Wall clock time and date at job start Tue Mar 31 2020 04:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47548 * 2 1 4 4 C 1.50705 * 109.47084 * 239.99913 * 2 1 3 5 5 N 1.34774 * 119.99790 * 60.00296 * 4 2 1 6 6 O 1.21283 * 119.99437 * 240.00180 * 4 2 1 7 7 C 1.50701 * 109.47170 * 119.99853 * 2 1 3 8 8 O 1.21282 * 119.99856 * 119.99344 * 7 2 1 9 9 N 1.34771 * 120.00245 * 300.00306 * 7 2 1 10 10 C 1.46495 * 120.00679 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47605 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46392 * 305.00239 * 11 10 9 13 13 C 1.54808 * 109.46996 * 185.01184 * 11 10 9 14 14 N 1.45120 * 109.53458 * 172.11835 * 13 11 10 15 15 C 1.36934 * 118.76011 * 269.26039 * 14 13 11 16 16 H 1.08000 * 119.99812 * 26.09396 * 15 14 13 17 17 C 1.38817 * 120.00332 * 206.09413 * 15 14 13 18 18 N 1.31621 * 119.99526 * 15.49039 * 17 15 14 19 19 Si 1.86797 * 120.00262 * 195.49041 * 17 15 14 20 20 H 1.48501 * 109.46945 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47345 * 120.00257 * 19 17 15 22 22 H 1.48500 * 109.47041 * 240.00292 * 19 17 15 23 23 C 1.47511 * 122.48451 * 89.28454 * 14 13 11 24 24 C 1.53571 * 111.03178 * 318.36707 * 23 14 13 25 25 C 1.51537 * 109.57463 * 320.02032 * 24 23 14 26 26 O 1.38015 * 109.47170 * 65.00121 * 11 10 9 27 27 H 1.08993 * 109.46915 * 300.00456 * 1 2 3 28 28 H 1.09004 * 109.46802 * 59.99716 * 1 2 3 29 29 H 1.08993 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47145 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46772 * 300.00314 * 3 2 1 32 32 H 1.08996 * 109.46657 * 59.99861 * 3 2 1 33 33 H 0.96998 * 120.00302 * 0.02562 * 5 4 2 34 34 H 0.97007 * 119.99468 * 179.97438 * 5 4 2 35 35 H 0.97011 * 119.99960 * 359.97438 * 9 7 2 36 36 H 1.09007 * 109.46659 * 59.99451 * 10 9 7 37 37 H 1.09000 * 109.46962 * 300.00141 * 10 9 7 38 38 H 1.09000 * 109.45682 * 292.13934 * 13 11 10 39 39 H 1.08996 * 109.46351 * 52.11363 * 13 11 10 40 40 H 0.97002 * 119.99540 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.16664 * 78.76172 * 23 14 13 42 42 H 1.09001 * 109.16634 * 197.96545 * 23 14 13 43 43 H 1.09000 * 109.45295 * 80.04774 * 24 23 14 44 44 H 1.08997 * 109.45428 * 199.98628 * 24 23 14 45 45 H 1.08994 * 109.59239 * 331.62082 * 25 24 23 46 46 H 1.08999 * 109.58957 * 211.17942 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7068 -0.2499 -2.4546 6 8 2.7296 -1.6966 -1.1191 7 6 2.0323 -0.7104 1.2305 8 8 2.7295 -1.6965 1.1192 9 7 1.7067 -0.2500 2.4546 10 6 2.1946 -0.9408 3.6508 11 6 1.6851 -0.2191 4.9000 12 1 1.9743 0.8309 4.8561 13 6 2.3023 -0.8720 6.1607 14 7 1.9712 -0.0782 7.3296 15 6 2.8288 0.9178 7.7141 16 1 3.4713 1.3885 6.9847 17 6 2.8722 1.3224 9.0412 18 7 2.3340 0.5692 9.9768 19 14 3.6945 2.9359 9.4993 20 1 4.2182 3.5902 8.2733 21 1 2.7037 3.8285 10.1526 22 1 4.8159 2.6715 10.4361 23 6 0.7462 -0.3040 8.1196 24 6 -0.4583 -0.5702 7.2048 25 6 -0.3938 0.3473 6.0006 26 8 0.3096 -0.3156 4.9582 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.1494 0.5389 -2.5436 34 1 2.0304 -0.7071 -3.2466 35 1 1.1493 0.5390 2.5436 36 1 3.2846 -0.9412 3.6509 37 1 1.8309 -1.9683 3.6506 38 1 1.9028 -1.8791 6.2806 39 1 3.3855 -0.9217 6.0507 40 1 2.3640 0.8521 10.9041 41 1 0.8954 -1.1631 8.7737 42 1 0.5453 0.5776 8.7283 43 1 -0.4389 -1.6080 6.8719 44 1 -1.3804 -0.3830 7.7550 45 1 0.1292 1.2653 6.2682 46 1 -1.4041 0.5838 5.6668 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149869484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:21 Heat of formation + Delta-G solvation = -125.582673 kcal Electronic energy + Delta-G solvation = -27484.772746 eV Core-core repulsion = 23602.014141 eV Total energy + Delta-G solvation = -3882.758605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79176 -40.54963 -39.45067 -36.98724 -36.29308 -35.69968 -34.09005 -33.52434 -33.26336 -30.07450 -28.33643 -27.33181 -27.04286 -25.35176 -24.47502 -22.57934 -22.29151 -21.35580 -20.45188 -18.97473 -18.80927 -17.77023 -17.56314 -17.31725 -16.93371 -16.70968 -16.36085 -16.31004 -15.72488 -15.52092 -15.44590 -14.99889 -14.78408 -14.57407 -14.31828 -13.86672 -13.69462 -13.35925 -13.26622 -13.24846 -13.12958 -13.06858 -12.97813 -12.79791 -12.47910 -12.37826 -12.25775 -12.04466 -11.76739 -11.46981 -11.30237 -11.06178 -10.59595 -10.54327 -10.41298 -10.24914 -10.05376 -8.72964 -7.89487 -5.37027 1.45212 1.47752 1.57566 1.58952 1.74708 1.98991 2.49275 2.63706 2.77095 3.25762 3.50301 3.59387 3.74248 3.93709 4.03634 4.12493 4.15087 4.23351 4.36493 4.53608 4.57961 4.66785 4.68265 4.71677 4.75285 4.78049 4.81164 4.86770 4.91619 5.14691 5.18967 5.20040 5.22903 5.26234 5.44437 5.47391 5.61515 5.75594 5.95223 6.35404 6.48231 6.59809 6.75945 7.14030 7.28363 7.45458 7.85949 8.27427 9.16441 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.003100 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.485663 B = 9030.743898 C = 9458.563496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.138 4.138 4 C 0.519 3.481 5 N -0.830 5.830 6 O -0.565 6.565 7 C 0.510 3.490 8 O -0.558 6.558 9 N -0.706 5.706 10 C 0.143 3.857 11 C 0.091 3.909 12 H 0.050 0.950 13 C 0.122 3.878 14 N -0.605 5.605 15 C -0.268 4.268 16 H 0.069 0.931 17 C -0.047 4.047 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.296 1.296 23 C 0.185 3.815 24 C -0.165 4.165 25 C 0.092 3.908 26 O -0.391 6.391 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.418 0.582 34 H 0.409 0.591 35 H 0.414 0.586 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.040 0.960 39 H 0.048 0.952 40 H 0.249 0.751 41 H -0.009 1.009 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.536 6.444 -22.602 25.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.195 4.195 4 C 0.302 3.698 5 N -0.396 5.396 6 O -0.442 6.442 7 C 0.295 3.705 8 O -0.435 6.435 9 N -0.359 5.359 10 C 0.018 3.982 11 C 0.029 3.971 12 H 0.068 0.932 13 C -0.006 4.006 14 N -0.328 5.328 15 C -0.398 4.398 16 H 0.087 0.913 17 C -0.242 4.242 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.224 1.224 23 C 0.060 3.940 24 C -0.204 4.204 25 C 0.016 3.984 26 O -0.310 6.310 27 H 0.109 0.891 28 H 0.128 0.872 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.129 0.871 32 H 0.109 0.891 33 H 0.251 0.749 34 H 0.241 0.759 35 H 0.251 0.749 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.009 0.991 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.706 5.031 -22.358 24.515 hybrid contribution 0.655 0.831 1.066 1.502 sum -8.051 5.861 -21.293 23.506 Atomic orbital electron populations 1.21934 0.87728 1.03348 1.06361 1.20916 1.00723 0.98431 0.90292 1.21951 1.01395 0.89785 1.06400 1.20323 0.79569 0.83758 0.86154 1.43572 1.55513 1.34068 1.06435 1.90885 1.38566 1.27751 1.86949 1.20677 0.80210 0.84372 0.85253 1.90826 1.38487 1.27488 1.86724 1.45745 1.53562 1.32290 1.04311 1.21132 0.98464 0.96236 0.82364 1.22215 0.82403 0.98562 0.93877 0.93231 1.21570 0.98166 0.93593 0.87308 1.44048 1.21454 1.37733 1.29519 1.19556 1.17497 1.10802 0.91967 0.91350 1.25790 1.00868 1.01843 0.95727 1.70247 1.50469 1.37583 0.99855 0.85234 0.77466 0.79955 0.77949 1.18906 1.21429 1.22356 1.20782 0.84013 0.98106 0.91098 1.22630 0.99092 1.00474 0.98198 1.22091 0.96072 0.94023 0.86223 1.86103 1.18674 1.74999 1.51181 0.89053 0.87172 0.93228 0.93177 0.87133 0.89079 0.74918 0.75943 0.74909 0.90894 0.92131 0.94172 0.93337 0.94130 0.99130 0.93391 0.92347 0.89632 0.93942 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.27 71.98 0.60 -0.86 16 2 C -0.10 -1.72 0.72 -53.67 -0.04 -1.76 16 3 C -0.14 -1.47 8.27 71.98 0.60 -0.87 16 4 C 0.52 11.53 6.75 87.66 0.59 12.13 16 5 N -0.83 -8.36 8.66 -173.53 -1.50 -9.86 16 6 O -0.56 -20.45 15.02 20.40 0.31 -20.15 16 7 C 0.51 14.61 6.47 87.66 0.57 15.17 16 8 O -0.56 -22.73 14.18 20.41 0.29 -22.44 16 9 N -0.71 -17.83 5.28 -463.08 -2.44 -20.27 16 10 C 0.14 4.40 5.34 86.38 0.46 4.86 16 11 C 0.09 3.05 2.68 31.21 0.08 3.13 16 12 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 13 C 0.12 5.03 5.12 87.26 0.45 5.48 16 14 N -0.61 -29.42 2.23 -698.15 -1.55 -30.97 16 15 C -0.27 -14.21 9.46 84.04 0.80 -13.41 16 16 H 0.07 3.53 7.88 -2.91 -0.02 3.51 16 17 C -0.05 -2.55 4.89 84.86 0.41 -2.13 16 18 N -0.94 -54.40 10.99 21.65 0.24 -54.16 16 19 Si 0.97 43.69 29.58 68.60 2.03 45.72 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 23 C 0.18 8.74 4.70 86.38 0.41 9.15 16 24 C -0.17 -5.85 5.79 30.31 0.18 -5.67 16 25 C 0.09 2.87 6.38 71.50 0.46 3.33 16 26 O -0.39 -12.47 9.38 -117.87 -1.11 -13.57 16 27 H 0.09 0.76 7.56 -2.39 -0.02 0.75 16 28 H 0.11 0.31 7.57 -2.38 -0.02 0.29 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 0.32 7.56 -2.39 -0.02 0.30 16 32 H 0.09 0.74 7.56 -2.39 -0.02 0.73 16 33 H 0.42 0.66 7.67 -92.71 -0.71 -0.05 16 34 H 0.41 3.62 8.93 -92.70 -0.83 2.80 16 35 H 0.41 8.00 7.29 -92.70 -0.68 7.32 16 36 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.04 1.67 8.11 -2.39 -0.02 1.65 16 39 H 0.05 2.05 7.98 -2.39 -0.02 2.03 16 40 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 41 H -0.01 -0.51 8.04 -2.39 -0.02 -0.52 16 42 H 0.05 2.51 6.37 -2.39 -0.02 2.50 16 43 H 0.06 2.08 8.01 -2.39 -0.02 2.06 16 44 H 0.09 2.61 8.14 -2.39 -0.02 2.60 16 45 H 0.04 1.52 7.40 -2.39 -0.02 1.50 16 46 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -82.59 364.69 0.60 -81.99 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -1.21 Total: 15.17 kcal Atomic # 6 Polarization: 22.99 SS G_CDS: 5.55 Total: 28.54 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -5.26 Total: -115.26 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -0.51 Total: -56.16 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -82.59 0.60 -81.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149869484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.591 kcal (2) G-P(sol) polarization free energy of solvation -82.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds