.02562 * 15 14 13 17 17 O 1.21298 * 119.99556 * 359.97438 * 16 15 14 18 18 N 1.34769 * 120.00297 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00513 * 179.97438 * 18 16 15 20 20 H 1.08009 * 119.99415 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00435 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00284 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99860 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47524 * 89.99390 * 23 21 19 25 25 H 1.48505 * 109.46910 * 209.99491 * 23 21 19 26 26 H 1.48502 * 109.46948 * 329.99132 * 23 21 19 27 27 H 1.09007 * 109.47355 * 181.00853 * 1 2 3 28 28 H 1.08999 * 109.46920 * 301.00663 * 1 2 3 29 29 H 1.08998 * 109.47400 * 61.00723 * 1 2 3 30 30 H 1.09005 * 110.61293 * 78.44542 * 5 4 2 31 31 H 1.09001 * 110.61725 * 201.27963 * 5 4 2 32 32 H 1.09002 * 110.90565 * 278.82752 * 6 5 4 33 33 H 1.09000 * 110.90823 * 155.22017 * 6 5 4 34 34 H 1.09001 * 109.47570 * 181.84262 * 8 7 2 35 35 H 1.09002 * 109.47100 * 301.84786 * 8 7 2 36 36 H 1.08998 * 109.47046 * 61.84404 * 8 7 2 37 37 H 0.97005 * 119.99680 * 359.97438 * 11 9 7 38 38 H 1.09001 * 109.46813 * 60.00258 * 12 11 9 39 39 H 1.08992 * 109.47397 * 300.00319 * 12 11 9 40 40 H 1.09002 * 109.47398 * 300.00326 * 13 12 11 41 41 H 1.09001 * 109.47194 * 60.00507 * 13 12 11 42 42 H 1.00898 * 110.99877 * 56.04956 * 14 13 12 43 43 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 44 44 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 45 45 H 0.97000 * 119.99683 * 0.02562 * 18 16 15 46 46 H 0.96999 * 120.00403 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2379 -1.3652 0.7627 6 6 2.9195 -1.8905 -0.6602 7 6 2.0539 -0.7465 -1.2422 8 6 0.8896 -1.3134 -2.0570 9 6 2.8944 0.1704 -2.0931 10 8 3.0699 1.3213 -1.7535 11 7 3.4510 -0.2887 -3.2315 12 6 4.2677 0.6027 -4.0589 13 6 4.7761 -0.1613 -5.2831 14 7 5.5955 0.7325 -6.1124 15 6 6.1017 0.0316 -7.3001 16 6 6.9362 0.9778 -8.1242 17 8 7.0934 2.1236 -7.7584 18 7 7.5070 0.5514 -9.2682 19 6 8.2658 1.4123 -10.0182 20 1 8.4064 2.4323 -9.6920 21 6 8.8546 0.9725 -11.1974 22 7 9.5816 1.7979 -11.9165 23 14 8.6119 -0.7918 -11.7611 24 1 7.4061 -0.8743 -12.6240 25 1 9.8026 -1.2338 -12.5307 26 1 8.4341 -1.6698 -10.5767 27 1 -0.3634 -1.0276 0.0181 28 1 -0.3633 0.5294 0.8808 29 1 -0.3634 0.4981 -0.8988 30 1 4.0685 -0.6599 0.7346 31 1 3.4599 -2.1911 1.4386 32 1 2.3538 -2.8212 -0.6138 33 1 3.8331 -2.0207 -1.2403 34 1 1.2793 -1.8650 -2.9125 35 1 0.3000 -1.9831 -1.4308 36 1 0.2599 -0.4960 -2.4081 37 1 3.3109 -1.2094 -3.5029 38 1 5.1164 0.9623 -3.4771 39 1 3.6647 1.4506 -4.3838 40 1 5.3793 -1.0089 -4.9577 41 1 3.9276 -0.5211 -5.8650 42 1 6.3525 1.1299 -5.5767 43 1 6.7135 -0.8151 -6.9891 44 1 5.2621 -0.3263 -7.8961 45 1 7.3803 -0.3645 -9.5613 46 1 9.9924 1.4910 -12.7399 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131681068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:49 Heat of formation + Delta-G solvation = -144.375355 kcal Electronic energy + Delta-G solvation = -25726.002761 eV Core-core repulsion = 21842.429245 eV Total energy + Delta-G solvation = -3883.573517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.97208 -40.32547 -39.61297 -37.50484 -36.06057 -35.50821 -34.84967 -33.75064 -32.56708 -30.62344 -28.64880 -27.77242 -26.52086 -25.38285 -23.63693 -23.21209 -22.47513 -21.30095 -20.36024 -20.21733 -18.64513 -17.75436 -17.36556 -17.28436 -16.96549 -16.73172 -16.44801 -16.17906 -16.06209 -15.54865 -15.25903 -15.02927 -14.95040 -14.80643 -14.56681 -14.21743 -13.97083 -13.90936 -13.53038 -13.41185 -13.13981 -12.96742 -12.63446 -12.59118 -12.45213 -12.42427 -12.40525 -12.13878 -11.97172 -11.90530 -11.73766 -11.51321 -10.95983 -10.60115 -10.46192 -10.25362 -10.21284 -9.38877 -8.41152 -6.02793 1.30540 1.37134 1.45967 1.48298 1.90688 1.95733 2.23960 2.77254 2.84986 3.14992 3.32572 3.42620 3.63993 3.66940 3.83596 3.94269 4.08832 4.11945 4.16832 4.23994 4.39004 4.44914 4.45968 4.55346 4.59351 4.61332 4.66691 4.77800 4.83282 4.88599 4.92711 4.99698 5.01308 5.10505 5.13358 5.31174 5.37210 5.52296 5.87250 5.87646 6.00355 6.29018 6.44279 6.59373 6.87973 7.13884 7.39380 7.96631 8.76556 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.035542 B = 0.001902 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.601362 B =14719.333007 C =14939.130292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 H 0.057 0.943 4 O -0.390 6.390 5 C 0.035 3.965 6 C -0.134 4.134 7 C -0.106 4.106 8 C -0.136 4.136 9 C 0.522 3.478 10 O -0.583 6.583 11 N -0.706 5.706 12 C 0.125 3.875 13 C 0.060 3.940 14 N -0.692 5.692 15 C 0.066 3.934 16 C 0.445 3.555 17 O -0.618 6.618 18 N -0.589 5.589 19 C -0.331 4.331 20 H 0.052 0.948 21 C -0.018 4.018 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.227 1.227 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.062 0.938 37 H 0.419 0.581 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.345 0.655 43 H 0.084 0.916 44 H 0.121 0.879 45 H 0.391 0.609 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.150 -20.231 21.439 35.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 H 0.074 0.926 4 O -0.310 6.310 5 C -0.041 4.041 6 C -0.171 4.171 7 C -0.110 4.110 8 C -0.193 4.193 9 C 0.308 3.692 10 O -0.463 6.463 11 N -0.358 5.358 12 C 0.000 4.000 13 C -0.069 4.069 14 N -0.325 5.325 15 C -0.066 4.066 16 C 0.233 3.767 17 O -0.502 6.502 18 N -0.231 5.231 19 C -0.460 4.460 20 H 0.071 0.929 21 C -0.217 4.217 22 N -0.576 5.576 23 Si 0.788 3.212 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.150 1.150 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.257 0.743 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.164 0.836 43 H 0.102 0.898 44 H 0.139 0.861 45 H 0.227 0.773 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.425 -18.336 21.602 34.354 hybrid contribution 1.373 -0.575 -0.604 1.606 sum -18.052 -18.910 20.999 33.532 Atomic orbital electron populations 1.22024 0.91790 1.03883 1.02667 1.22795 0.96546 0.95516 0.83409 0.92554 1.88864 1.40310 1.67965 1.33822 1.23729 0.86899 0.96732 0.96711 1.23318 1.00574 0.97770 0.95458 1.22135 0.97372 0.95674 0.95811 1.22009 0.95568 1.01686 1.00056 1.20789 0.79258 0.87788 0.81321 1.90708 1.62270 1.21056 1.72273 1.45655 1.51342 1.15984 1.22859 1.21089 0.94565 0.93208 0.91119 1.22071 0.98388 0.93735 0.92668 1.59880 1.28112 1.35429 1.09060 1.21626 0.98906 0.93743 0.92337 1.21088 0.83404 0.89449 0.82798 1.90563 1.65116 1.22298 1.72267 1.42003 1.46702 1.12719 1.21669 1.19002 1.27582 0.95093 1.04313 0.92935 1.26191 0.95366 1.04718 0.95393 1.69814 1.33543 1.38476 1.15761 0.85318 0.79140 0.76616 0.80120 1.18104 1.20174 1.15035 0.89764 0.92470 0.90353 0.93792 0.86379 0.86385 0.88601 0.89769 0.88884 0.91855 0.74322 0.92842 0.92543 0.92016 0.88340 0.83619 0.89823 0.86147 0.77300 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.40 71.98 0.60 -1.32 16 2 C 0.08 1.37 3.67 30.97 0.11 1.48 16 3 H 0.06 1.43 6.43 -2.39 -0.02 1.42 16 4 O -0.39 -7.54 11.19 -148.98 -1.67 -9.21 16 5 C 0.04 0.48 7.72 72.66 0.56 1.04 16 6 C -0.13 -1.11 6.25 31.89 0.20 -0.91 16 7 C -0.11 -1.36 0.82 -51.94 -0.04 -1.40 16 8 C -0.14 -0.90 7.17 71.98 0.52 -0.38 16 9 C 0.52 10.13 6.45 87.66 0.57 10.69 16 10 O -0.58 -17.69 15.25 -3.01 -0.05 -17.73 16 11 N -0.71 -9.84 5.30 -463.07 -2.45 -12.30 16 12 C 0.12 2.42 5.93 86.38 0.51 2.93 16 13 C 0.06 0.98 5.80 86.30 0.50 1.48 16 14 N -0.69 -18.59 6.13 -517.91 -3.17 -21.76 16 15 C 0.07 1.80 6.17 85.56 0.53 2.33 16 16 C 0.44 19.50 7.82 87.66 0.69 20.19 16 17 O -0.62 -34.22 15.78 -3.08 -0.05 -34.27 16 18 N -0.59 -27.03 5.09 -306.99 -1.56 -28.59 16 19 C -0.33 -19.25 10.16 84.04 0.85 -18.40 16 20 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 21 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 22 N -0.94 -56.26 13.96 21.66 0.30 -55.96 16 23 Si 0.97 37.71 27.74 68.60 1.90 39.61 16 24 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 25 H -0.28 -10.76 7.11 99.48 0.71 -10.06 16 26 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 27 H 0.08 0.78 6.67 -2.38 -0.02 0.76 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.91 6.87 -2.39 -0.02 0.90 16 30 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.12 0.41 7.87 -2.39 -0.02 0.39 16 33 H 0.10 0.59 7.74 -2.39 -0.02 0.57 16 34 H 0.08 0.21 7.49 -2.39 -0.02 0.19 16 35 H 0.09 0.35 6.72 -2.39 -0.02 0.34 16 36 H 0.06 0.53 6.84 -2.39 -0.02 0.51 16 37 H 0.42 2.58 7.80 -92.70 -0.72 1.86 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.35 10.31 8.43 -89.70 -0.76 9.55 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.39 14.47 5.76 -92.71 -0.53 13.94 16 46 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -86.73 370.62 -1.73 -88.46 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: -1.05 Total: 34.55 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 6.06 Total: 17.19 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -6.89 Total: -118.61 kcal Atomic # 8 Polarization: -59.45 SS G_CDS: -1.76 Total: -61.21 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 1.90 Total: 39.61 kcal Total: -86.73 -1.73 -88.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131681068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.913 kcal (2) G-P(sol) polarization free energy of solvation -86.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds