Wall clock time and date at job start Tue Mar 31 2020 04:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.56972 * 2 1 4 4 C 1.53086 * 109.52182 * 239.84231 * 2 1 3 5 5 O 1.42906 * 109.41562 * 182.47992 * 4 2 1 6 6 C 1.42901 * 114.08997 * 61.16071 * 5 4 2 7 7 C 1.53089 * 109.41853 * 298.83783 * 6 5 4 8 8 C 1.53177 * 109.52162 * 120.15520 * 2 1 3 9 9 H 1.08997 * 109.61450 * 296.79710 * 8 2 1 10 10 C 1.50700 * 109.54161 * 57.02384 * 8 2 1 11 11 O 1.21276 * 120.00292 * 60.12767 * 10 8 2 12 12 N 1.34779 * 119.99832 * 240.12347 * 10 8 2 13 13 C 1.46497 * 120.00315 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.47311 * 180.02562 * 13 12 10 15 15 N 1.46903 * 109.47284 * 180.02562 * 14 13 12 16 16 C 1.46899 * 111.00040 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.46929 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00080 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00116 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00243 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99837 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00293 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99657 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00103 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47250 * 60.00180 * 24 22 20 26 26 H 1.48501 * 109.46965 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47215 * 299.99686 * 24 22 20 28 28 H 1.09003 * 109.47339 * 294.23247 * 1 2 3 29 29 H 1.09003 * 109.47617 * 54.23314 * 1 2 3 30 30 H 1.09003 * 109.46911 * 174.23773 * 1 2 3 31 31 H 1.09005 * 109.48102 * 62.50220 * 4 2 1 32 32 H 1.08997 * 109.48387 * 302.47152 * 4 2 1 33 33 H 1.09011 * 109.47547 * 178.86000 * 6 5 4 34 34 H 1.09004 * 109.49267 * 58.83368 * 6 5 4 35 35 H 1.09005 * 109.52279 * 297.70918 * 7 6 5 36 36 H 1.08994 * 109.57477 * 177.54826 * 7 6 5 37 37 H 0.97009 * 119.99841 * 0.02562 * 12 10 8 38 38 H 1.09003 * 109.46944 * 59.99695 * 13 12 10 39 39 H 1.08993 * 109.46908 * 300.00088 * 13 12 10 40 40 H 1.08995 * 109.47519 * 60.00213 * 14 13 12 41 41 H 1.09005 * 109.47364 * 299.99636 * 14 13 12 42 42 H 1.00901 * 110.99762 * 303.95103 * 15 14 13 43 43 H 1.08998 * 109.47185 * 299.99553 * 16 15 14 44 44 H 1.09001 * 109.46766 * 60.00109 * 16 15 14 45 45 H 0.96997 * 119.99489 * 0.02562 * 19 17 16 46 46 H 0.97005 * 119.99668 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4695 -0.7742 -1.2163 6 6 4.0043 -1.4815 -0.0957 7 6 3.5716 -0.7870 1.1981 8 6 2.0419 -0.7252 1.2483 9 1 1.7279 -0.1837 2.1406 10 6 1.4818 -2.1238 1.2840 11 8 1.7220 -2.8965 0.3806 12 7 0.7139 -2.5160 2.3199 13 6 0.1698 -3.8757 2.3550 14 6 -0.6597 -4.0605 3.6272 15 7 -1.2048 -5.4242 3.6626 16 6 -2.0083 -5.6386 4.8735 17 6 -2.5500 -7.0450 4.8743 18 8 -2.2916 -7.7950 3.9568 19 7 -3.3207 -7.4697 5.8952 20 6 -3.8130 -8.7492 5.8963 21 1 -3.5836 -9.4167 5.0788 22 6 -4.6080 -9.1868 6.9484 23 7 -4.8876 -8.3744 7.9428 24 14 -5.2794 -10.9300 6.9495 25 1 -4.1510 -11.8951 6.9269 26 1 -6.0912 -11.1470 8.1738 27 1 -6.1292 -11.1338 5.7489 28 1 -0.3634 0.4218 0.9371 29 1 -0.3634 0.6007 -0.8338 30 1 -0.3633 -1.0225 -0.1032 31 1 1.7159 -0.1885 -2.1389 32 1 1.6431 -1.7392 -1.2677 33 1 5.0926 -1.4902 -0.1572 34 1 3.6317 -2.5059 -0.1007 35 1 3.9780 0.2241 1.2223 36 1 3.9418 -1.3490 2.0556 37 1 0.5216 -1.8978 3.0424 38 1 0.9888 -4.5951 2.3470 39 1 -0.4632 -4.0363 1.4824 40 1 -1.4786 -3.3413 3.6347 41 1 -0.0269 -3.8998 4.5001 42 1 -1.7427 -5.6202 2.8318 43 1 -1.3847 -5.4886 5.7547 44 1 -2.8369 -4.9305 4.8897 45 1 -3.5270 -6.8700 6.6291 46 1 -5.4423 -8.6801 8.6775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133497436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:18 Heat of formation + Delta-G solvation = -127.461638 kcal Electronic energy + Delta-G solvation = -25787.751075 eV Core-core repulsion = 21904.910992 eV Total energy + Delta-G solvation = -3882.840083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14235 -38.57343 -38.25184 -36.31212 -34.82507 -34.39493 -33.76622 -32.52930 -31.26734 -29.60019 -27.38736 -26.41090 -25.36760 -23.90751 -22.73123 -22.34074 -21.71984 -19.96783 -19.29698 -17.93485 -17.22935 -16.61525 -16.52028 -16.19799 -15.91727 -15.83872 -15.56710 -14.83830 -14.70256 -14.51328 -14.39735 -14.07439 -13.55256 -13.54102 -13.26475 -13.17993 -12.92009 -12.73633 -12.42666 -12.37943 -12.06963 -11.93374 -11.56423 -11.51215 -11.49867 -11.33103 -11.04048 -11.03187 -10.92312 -10.45981 -10.23964 -10.03571 -9.52908 -9.29763 -9.29425 -8.54279 -8.17236 -7.99515 -6.44465 -3.85401 2.32421 2.80127 3.18668 3.24494 3.29133 3.69727 3.86680 4.07375 4.14336 4.23524 4.30121 4.38289 4.55036 4.68760 4.84217 4.93559 4.94269 5.02512 5.13139 5.13988 5.22760 5.23920 5.29003 5.32886 5.37804 5.48853 5.50569 5.66598 5.67965 5.73314 5.74634 5.79106 5.83430 5.89761 5.91560 6.17339 6.23043 7.01416 7.04610 7.19900 7.51978 7.52720 7.94497 8.02882 8.57873 9.14869 9.50584 10.01932 10.73110 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.039497 B = 0.001827 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.739378 B =15320.818694 C =15451.275862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 H 0.087 0.913 4 C 0.054 3.946 5 O -0.382 6.382 6 C 0.048 3.952 7 C -0.141 4.141 8 C -0.105 4.105 9 H 0.090 0.910 10 C 0.518 3.482 11 O -0.531 6.531 12 N -0.726 5.726 13 C 0.119 3.881 14 C 0.050 3.950 15 N -0.665 5.665 16 C 0.053 3.947 17 C 0.439 3.561 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.932 3.068 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.399 0.601 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.352 0.648 43 H 0.087 0.913 44 H 0.045 0.955 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.308 21.803 -9.771 26.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.130 4.130 3 H 0.106 0.894 4 C -0.023 4.023 5 O -0.301 6.301 6 C -0.029 4.029 7 C -0.179 4.179 8 C -0.126 4.126 9 H 0.108 0.892 10 C 0.304 3.696 11 O -0.408 6.408 12 N -0.378 5.378 13 C -0.005 4.005 14 C -0.081 4.081 15 N -0.299 5.299 16 C -0.080 4.080 17 C 0.224 3.776 18 O -0.466 6.466 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.759 3.241 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.233 0.767 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.172 0.828 43 H 0.105 0.895 44 H 0.063 0.937 45 H 0.225 0.775 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.199 20.477 -10.727 26.619 hybrid contribution -1.663 0.323 1.200 2.076 sum 11.536 20.800 -9.526 25.622 Atomic orbital electron populations 1.21832 0.94086 1.02535 1.02433 1.21669 0.96514 1.00143 0.94709 0.89432 1.22858 0.81360 1.01613 0.96439 1.87868 1.20299 1.76303 1.45605 1.22797 0.98506 0.96965 0.84584 1.22079 0.93002 1.02838 0.99960 1.21417 0.97196 0.93522 1.00498 0.89171 1.20541 0.78045 0.89337 0.81649 1.90639 1.58593 1.55210 1.36401 1.46049 1.52197 1.15220 1.24306 1.21294 0.98444 0.82747 0.97994 1.22077 0.97782 0.90540 0.97662 1.59931 1.41848 1.22681 1.05409 1.21669 0.95989 0.96505 0.93846 1.19769 0.83930 0.88839 0.85019 1.90534 1.62234 1.56679 1.37187 1.41848 1.44130 1.13725 1.20214 1.19662 1.27287 0.89005 1.07026 0.87928 1.25273 0.97379 1.00032 0.95267 1.69606 1.38367 1.36309 1.10038 0.85899 0.78899 0.81811 0.77513 1.19846 1.20973 1.19890 0.92114 0.91826 0.92291 0.89421 0.90302 0.89333 0.90265 0.90083 0.90517 0.76670 0.90152 0.91356 0.94962 0.90501 0.82804 0.89464 0.93729 0.77453 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.79 37.16 0.33 -0.66 16 2 C -0.11 -0.81 2.70 -90.48 -0.24 -1.05 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.05 0.51 5.84 37.20 0.22 0.73 16 5 O -0.38 -4.21 10.77 -35.23 -0.38 -4.58 16 6 C 0.05 0.45 6.55 37.20 0.24 0.70 16 7 C -0.14 -1.01 5.63 -26.59 -0.15 -1.16 16 8 C -0.10 -0.74 2.69 -91.59 -0.25 -0.99 16 9 H 0.09 0.43 7.92 -51.93 -0.41 0.02 16 10 C 0.52 4.99 5.29 -10.98 -0.06 4.93 16 11 O -0.53 -7.01 11.65 5.56 0.06 -6.94 16 12 N -0.73 -6.00 5.56 -60.30 -0.34 -6.33 16 13 C 0.12 1.26 5.93 -4.05 -0.02 1.24 16 14 C 0.05 0.53 5.80 -3.83 -0.02 0.51 16 15 N -0.67 -10.25 6.13 -115.06 -0.70 -10.96 16 16 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 17 C 0.44 10.24 7.82 -10.98 -0.09 10.16 16 18 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 19 N -0.56 -14.11 5.29 -10.96 -0.06 -14.17 16 20 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 7.36 -51.93 -0.38 0.10 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.91 5.71 -51.93 -0.30 0.62 16 33 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.08 0.92 5.69 -51.93 -0.30 0.62 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 2.20 8.31 -40.82 -0.34 1.86 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.35 5.65 8.43 -39.29 -0.33 5.32 16 43 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 370.11 15.07 5.58 5.58 Total: -1.00 -33.18 370.11 -7.75 -40.92 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.39 Total: 12.55 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -0.31 Total: 7.27 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.37 Total: -55.04 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.23 Total: -27.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.18 -7.75 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133497436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.538 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds