Wall clock time and date at job start Tue Mar 31 2020 04:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47333 * 2 1 4 4 C 1.53005 * 109.47027 * 239.99319 * 2 1 3 5 5 C 1.52998 * 109.46994 * 174.06741 * 4 2 1 6 6 H 1.09004 * 109.47204 * 304.08660 * 5 4 2 7 7 C 1.52999 * 109.46803 * 184.09251 * 5 4 2 8 8 N 1.46499 * 109.47584 * 64.08620 * 5 4 2 9 9 C 1.34768 * 120.00403 * 206.41678 * 8 5 4 10 10 O 1.21287 * 120.00026 * 5.12308 * 9 8 5 11 11 C 1.50702 * 120.00150 * 185.12461 * 9 8 5 12 12 N 1.46503 * 109.47213 * 183.80688 * 11 9 8 13 13 C 1.46090 * 118.72864 * 269.73326 * 12 11 9 14 14 C 1.53209 * 109.82173 * 161.46550 * 13 12 11 15 15 O 1.43240 * 108.51466 * 49.54181 * 14 13 12 16 16 C 1.42963 * 112.98595 * 291.45430 * 15 14 13 17 17 C 1.33872 * 118.72683 * 89.99640 * 12 11 9 18 18 O 1.21276 * 118.83555 * 1.88813 * 17 12 11 19 19 N 1.46508 * 109.46919 * 119.99865 * 2 1 3 20 20 C 1.36941 * 119.99747 * 270.63095 * 19 2 1 21 21 H 1.08005 * 119.99849 * 350.72651 * 20 19 2 22 22 C 1.38805 * 119.99819 * 170.72498 * 20 19 2 23 23 N 1.31624 * 119.99845 * 178.47514 * 22 20 19 24 24 Si 1.86798 * 120.00343 * 358.47882 * 22 20 19 25 25 H 1.48507 * 109.47003 * 90.94507 * 24 22 20 26 26 H 1.48500 * 109.47499 * 210.94695 * 24 22 20 27 27 H 1.48500 * 109.47105 * 330.95079 * 24 22 20 28 28 H 1.09000 * 109.46752 * 300.00786 * 1 2 3 29 29 H 1.09002 * 109.47211 * 60.00151 * 1 2 3 30 30 H 1.08992 * 109.47394 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46956 * 294.06717 * 4 2 1 32 32 H 1.08998 * 109.46643 * 54.06542 * 4 2 1 33 33 H 1.09005 * 109.46919 * 299.99157 * 7 5 4 34 34 H 1.08991 * 109.47517 * 59.99857 * 7 5 4 35 35 H 1.09006 * 109.47064 * 179.97438 * 7 5 4 36 36 H 0.97004 * 119.99265 * 26.41703 * 8 5 4 37 37 H 1.08997 * 109.46943 * 303.80702 * 11 9 8 38 38 H 1.09002 * 109.46923 * 63.80527 * 11 9 8 39 39 H 1.08998 * 109.39621 * 281.77997 * 13 12 11 40 40 H 1.08997 * 109.39613 * 41.50178 * 13 12 11 41 41 H 1.08994 * 109.82873 * 289.74261 * 14 13 12 42 42 H 1.09001 * 109.66641 * 169.23742 * 14 13 12 43 43 H 1.09003 * 109.41932 * 289.49625 * 16 15 14 44 44 H 1.09005 * 109.36027 * 169.66825 * 16 15 14 45 45 H 0.96996 * 119.99846 * 90.63030 * 19 2 1 46 46 H 0.96999 * 120.00167 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5627 -0.5936 -1.3260 6 1 3.8404 0.4602 -1.3044 7 6 4.0626 -1.2262 -2.6263 8 7 4.1688 -1.2817 -0.1835 9 6 5.3752 -0.8931 0.2747 10 8 5.9173 0.0837 -0.1975 11 6 6.0507 -1.6724 1.3736 12 7 7.2966 -1.0016 1.7532 13 6 8.5305 -1.3691 1.0628 14 6 9.5829 -0.2736 1.2612 15 8 9.6577 0.0378 2.6573 16 6 8.4826 0.6874 3.1482 17 6 7.2612 -0.0794 2.7229 18 8 6.2068 0.1452 3.2783 19 7 2.0183 -0.6906 1.1963 20 6 2.2342 0.0115 2.3520 21 1 2.1902 1.0906 2.3445 22 6 2.5096 -0.6637 3.5331 23 7 2.7467 0.0119 4.6375 24 14 2.5437 -2.5313 3.5552 25 1 3.9237 -3.0044 3.2774 26 1 2.1127 -3.0185 4.8901 27 1 1.6220 -3.0556 2.5156 28 1 -0.3633 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.7660 -1.7751 -1.1975 32 1 1.5924 -0.2727 -2.1360 33 1 3.7849 -2.2800 -2.6478 34 1 3.6117 -0.7142 -3.4763 35 1 5.1474 -1.1347 -2.6813 36 1 3.7018 -2.0171 0.2432 37 1 5.3898 -1.7279 2.2386 38 1 6.2731 -2.6795 1.0209 39 1 8.9034 -2.3112 1.4648 40 1 8.3285 -1.4862 -0.0019 41 1 9.2985 0.6179 0.7023 42 1 10.5528 -0.6292 0.9134 43 1 8.4332 1.6994 2.7463 44 1 8.5220 0.7314 4.2366 45 1 2.1887 -1.6451 1.1696 46 1 2.9387 -0.4599 5.4629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134601467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:57 Heat of formation + Delta-G solvation = -111.864529 kcal Electronic energy + Delta-G solvation = -28639.135764 eV Core-core repulsion = 24756.972023 eV Total energy + Delta-G solvation = -3882.163742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.87492 -40.56967 -38.72882 -38.42251 -36.40676 -35.78227 -34.10336 -32.60789 -31.31267 -30.83476 -29.85835 -27.62353 -26.99931 -25.27651 -24.86596 -22.75087 -21.94188 -21.24614 -20.08791 -19.54434 -18.75852 -18.41786 -18.10010 -17.19392 -16.83699 -16.55853 -16.45238 -16.09984 -15.83409 -15.61522 -15.21777 -14.94571 -14.76936 -14.44558 -14.37488 -14.25419 -14.12462 -13.95961 -13.50125 -13.38680 -13.03384 -12.87121 -12.78719 -12.68993 -12.50676 -12.32950 -12.25040 -12.09842 -11.84189 -11.63969 -11.59626 -11.46050 -11.09216 -10.88078 -10.49101 -9.95019 -9.77963 -9.13518 -7.90333 -5.22693 1.27600 1.36099 1.39566 1.46139 1.68687 1.74387 2.44574 2.53412 2.73701 3.31507 3.44163 3.60290 3.77177 3.79669 3.89732 4.02548 4.09261 4.13115 4.16887 4.32694 4.36728 4.40365 4.48184 4.53957 4.64783 4.69632 4.78717 4.79842 4.84361 4.89749 5.03721 5.06529 5.11298 5.18749 5.34722 5.37570 5.57690 5.70382 5.72546 5.88191 6.28163 6.29521 6.58380 7.04631 7.19564 7.30909 7.91502 8.12899 9.32392 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.006112 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.350227 B = 4580.005152 C = 5981.765914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.166 3.834 3 H 0.023 0.977 4 C -0.121 4.121 5 C 0.144 3.856 6 H 0.049 0.951 7 C -0.147 4.147 8 N -0.697 5.697 9 C 0.509 3.491 10 O -0.581 6.581 11 C 0.083 3.917 12 N -0.589 5.589 13 C 0.079 3.921 14 C 0.043 3.957 15 O -0.374 6.374 16 C 0.065 3.935 17 C 0.463 3.537 18 O -0.566 6.566 19 N -0.733 5.733 20 C -0.221 4.221 21 H 0.028 0.972 22 C -0.052 4.052 23 N -0.976 5.976 24 Si 0.937 3.063 25 H -0.264 1.264 26 H -0.308 1.308 27 H -0.238 1.238 28 H 0.022 0.978 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.399 0.601 37 H 0.083 0.917 38 H 0.147 0.853 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.155 0.845 43 H 0.097 0.903 44 H 0.137 0.863 45 H 0.361 0.639 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.882 -9.009 -16.217 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.160 4.160 5 C 0.040 3.960 6 H 0.068 0.932 7 C -0.205 4.205 8 N -0.348 5.348 9 C 0.295 3.705 10 O -0.461 6.461 11 C -0.044 4.044 12 N -0.322 5.322 13 C -0.042 4.042 14 C -0.034 4.034 15 O -0.292 6.292 16 C -0.014 4.014 17 C 0.251 3.749 18 O -0.444 6.444 19 N -0.378 5.378 20 C -0.352 4.352 21 H 0.046 0.954 22 C -0.244 4.244 23 N -0.626 5.626 24 Si 0.764 3.236 25 H -0.190 1.190 26 H -0.236 1.236 27 H -0.161 1.161 28 H 0.041 0.959 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.235 0.765 37 H 0.101 0.899 38 H 0.164 0.836 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.173 0.827 43 H 0.115 0.885 44 H 0.154 0.846 45 H 0.195 0.805 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.901 -8.060 -16.048 21.008 hybrid contribution -0.718 -0.568 1.143 1.464 sum 10.183 -8.628 -14.905 20.007 Atomic orbital electron populations 1.22268 0.97232 1.01540 1.00470 1.20472 0.92845 0.94760 0.86087 0.95915 1.22186 0.93022 1.02494 0.98271 1.20973 0.93199 0.96271 0.85587 0.93238 1.22069 1.00705 1.01994 0.95716 1.45940 1.18439 1.36874 1.33555 1.21058 0.82107 0.84584 0.82752 1.90580 1.66658 1.27868 1.61020 1.21480 0.87868 0.97540 0.97495 1.47175 1.08926 1.39664 1.36441 1.22500 0.82601 1.00306 0.98796 1.23279 1.01355 0.97229 0.81507 1.88141 1.36393 1.78971 1.25688 1.22708 0.80353 0.95606 1.02758 1.21874 0.92355 0.80741 0.79964 1.91030 1.32954 1.65125 1.55268 1.42557 1.80138 1.06527 1.08624 1.18622 1.39521 0.90152 0.86934 0.95386 1.25452 1.02003 1.02247 0.94706 1.69907 1.56150 1.36188 1.00314 0.85733 0.79017 0.81427 0.77436 1.18999 1.23626 1.16143 0.95852 0.90875 0.92323 0.89426 0.87014 0.90584 0.89793 0.93898 0.76454 0.89930 0.83558 0.88289 0.88446 0.92332 0.82728 0.88531 0.84570 0.80477 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.05 9.52 71.98 0.69 -4.36 16 2 C 0.17 6.06 2.90 44.99 0.13 6.19 16 3 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 4 C -0.12 -3.04 4.44 30.60 0.14 -2.91 16 5 C 0.14 4.10 2.65 44.99 0.12 4.22 16 6 H 0.05 1.79 7.47 -2.39 -0.02 1.77 16 7 C -0.15 -2.97 9.50 71.98 0.68 -2.29 16 8 N -0.70 -22.57 3.78 -442.54 -1.67 -24.24 16 9 C 0.51 19.05 7.86 87.66 0.69 19.74 16 10 O -0.58 -25.05 16.04 -3.05 -0.05 -25.10 16 11 C 0.08 2.85 5.80 85.63 0.50 3.34 16 12 N -0.59 -19.36 2.32 -828.59 -1.93 -21.28 16 13 C 0.08 1.64 6.63 86.53 0.57 2.21 16 14 C 0.04 0.79 6.91 72.05 0.50 1.29 16 15 O -0.37 -9.10 10.85 -148.98 -1.62 -10.72 16 16 C 0.07 1.94 6.98 71.13 0.50 2.44 16 17 C 0.46 18.46 7.58 87.69 0.66 19.12 16 18 O -0.57 -30.55 16.36 -3.02 -0.05 -30.60 16 19 N -0.73 -32.81 3.40 -322.92 -1.10 -33.91 16 20 C -0.22 -13.06 10.42 84.03 0.88 -12.18 16 21 H 0.03 1.94 8.05 -2.91 -0.02 1.91 16 22 C -0.05 -3.19 5.50 84.86 0.47 -2.73 16 23 N -0.98 -67.00 13.97 21.65 0.30 -66.69 16 24 Si 0.94 44.94 27.45 68.60 1.88 46.82 16 25 H -0.26 -11.71 6.40 99.48 0.64 -11.07 16 26 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 27 H -0.24 -9.73 6.68 99.48 0.66 -9.06 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.40 12.13 6.67 -92.71 -0.62 11.51 16 37 H 0.08 3.61 6.33 -2.39 -0.02 3.60 16 38 H 0.15 3.40 8.04 -2.39 -0.02 3.38 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.10 1.76 8.13 -2.39 -0.02 1.74 16 41 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 42 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.14 3.78 8.14 -2.38 -0.02 3.76 16 45 H 0.36 14.71 4.13 -92.71 -0.38 14.33 16 46 H 0.25 16.54 8.31 -92.71 -0.77 15.76 16 Total: -1.00 -91.32 371.99 2.16 -89.16 By element: Atomic # 1 Polarization: 42.60 SS G_CDS: -0.13 Total: 42.47 kcal Atomic # 6 Polarization: 27.57 SS G_CDS: 6.52 Total: 34.09 kcal Atomic # 7 Polarization: -141.73 SS G_CDS: -4.39 Total: -146.13 kcal Atomic # 8 Polarization: -64.70 SS G_CDS: -1.71 Total: -66.42 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.82 kcal Total: -91.32 2.16 -89.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134601467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.708 kcal (2) G-P(sol) polarization free energy of solvation -91.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds