Wall clock time and date at job start Tue Mar 31 2020 04:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47333 * 2 1 4 4 C 1.53005 * 109.47027 * 239.99319 * 2 1 3 5 5 C 1.52998 * 109.46994 * 174.06741 * 4 2 1 6 6 H 1.09004 * 109.47204 * 304.08660 * 5 4 2 7 7 C 1.52999 * 109.46803 * 184.09251 * 5 4 2 8 8 N 1.46499 * 109.47584 * 64.08620 * 5 4 2 9 9 C 1.34768 * 120.00403 * 206.41678 * 8 5 4 10 10 O 1.21287 * 120.00026 * 5.12308 * 9 8 5 11 11 C 1.50702 * 120.00150 * 185.12461 * 9 8 5 12 12 N 1.46503 * 109.47213 * 183.80688 * 11 9 8 13 13 C 1.46090 * 118.72864 * 269.73326 * 12 11 9 14 14 C 1.53209 * 109.82173 * 161.46550 * 13 12 11 15 15 O 1.43240 * 108.51466 * 49.54181 * 14 13 12 16 16 C 1.42963 * 112.98595 * 291.45430 * 15 14 13 17 17 C 1.33872 * 118.72683 * 89.99640 * 12 11 9 18 18 O 1.21276 * 118.83555 * 1.88813 * 17 12 11 19 19 N 1.46508 * 109.46919 * 119.99865 * 2 1 3 20 20 C 1.36941 * 119.99747 * 270.63095 * 19 2 1 21 21 H 1.08005 * 119.99849 * 350.72651 * 20 19 2 22 22 C 1.38805 * 119.99819 * 170.72498 * 20 19 2 23 23 N 1.31624 * 119.99845 * 178.47514 * 22 20 19 24 24 Si 1.86798 * 120.00343 * 358.47882 * 22 20 19 25 25 H 1.48507 * 109.47003 * 90.94507 * 24 22 20 26 26 H 1.48500 * 109.47499 * 210.94695 * 24 22 20 27 27 H 1.48500 * 109.47105 * 330.95079 * 24 22 20 28 28 H 1.09000 * 109.46752 * 300.00786 * 1 2 3 29 29 H 1.09002 * 109.47211 * 60.00151 * 1 2 3 30 30 H 1.08992 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46956 * 294.06717 * 4 2 1 32 32 H 1.08998 * 109.46643 * 54.06542 * 4 2 1 33 33 H 1.09005 * 109.46919 * 299.99157 * 7 5 4 34 34 H 1.08991 * 109.47517 * 59.99857 * 7 5 4 35 35 H 1.09006 * 109.47064 * 179.97438 * 7 5 4 36 36 H 0.97004 * 119.99265 * 26.41703 * 8 5 4 37 37 H 1.08997 * 109.46943 * 303.80702 * 11 9 8 38 38 H 1.09002 * 109.46923 * 63.80527 * 11 9 8 39 39 H 1.08998 * 109.39621 * 281.77997 * 13 12 11 40 40 H 1.08997 * 109.39613 * 41.50178 * 13 12 11 41 41 H 1.08994 * 109.82873 * 289.74261 * 14 13 12 42 42 H 1.09001 * 109.66641 * 169.23742 * 14 13 12 43 43 H 1.09003 * 109.41932 * 289.49625 * 16 15 14 44 44 H 1.09005 * 109.36027 * 169.66825 * 16 15 14 45 45 H 0.96996 * 119.99846 * 90.63030 * 19 2 1 46 46 H 0.96999 * 120.00167 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5627 -0.5936 -1.3260 6 1 3.8404 0.4602 -1.3044 7 6 4.0626 -1.2262 -2.6263 8 7 4.1688 -1.2817 -0.1835 9 6 5.3752 -0.8931 0.2747 10 8 5.9173 0.0837 -0.1975 11 6 6.0507 -1.6724 1.3736 12 7 7.2966 -1.0016 1.7532 13 6 8.5305 -1.3691 1.0628 14 6 9.5829 -0.2736 1.2612 15 8 9.6577 0.0378 2.6573 16 6 8.4826 0.6874 3.1482 17 6 7.2612 -0.0794 2.7229 18 8 6.2068 0.1452 3.2783 19 7 2.0183 -0.6906 1.1963 20 6 2.2342 0.0115 2.3520 21 1 2.1902 1.0906 2.3445 22 6 2.5096 -0.6637 3.5331 23 7 2.7467 0.0119 4.6375 24 14 2.5437 -2.5313 3.5552 25 1 3.9237 -3.0044 3.2774 26 1 2.1127 -3.0185 4.8901 27 1 1.6220 -3.0556 2.5156 28 1 -0.3633 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7660 -1.7751 -1.1975 32 1 1.5924 -0.2727 -2.1360 33 1 3.7849 -2.2800 -2.6478 34 1 3.6117 -0.7142 -3.4763 35 1 5.1474 -1.1347 -2.6813 36 1 3.7018 -2.0171 0.2432 37 1 5.3898 -1.7279 2.2386 38 1 6.2731 -2.6795 1.0209 39 1 8.9034 -2.3112 1.4648 40 1 8.3285 -1.4862 -0.0019 41 1 9.2985 0.6179 0.7023 42 1 10.5528 -0.6292 0.9134 43 1 8.4332 1.6994 2.7463 44 1 8.5220 0.7314 4.2366 45 1 2.1887 -1.6451 1.1696 46 1 2.9387 -0.4599 5.4629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134601467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:58 Heat of formation + Delta-G solvation = -82.545546 kcal Electronic energy + Delta-G solvation = -28637.864398 eV Core-core repulsion = 24756.972023 eV Total energy + Delta-G solvation = -3880.892375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.54614 -39.18884 -37.44904 -36.88309 -35.04456 -34.19311 -32.22764 -31.06532 -30.14310 -29.15902 -28.55616 -26.42684 -25.76212 -23.78591 -23.22494 -21.44145 -20.45383 -19.74359 -18.83031 -17.55104 -17.45615 -17.05371 -16.79027 -15.84510 -15.62482 -15.26189 -14.80441 -14.57051 -14.35464 -14.17264 -13.97158 -13.42298 -13.29518 -13.13359 -12.97617 -12.89186 -12.63168 -12.42410 -12.08146 -12.02197 -11.78876 -11.65030 -11.60451 -11.28876 -11.01153 -10.80438 -10.70118 -10.44676 -10.41126 -10.32372 -9.96177 -9.63672 -9.45850 -9.13716 -8.86764 -8.50556 -8.40043 -7.11600 -5.61454 -2.96805 2.76527 3.02254 3.15852 3.27886 3.36361 3.45090 3.67814 3.82598 4.46107 4.64697 4.79030 4.94181 4.98600 5.13138 5.15556 5.29323 5.32597 5.35856 5.38839 5.41464 5.51949 5.61170 5.67682 5.68371 5.75707 5.85796 5.88542 5.91727 6.06848 6.17436 6.23061 6.34163 6.41587 6.44147 6.49527 6.76410 6.83813 6.99658 7.05033 7.58175 7.97524 8.13653 8.45909 8.55801 8.72952 9.31842 10.03500 10.22782 11.57471 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.006112 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.350227 B = 4580.005152 C = 5981.765914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.176 3.824 3 H 0.057 0.943 4 C -0.136 4.136 5 C 0.149 3.851 6 H 0.086 0.914 7 C -0.160 4.160 8 N -0.701 5.701 9 C 0.516 3.484 10 O -0.548 6.548 11 C 0.086 3.914 12 N -0.591 5.591 13 C 0.087 3.913 14 C 0.046 3.954 15 O -0.375 6.375 16 C 0.055 3.945 17 C 0.475 3.525 18 O -0.488 6.488 19 N -0.738 5.738 20 C -0.241 4.241 21 H 0.085 0.915 22 C 0.019 3.981 23 N -0.917 5.917 24 Si 0.865 3.135 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.395 0.605 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.351 0.649 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.137 -5.579 -12.690 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 H 0.075 0.925 4 C -0.175 4.175 5 C 0.044 3.956 6 H 0.105 0.895 7 C -0.219 4.219 8 N -0.353 5.353 9 C 0.301 3.699 10 O -0.426 6.426 11 C -0.041 4.041 12 N -0.326 5.326 13 C -0.036 4.036 14 C -0.031 4.031 15 O -0.294 6.294 16 C -0.025 4.025 17 C 0.261 3.739 18 O -0.360 6.360 19 N -0.381 5.381 20 C -0.371 4.371 21 H 0.103 0.897 22 C -0.177 4.177 23 N -0.564 5.564 24 Si 0.696 3.304 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.204 1.204 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.231 0.769 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.129 0.871 43 H 0.107 0.893 44 H 0.147 0.853 45 H 0.183 0.817 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.148 -4.587 -12.394 16.662 hybrid contribution -0.503 -1.766 0.156 1.843 sum 9.645 -6.353 -12.238 16.827 Atomic orbital electron populations 1.22415 0.99073 1.00577 1.00409 1.20232 0.91584 0.96050 0.85484 0.92472 1.22264 0.94018 1.01448 0.99768 1.20823 0.92397 0.97947 0.84407 0.89542 1.22200 1.01478 1.00758 0.97442 1.45877 1.19094 1.37053 1.33275 1.20769 0.81536 0.84887 0.82675 1.90604 1.65677 1.26615 1.59710 1.21427 0.87907 0.95122 0.99636 1.46947 1.07476 1.40965 1.37250 1.22095 0.84555 0.98775 0.98190 1.22979 0.99490 0.97673 0.82953 1.88128 1.37908 1.79204 1.24116 1.22844 0.81475 0.95987 1.02153 1.21010 0.92019 0.80708 0.80204 1.91061 1.30075 1.62506 1.52370 1.42722 1.79808 1.06323 1.09277 1.18909 1.41144 0.92317 0.84716 0.89715 1.24602 1.01727 0.95972 0.95443 1.69644 1.53619 1.33649 0.99483 0.86903 0.77237 0.88982 0.77276 1.21223 1.21900 1.20381 0.92388 0.94373 0.93876 0.91980 0.90582 0.92845 0.91970 0.92678 0.76932 0.85802 0.88454 0.91112 0.90006 0.91546 0.87118 0.89300 0.85326 0.81660 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.52 37.16 0.35 -2.47 16 2 C 0.18 3.27 2.90 -67.92 -0.20 3.07 16 3 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 4 C -0.14 -1.94 4.44 -26.73 -0.12 -2.06 16 5 C 0.15 2.26 2.65 -67.93 -0.18 2.08 16 6 H 0.09 1.55 7.47 -51.93 -0.39 1.16 16 7 C -0.16 -1.92 9.50 37.16 0.35 -1.57 16 8 N -0.70 -11.81 3.78 -53.81 -0.20 -12.01 16 9 C 0.52 9.68 7.86 -10.99 -0.09 9.59 16 10 O -0.55 -11.60 16.04 5.55 0.09 -11.51 16 11 C 0.09 1.49 5.80 -5.19 -0.03 1.46 16 12 N -0.59 -9.83 2.32 -175.67 -0.41 -10.24 16 13 C 0.09 1.02 6.63 -4.16 -0.03 0.99 16 14 C 0.05 0.49 6.91 37.27 0.26 0.75 16 15 O -0.38 -4.89 10.85 -35.23 -0.38 -5.27 16 16 C 0.05 0.80 6.98 35.84 0.25 1.05 16 17 C 0.47 9.11 7.58 -11.56 -0.09 9.02 16 18 O -0.49 -12.25 16.36 5.56 0.09 -12.16 16 19 N -0.74 -16.48 3.40 -53.42 -0.18 -16.66 16 20 C -0.24 -6.75 10.42 -15.06 -0.16 -6.91 16 21 H 0.09 2.68 8.05 -52.48 -0.42 2.26 16 22 C 0.02 0.57 5.50 -17.43 -0.10 0.47 16 23 N -0.92 -29.50 13.97 55.49 0.78 -28.73 16 24 Si 0.86 21.40 27.45 -169.99 -4.67 16.74 16 25 H -0.28 -6.66 6.40 56.52 0.36 -6.30 16 26 H -0.29 -7.58 7.11 56.52 0.40 -7.17 16 27 H -0.28 -6.37 6.68 56.52 0.38 -5.99 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 6.48 6.67 -40.82 -0.27 6.20 16 37 H 0.12 2.65 6.33 -51.93 -0.33 2.33 16 38 H 0.10 1.28 8.04 -51.93 -0.42 0.86 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 41 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.13 1.73 8.14 -51.93 -0.42 1.30 16 45 H 0.35 7.50 4.13 -40.82 -0.17 7.33 16 46 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -36.94 371.99 -6.57 -43.51 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -7.53 Total: 15.25 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 0.23 Total: 15.48 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -0.02 Total: -67.65 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.20 Total: -28.94 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.94 -6.57 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134601467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.036 kcal (2) G-P(sol) polarization free energy of solvation -36.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds