Wall clock time and date at job start Tue Mar 31 2020 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46865 * 2 1 4 4 C 1.50702 * 109.47092 * 120.00279 * 2 1 3 5 5 N 1.34771 * 119.99972 * 300.00228 * 4 2 1 6 6 O 1.21277 * 119.99561 * 119.99811 * 4 2 1 7 7 C 1.50702 * 109.46878 * 240.00261 * 2 1 3 8 8 O 1.21281 * 119.99862 * 239.99753 * 7 2 1 9 9 N 1.34780 * 119.99774 * 60.00014 * 7 2 1 10 10 C 1.46507 * 119.99613 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46822 * 179.97438 * 10 9 7 12 12 H 1.09006 * 108.57099 * 57.95070 * 11 10 9 13 13 C 1.46922 * 108.61956 * 175.75511 * 11 10 9 14 14 N 1.50116 * 106.77898 * 177.91971 * 13 11 10 15 15 C 1.36934 * 120.63273 * 111.32597 * 14 13 11 16 16 H 1.07994 * 120.00254 * 320.52243 * 15 14 13 17 17 C 1.38815 * 119.99977 * 140.51874 * 15 14 13 18 18 N 1.31614 * 120.00075 * 156.55129 * 17 15 14 19 19 Si 1.86805 * 120.00042 * 336.55760 * 17 15 14 20 20 H 1.48502 * 109.46970 * 95.54769 * 19 17 15 21 21 H 1.48491 * 109.47224 * 215.55044 * 19 17 15 22 22 H 1.48503 * 109.46906 * 335.55109 * 19 17 15 23 23 C 1.43419 * 118.72729 * 291.35085 * 14 13 11 24 24 C 1.55321 * 116.24109 * 89.35668 * 23 14 13 25 25 C 1.55188 * 108.87408 * 319.46050 * 24 23 14 26 26 O 1.39641 * 110.56943 * 322.14602 * 25 24 23 27 27 H 1.09007 * 109.47052 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47424 * 59.99551 * 1 2 3 29 29 H 1.08996 * 109.47090 * 299.99450 * 1 2 3 30 30 H 1.08996 * 109.46817 * 60.00382 * 3 2 1 31 31 H 1.09003 * 109.46972 * 179.97438 * 3 2 1 32 32 H 1.08990 * 109.47665 * 300.00227 * 3 2 1 33 33 H 0.96999 * 120.00024 * 359.97438 * 5 4 2 34 34 H 0.97000 * 120.00110 * 180.02562 * 5 4 2 35 35 H 0.96997 * 120.00544 * 359.97438 * 9 7 2 36 36 H 1.09003 * 109.47116 * 300.00042 * 10 9 7 37 37 H 1.08999 * 109.46702 * 59.99855 * 10 9 7 38 38 H 1.08997 * 109.99097 * 297.24095 * 13 11 10 39 39 H 1.09004 * 109.98463 * 58.60704 * 13 11 10 40 40 H 0.96999 * 120.00266 * 180.02562 * 18 17 15 41 41 H 1.09002 * 108.12541 * 327.58969 * 23 14 13 42 42 H 1.09007 * 107.96148 * 210.99008 * 23 14 13 43 43 H 1.09005 * 109.57027 * 199.64818 * 24 23 14 44 44 H 1.09004 * 109.57180 * 79.27872 * 24 23 14 45 45 H 1.08997 * 109.26159 * 201.86183 * 25 24 23 46 46 H 1.08999 * 109.25648 * 82.42542 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7067 -0.2501 2.4545 6 8 2.7296 -1.6965 1.1190 7 6 2.0323 -0.7104 -1.2305 8 8 2.7296 -1.6964 -1.1193 9 7 1.7066 -0.2498 -2.4546 10 6 2.1954 -0.9401 -3.6509 11 6 1.6848 -0.2192 -4.9000 12 1 2.0249 0.8159 -4.8669 13 6 2.2675 -0.8638 -6.0847 14 7 1.7009 -0.1601 -7.2836 15 6 2.4988 0.6220 -8.0753 16 1 3.2512 1.2537 -7.6269 17 6 2.3406 0.6029 -9.4542 18 7 2.7366 1.6294 -10.1764 19 14 1.5654 -0.8799 -10.2850 20 1 0.1156 -0.6311 -10.4892 21 1 2.2183 -1.1088 -11.5988 22 1 1.7459 -2.0785 -9.4270 23 6 0.3078 -0.3223 -7.5836 24 6 -0.6601 0.6976 -6.9238 25 6 -0.2022 0.9513 -5.4628 26 8 0.2612 -0.2308 -4.8816 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5137 0.8900 30 1 1.6766 1.9562 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8898 33 1 1.1494 0.5387 2.5435 34 1 2.0304 -0.7072 3.2465 35 1 1.1487 0.5386 -2.5436 36 1 3.2855 -0.9397 -3.6507 37 1 1.8325 -1.9679 -3.6510 38 1 3.3524 -0.7599 -6.0698 39 1 1.9933 -1.9185 -6.1077 40 1 2.6257 1.6163 -11.1400 41 1 0.0085 -1.3235 -7.2737 42 1 0.1867 -0.2543 -8.6648 43 1 -1.6723 0.2932 -6.9241 44 1 -0.6389 1.6342 -7.4809 45 1 -1.0436 1.3311 -4.8832 46 1 0.5983 1.6911 -5.4603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149869483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:19 Heat of formation + Delta-G solvation = -117.376512 kcal Electronic energy + Delta-G solvation = -27609.169904 eV Core-core repulsion = 23726.767145 eV Total energy + Delta-G solvation = -3882.402759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.82799 -40.85028 -39.46387 -37.04612 -36.30781 -35.78514 -34.12060 -33.82975 -33.27775 -30.45482 -28.34097 -27.49447 -27.14646 -25.32047 -24.28771 -22.58895 -22.49240 -21.81364 -20.47036 -19.00339 -18.79352 -17.76205 -17.61008 -17.44539 -17.07908 -16.80284 -16.38184 -16.03069 -15.86676 -15.69307 -15.45861 -15.01040 -14.95588 -14.59302 -14.32135 -14.14647 -13.96040 -13.72154 -13.47850 -13.28323 -13.25558 -13.13058 -13.05213 -12.77725 -12.64006 -12.33700 -12.26054 -12.01339 -11.74618 -11.62371 -11.30809 -11.07296 -10.62653 -10.60041 -10.47502 -10.33692 -10.06301 -8.75663 -8.24497 -5.64468 1.28404 1.39018 1.50030 1.58384 1.74168 1.98459 2.39302 2.63007 2.93271 3.02552 3.20181 3.53781 3.73538 3.93110 3.95844 4.02041 4.10895 4.22890 4.29519 4.40209 4.55372 4.58034 4.67736 4.68722 4.69961 4.73449 4.77478 4.78884 4.84467 4.98632 5.09850 5.11866 5.17858 5.19771 5.22322 5.28826 5.43038 5.92438 5.94711 6.13239 6.31920 6.47546 6.58229 6.95731 7.27533 7.44874 7.57709 8.05887 8.94532 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.029225 B = 0.003048 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.843617 B = 9184.868600 C = 9438.197467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C -0.138 4.138 4 C 0.519 3.481 5 N -0.830 5.830 6 O -0.565 6.565 7 C 0.510 3.490 8 O -0.558 6.558 9 N -0.705 5.705 10 C 0.127 3.873 11 C 0.078 3.922 12 H 0.071 0.929 13 C 0.109 3.891 14 N -0.611 5.611 15 C -0.257 4.257 16 H 0.048 0.952 17 C -0.008 4.008 18 N -0.940 5.940 19 Si 0.936 3.064 20 H -0.277 1.277 21 H -0.307 1.307 22 H -0.267 1.267 23 C 0.142 3.858 24 C -0.166 4.166 25 C 0.068 3.932 26 O -0.354 6.354 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.418 0.582 34 H 0.409 0.591 35 H 0.413 0.587 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.040 0.960 42 H 0.018 0.982 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.102 0.898 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.967 3.457 24.562 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.195 4.195 4 C 0.302 3.698 5 N -0.396 5.396 6 O -0.442 6.442 7 C 0.295 3.705 8 O -0.434 6.434 9 N -0.359 5.359 10 C 0.002 3.998 11 C 0.018 3.982 12 H 0.089 0.911 13 C -0.015 4.015 14 N -0.334 5.334 15 C -0.387 4.387 16 H 0.066 0.934 17 C -0.206 4.206 18 N -0.583 5.583 19 Si 0.765 3.235 20 H -0.204 1.204 21 H -0.236 1.236 22 H -0.192 1.192 23 C 0.016 3.984 24 C -0.207 4.207 25 C -0.009 4.009 26 O -0.272 6.272 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.251 0.749 34 H 0.240 0.760 35 H 0.250 0.750 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.120 0.880 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.110 2.030 24.289 26.020 hybrid contribution -0.106 -0.133 -1.102 1.115 sum -9.215 1.897 23.187 25.023 Atomic orbital electron populations 1.21938 0.87756 1.03326 1.06378 1.20918 1.00691 0.98455 0.90332 1.21951 1.01417 0.89755 1.06423 1.20335 0.79572 0.83766 0.86166 1.43581 1.55501 1.34073 1.06471 1.90884 1.38582 1.27757 1.86952 1.20651 0.80197 0.84348 0.85262 1.90831 1.38434 1.27451 1.86712 1.45686 1.53571 1.32325 1.04304 1.21412 0.98878 0.96528 0.82963 1.21658 0.82483 1.00407 0.93619 0.91089 1.21197 0.98538 0.95523 0.86195 1.44197 1.03600 1.55284 1.30310 1.18604 1.16350 1.16299 0.87451 0.93448 1.26036 0.98876 0.98486 0.97188 1.69975 1.51716 1.30022 1.06566 0.85958 0.77585 0.82909 0.77033 1.20445 1.23550 1.19172 1.20736 0.84126 0.97021 0.96545 1.23448 0.99422 1.00143 0.97666 1.22485 0.99652 0.86277 0.92503 1.87619 1.18834 1.41363 1.79390 0.93274 0.88970 0.87241 0.87219 0.93151 0.88977 0.74925 0.75962 0.74975 0.90709 0.92046 0.90202 0.93313 0.92700 0.94145 0.96409 0.90151 0.92939 0.87981 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.27 71.98 0.60 -0.71 16 2 C -0.10 -1.61 0.72 -53.67 -0.04 -1.64 16 3 C -0.14 -1.30 8.27 71.98 0.59 -0.70 16 4 C 0.52 11.04 6.75 87.66 0.59 11.64 16 5 N -0.83 -7.78 8.66 -173.54 -1.50 -9.29 16 6 O -0.57 -19.93 15.02 20.42 0.31 -19.63 16 7 C 0.51 13.75 6.47 87.66 0.57 14.32 16 8 O -0.56 -21.80 14.18 20.41 0.29 -21.51 16 9 N -0.71 -16.15 5.22 -463.04 -2.42 -18.56 16 10 C 0.13 3.53 5.24 86.38 0.45 3.99 16 11 C 0.08 2.33 2.10 28.71 0.06 2.39 16 12 H 0.07 2.13 6.77 -2.38 -0.02 2.12 16 13 C 0.11 4.05 5.58 83.79 0.47 4.52 16 14 N -0.61 -27.53 2.16 -706.02 -1.52 -29.06 16 15 C -0.26 -13.97 9.93 84.03 0.83 -13.14 16 16 H 0.05 2.81 8.06 -2.91 -0.02 2.78 16 17 C -0.01 -0.46 5.27 84.86 0.45 -0.02 16 18 N -0.94 -57.09 13.97 21.65 0.30 -56.79 16 19 Si 0.94 46.24 25.24 68.60 1.73 47.97 16 20 H -0.28 -13.18 6.74 99.48 0.67 -12.51 16 21 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 22 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 23 C 0.14 5.96 4.30 87.75 0.38 6.33 16 24 C -0.17 -5.57 6.75 32.14 0.22 -5.35 16 25 C 0.07 1.88 6.38 72.73 0.46 2.34 16 26 O -0.35 -10.26 9.54 -137.20 -1.31 -11.57 16 27 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.09 0.64 7.56 -2.39 -0.02 0.62 16 29 H 0.11 0.21 7.56 -2.39 -0.02 0.20 16 30 H 0.11 0.21 7.56 -2.39 -0.02 0.19 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.61 7.56 -2.39 -0.02 0.59 16 33 H 0.42 0.39 7.67 -92.71 -0.71 -0.32 16 34 H 0.41 3.38 8.93 -92.71 -0.83 2.55 16 35 H 0.41 6.94 7.16 -92.71 -0.66 6.27 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.95 8.00 -2.39 -0.02 2.93 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.04 1.61 7.99 -2.39 -0.02 1.59 16 42 H 0.02 0.83 3.44 -2.38 -0.01 0.83 16 43 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 1.48 6.66 -2.39 -0.02 1.46 16 Total: -1.00 -84.58 359.31 0.29 -84.29 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -1.22 Total: 10.18 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 5.63 Total: 23.96 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -5.14 Total: -113.70 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.71 Total: -52.70 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.73 Total: 47.97 kcal Total: -84.58 0.29 -84.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149869483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.085 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds