Wall clock time and date at job start Tue Mar 31 2020 04:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.56972 * 2 1 4 4 C 1.53086 * 109.52182 * 239.84231 * 2 1 3 5 5 O 1.42906 * 109.41562 * 182.47992 * 4 2 1 6 6 C 1.42901 * 114.08997 * 61.16071 * 5 4 2 7 7 C 1.53089 * 109.41853 * 298.83783 * 6 5 4 8 8 C 1.53177 * 109.52162 * 120.15520 * 2 1 3 9 9 H 1.08997 * 109.61450 * 296.79710 * 8 2 1 10 10 C 1.50700 * 109.54161 * 57.02384 * 8 2 1 11 11 O 1.21276 * 120.00292 * 60.12767 * 10 8 2 12 12 N 1.34779 * 119.99832 * 240.12347 * 10 8 2 13 13 C 1.46497 * 120.00315 * 180.02562 * 12 10 8 14 14 C 1.52993 * 109.47311 * 180.02562 * 13 12 10 15 15 N 1.46903 * 109.47284 * 180.02562 * 14 13 12 16 16 C 1.46899 * 111.00040 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.46929 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00080 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00116 * 179.97438 * 17 16 15 20 20 C 1.37092 * 120.00243 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99837 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00293 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99657 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00103 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47250 * 60.00180 * 24 22 20 26 26 H 1.48501 * 109.46965 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47215 * 299.99686 * 24 22 20 28 28 H 1.09003 * 109.47339 * 294.23247 * 1 2 3 29 29 H 1.09003 * 109.47617 * 54.23314 * 1 2 3 30 30 H 1.09003 * 109.46911 * 174.23773 * 1 2 3 31 31 H 1.09005 * 109.48102 * 62.50220 * 4 2 1 32 32 H 1.08997 * 109.48387 * 302.47152 * 4 2 1 33 33 H 1.09011 * 109.47547 * 178.86000 * 6 5 4 34 34 H 1.09004 * 109.49267 * 58.83368 * 6 5 4 35 35 H 1.09005 * 109.52279 * 297.70918 * 7 6 5 36 36 H 1.08994 * 109.57477 * 177.54826 * 7 6 5 37 37 H 0.97009 * 119.99841 * 0.02562 * 12 10 8 38 38 H 1.09003 * 109.46944 * 59.99695 * 13 12 10 39 39 H 1.08993 * 109.46908 * 300.00088 * 13 12 10 40 40 H 1.08995 * 109.47519 * 60.00213 * 14 13 12 41 41 H 1.09005 * 109.47364 * 299.99636 * 14 13 12 42 42 H 1.00901 * 110.99762 * 303.95103 * 15 14 13 43 43 H 1.08998 * 109.47185 * 299.99553 * 16 15 14 44 44 H 1.09001 * 109.46766 * 60.00109 * 16 15 14 45 45 H 0.96997 * 119.99489 * 0.02562 * 19 17 16 46 46 H 0.97005 * 119.99668 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7249 -1.2476 5 8 3.4695 -0.7742 -1.2163 6 6 4.0043 -1.4815 -0.0957 7 6 3.5716 -0.7870 1.1981 8 6 2.0419 -0.7252 1.2483 9 1 1.7279 -0.1837 2.1406 10 6 1.4818 -2.1238 1.2840 11 8 1.7220 -2.8965 0.3806 12 7 0.7139 -2.5160 2.3199 13 6 0.1698 -3.8757 2.3550 14 6 -0.6597 -4.0605 3.6272 15 7 -1.2048 -5.4242 3.6626 16 6 -2.0083 -5.6386 4.8735 17 6 -2.5500 -7.0450 4.8743 18 8 -2.2916 -7.7950 3.9568 19 7 -3.3207 -7.4697 5.8952 20 6 -3.8130 -8.7492 5.8963 21 1 -3.5836 -9.4167 5.0788 22 6 -4.6080 -9.1868 6.9484 23 7 -4.8876 -8.3744 7.9428 24 14 -5.2794 -10.9300 6.9495 25 1 -4.1510 -11.8951 6.9269 26 1 -6.0912 -11.1470 8.1738 27 1 -6.1292 -11.1338 5.7489 28 1 -0.3634 0.4218 0.9371 29 1 -0.3634 0.6007 -0.8338 30 1 -0.3633 -1.0225 -0.1032 31 1 1.7159 -0.1885 -2.1389 32 1 1.6431 -1.7392 -1.2677 33 1 5.0926 -1.4902 -0.1572 34 1 3.6317 -2.5059 -0.1007 35 1 3.9780 0.2241 1.2223 36 1 3.9418 -1.3490 2.0556 37 1 0.5216 -1.8978 3.0424 38 1 0.9888 -4.5951 2.3470 39 1 -0.4632 -4.0363 1.4824 40 1 -1.4786 -3.3413 3.6347 41 1 -0.0269 -3.8998 4.5001 42 1 -1.7427 -5.6202 2.8318 43 1 -1.3847 -5.4886 5.7547 44 1 -2.8369 -4.9305 4.8897 45 1 -3.5270 -6.8700 6.6291 46 1 -5.4423 -8.6801 8.6775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133497436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:17 Heat of formation + Delta-G solvation = -154.928419 kcal Electronic energy + Delta-G solvation = -25788.942124 eV Core-core repulsion = 21904.910992 eV Total energy + Delta-G solvation = -3884.031132 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.85117 -40.18310 -39.22693 -37.42147 -36.00051 -35.50953 -35.14080 -33.28010 -33.13730 -30.68823 -28.18602 -27.62817 -26.44474 -25.37228 -23.43596 -23.16707 -22.47982 -21.10937 -20.67668 -19.92444 -18.04695 -17.73559 -17.35933 -17.25614 -17.03643 -16.69400 -16.53664 -16.41003 -15.87711 -15.58545 -15.50652 -15.24188 -15.01812 -14.61870 -14.31679 -13.98580 -13.79222 -13.57015 -13.51686 -13.32112 -13.28051 -12.94283 -12.91496 -12.70687 -12.57013 -12.44094 -12.38939 -12.12809 -11.98728 -11.67190 -11.61851 -11.51377 -10.71956 -10.37889 -10.09569 -10.05645 -10.02615 -9.39485 -8.47528 -5.96206 1.39435 1.41682 1.52331 1.59277 2.02545 2.04800 2.30159 2.98998 3.02989 3.19782 3.50750 3.58946 3.69897 3.72982 3.88578 3.96649 4.10316 4.19283 4.30860 4.35924 4.45293 4.48982 4.49880 4.55834 4.60446 4.66493 4.70043 4.80536 4.84641 4.89213 4.92989 4.94923 5.07196 5.10296 5.19354 5.28374 5.40105 5.45911 5.83811 6.06223 6.28276 6.30673 6.54674 6.59383 7.11808 7.26279 7.55229 8.10940 8.69441 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.039497 B = 0.001827 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.739378 B =15320.818694 C =15451.275862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 H 0.106 0.894 4 C 0.049 3.951 5 O -0.400 6.400 6 C 0.042 3.958 7 C -0.137 4.137 8 C -0.101 4.101 9 H 0.126 0.874 10 C 0.513 3.487 11 O -0.573 6.573 12 N -0.712 5.712 13 C 0.129 3.871 14 C 0.059 3.941 15 N -0.687 5.687 16 C 0.069 3.931 17 C 0.434 3.566 18 O -0.626 6.626 19 N -0.572 5.572 20 C -0.336 4.336 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.918 5.918 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.272 1.272 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.417 0.583 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.345 0.655 43 H 0.109 0.891 44 H 0.073 0.927 45 H 0.398 0.602 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.212 24.213 -8.244 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 H 0.124 0.876 4 C -0.027 4.027 5 O -0.319 6.319 6 C -0.034 4.034 7 C -0.175 4.175 8 C -0.122 4.122 9 H 0.144 0.856 10 C 0.301 3.699 11 O -0.452 6.452 12 N -0.365 5.365 13 C 0.004 3.996 14 C -0.070 4.070 15 N -0.320 5.320 16 C -0.064 4.064 17 C 0.222 3.778 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.465 4.465 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.559 5.559 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.197 1.197 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.069 0.931 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.254 0.746 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.111 0.889 42 H 0.164 0.836 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.232 0.768 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.102 22.943 -9.155 27.962 hybrid contribution -1.580 -0.414 0.649 1.757 sum 11.522 22.529 -8.507 26.696 Atomic orbital electron populations 1.21812 0.93486 1.01379 1.03832 1.21656 0.96923 1.00543 0.93393 0.87579 1.22909 0.80784 1.00596 0.98443 1.87831 1.21099 1.76360 1.46645 1.22859 0.99069 0.95794 0.85714 1.22077 0.93100 1.03669 0.98618 1.21506 0.96975 0.91792 1.01936 0.85578 1.21124 0.77563 0.90176 0.81032 1.90646 1.59950 1.56636 1.38003 1.45878 1.51525 1.14454 1.24639 1.21002 0.97354 0.83624 0.97620 1.22073 0.98417 0.88536 0.97995 1.59901 1.41574 1.26009 1.04504 1.21523 0.97287 0.92206 0.95350 1.20952 0.82342 0.91095 0.83431 1.90504 1.63378 1.58781 1.38603 1.41913 1.44797 1.13154 1.21045 1.19618 1.29290 0.90323 1.07293 0.90456 1.26029 0.96985 1.03683 0.94539 1.69659 1.38364 1.37662 1.10232 0.84998 0.78243 0.77205 0.77954 1.19839 1.19388 1.19732 0.90170 0.91092 0.94572 0.88558 0.93128 0.88245 0.93112 0.88120 0.89633 0.74579 0.92630 0.92868 0.92491 0.88861 0.83637 0.87270 0.90916 0.76825 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.79 71.98 0.63 -0.99 16 2 C -0.11 -1.32 2.70 -10.70 -0.03 -1.35 16 3 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 4 C 0.05 0.93 5.84 72.01 0.42 1.35 16 5 O -0.40 -8.82 10.77 -148.98 -1.60 -10.42 16 6 C 0.04 0.79 6.55 72.01 0.47 1.26 16 7 C -0.14 -1.67 5.63 30.68 0.17 -1.50 16 8 C -0.10 -1.18 2.69 -11.42 -0.03 -1.21 16 9 H 0.13 0.60 7.92 -2.39 -0.02 0.58 16 10 C 0.51 9.43 5.29 87.66 0.46 9.90 16 11 O -0.57 -15.77 11.65 -3.02 -0.04 -15.80 16 12 N -0.71 -10.48 5.56 -463.08 -2.57 -13.05 16 13 C 0.13 2.66 5.93 86.38 0.51 3.17 16 14 C 0.06 1.12 5.80 86.30 0.50 1.62 16 15 N -0.69 -20.38 6.13 -517.93 -3.17 -23.55 16 16 C 0.07 2.19 6.17 85.56 0.53 2.71 16 17 C 0.43 20.34 7.82 87.66 0.69 21.02 16 18 O -0.63 -34.81 15.78 -3.06 -0.05 -34.86 16 19 N -0.57 -28.92 5.29 -306.98 -1.62 -30.54 16 20 C -0.34 -19.00 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.66 5.50 84.92 0.47 -0.19 16 23 N -0.92 -48.92 13.05 21.66 0.28 -48.63 16 24 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.57 7.36 -2.39 -0.02 0.55 16 31 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.05 1.26 5.71 -2.39 -0.01 1.24 16 33 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.05 1.25 5.69 -2.39 -0.01 1.24 16 35 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.42 3.13 8.31 -92.70 -0.77 2.36 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.35 11.05 8.43 -89.69 -0.76 10.30 16 43 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.40 18.85 7.90 -92.71 -0.73 18.12 16 46 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 Total: -1.00 -75.02 370.11 -2.38 -77.40 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -1.25 Total: 37.07 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 5.61 Total: 17.62 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -7.09 Total: -115.77 kcal Atomic # 8 Polarization: -59.40 SS G_CDS: -1.69 Total: -61.09 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -75.02 -2.38 -77.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133497436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.529 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds