Wall clock time and date at job start Tue Mar 31 2020 04:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46498 * 2 1 4 4 C 1.42906 * 113.99448 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.56289 * 355.68790 * 4 3 2 6 6 C 1.53001 * 117.49412 * 141.37652 * 4 3 2 7 7 C 1.53001 * 117.49506 * 209.99623 * 4 3 2 8 8 H 1.09001 * 117.51533 * 145.03175 * 7 4 3 9 9 C 1.50695 * 117.50145 * 0.02562 * 7 4 3 10 10 O 1.21285 * 120.00087 * 359.97438 * 9 7 4 11 11 N 1.34777 * 120.00450 * 179.97438 * 9 7 4 12 12 C 1.46499 * 120.00580 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47185 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46891 * 180.02562 * 13 12 11 15 15 N 1.46906 * 109.47053 * 179.97438 * 14 13 12 16 16 C 1.46895 * 110.99789 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47030 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99926 * 0.02562 * 17 16 15 19 19 N 1.34767 * 120.00169 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00058 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00073 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00049 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99604 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99778 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47161 * 60.00224 * 24 22 20 26 26 H 1.48506 * 109.46664 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47253 * 299.99863 * 24 22 20 28 28 H 1.08995 * 109.47314 * 60.00255 * 1 2 3 29 29 H 1.09005 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47380 * 300.00085 * 1 2 3 31 31 H 1.08997 * 109.47380 * 239.99915 * 2 1 3 32 32 H 1.09002 * 109.46971 * 119.99594 * 2 1 3 33 33 H 1.08991 * 117.50137 * 0.02562 * 6 4 3 34 34 H 1.09006 * 117.49547 * 214.97123 * 6 4 3 35 35 H 0.97002 * 119.99403 * 0.02562 * 11 9 7 36 36 H 1.09001 * 109.46813 * 59.99993 * 12 11 9 37 37 H 1.08996 * 109.46733 * 300.00119 * 12 11 9 38 38 H 1.09001 * 109.47372 * 60.00187 * 13 12 11 39 39 H 1.09004 * 109.47108 * 299.99931 * 13 12 11 40 40 H 1.08992 * 109.47056 * 59.99654 * 14 13 12 41 41 H 1.09004 * 109.47006 * 299.99770 * 14 13 12 42 42 H 1.00899 * 110.99484 * 303.95475 * 15 14 13 43 43 H 1.08996 * 109.47424 * 299.99656 * 16 15 14 44 44 H 1.09002 * 109.47411 * 60.00282 * 16 15 14 45 45 H 0.97000 * 120.00220 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99698 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9771 0.5200 0.0749 6 6 4.0516 2.5729 -0.8465 7 6 4.0419 2.6878 0.6792 8 1 4.9903 2.5555 1.1999 9 6 3.0955 3.6850 1.2963 10 8 1.8983 3.4983 1.2429 11 7 3.5794 4.7845 1.9075 12 6 2.6593 5.7542 2.5069 13 6 3.4602 6.8995 3.1296 14 6 2.4993 7.9120 3.7562 15 7 3.2682 9.0114 4.3546 16 6 2.3764 10.0053 4.9667 17 6 3.1991 11.1149 5.5693 18 8 4.4093 11.0812 5.4957 19 7 2.5902 12.1450 6.1891 20 6 3.3387 13.1547 6.7369 21 1 4.4163 13.1247 6.6713 22 6 2.7108 14.2166 7.3764 23 7 1.3997 14.2528 7.4566 24 14 3.7307 15.5919 8.1233 25 1 4.5403 16.2409 7.0609 26 1 2.8292 16.5964 8.7427 27 1 4.6334 15.0314 9.1607 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.3735 3.2190 -1.4038 34 1 5.0064 2.3646 -1.3294 35 1 4.5369 4.9340 1.9498 36 1 2.0663 5.2634 3.2786 37 1 1.9973 6.1507 1.7371 38 1 4.0529 7.3903 2.3576 39 1 4.1225 6.5033 3.8993 40 1 1.9069 7.4210 4.5282 41 1 1.8366 8.3083 2.9868 42 1 3.9358 8.6622 5.0257 43 1 1.7135 10.4164 4.2054 44 1 1.7825 9.5291 5.7468 45 1 1.6223 12.1722 6.2477 46 1 0.9614 14.9939 7.9034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155096739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:24 Heat of formation + Delta-G solvation = -95.395737 kcal Electronic energy + Delta-G solvation = -24459.948443 eV Core-core repulsion = 20578.498842 eV Total energy + Delta-G solvation = -3881.449601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.25068 -38.43177 -38.24297 -36.51777 -35.45585 -34.73491 -33.82282 -31.50043 -31.15428 -30.96214 -27.35287 -25.40188 -24.06021 -23.20926 -22.79963 -22.45970 -21.67093 -20.21228 -19.20180 -18.10528 -17.85022 -16.58177 -16.18391 -16.16526 -15.94859 -15.84703 -15.38589 -15.03318 -14.58794 -14.44317 -14.27687 -13.98807 -13.51471 -13.40846 -13.28217 -12.95692 -12.82151 -12.71211 -12.49861 -12.04417 -11.83461 -11.75501 -11.54411 -11.46335 -11.40156 -11.32844 -11.05611 -10.93721 -10.86164 -10.43463 -10.20466 -9.95636 -9.49128 -9.46166 -9.21177 -8.45921 -8.05774 -7.94993 -6.40635 -3.81591 2.32192 2.88550 3.12322 3.20966 3.26561 3.31007 3.46381 3.92011 4.10038 4.28154 4.33254 4.36553 4.51460 4.70000 4.72933 4.84744 4.88923 4.96634 5.00475 5.02584 5.09144 5.19723 5.25031 5.27708 5.39585 5.46759 5.53250 5.55232 5.58735 5.67412 5.81303 5.83890 5.99234 6.02378 6.07300 6.27778 6.28333 6.91247 7.21138 7.33424 7.55892 7.66283 8.07123 8.12389 8.62356 9.18667 9.55364 10.06881 10.77028 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.042682 B = 0.001495 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.857165 B =18720.762589 C =19242.677903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.325 6.325 4 C 0.051 3.949 5 H 0.117 0.883 6 C -0.160 4.160 7 C -0.198 4.198 8 H 0.128 0.872 9 C 0.537 3.463 10 O -0.514 6.514 11 N -0.730 5.730 12 C 0.122 3.878 13 C -0.128 4.128 14 C 0.062 3.938 15 N -0.670 5.670 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.029 0.971 41 H 0.074 0.926 42 H 0.349 0.651 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.392 0.608 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -27.998 -14.614 31.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.242 6.242 4 C -0.009 4.009 5 H 0.135 0.865 6 C -0.198 4.198 7 C -0.219 4.219 8 H 0.146 0.854 9 C 0.322 3.678 10 O -0.388 6.388 11 N -0.383 5.383 12 C -0.002 4.002 13 C -0.167 4.167 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.431 4.431 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.168 0.832 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.226 0.774 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.325 -27.487 -15.183 31.429 hybrid contribution 0.238 0.258 1.357 1.402 sum 1.563 -27.229 -13.825 30.578 Atomic orbital electron populations 1.21709 0.93491 1.01992 1.03542 1.22556 0.95987 0.83857 0.99740 1.88179 1.16933 1.25561 1.93543 1.22538 0.83744 0.92930 1.01667 0.86507 1.23431 1.03097 1.02472 0.90801 1.22779 1.01414 1.00365 0.97387 0.85439 1.19498 0.88650 0.81308 0.78297 1.90774 1.15454 1.75359 1.57246 1.45981 1.10590 1.23071 1.58667 1.21290 0.92332 0.88928 0.97616 1.21737 0.98785 0.95017 1.01115 1.21831 0.95290 0.91221 0.98435 1.60046 1.17157 1.13690 1.39316 1.21670 0.94931 0.93633 0.97974 1.19814 0.88697 0.84776 0.84131 1.90516 1.14167 1.79262 1.62925 1.41857 1.09462 1.19379 1.49289 1.19666 0.92932 0.98815 1.31650 0.87969 1.25265 0.95898 0.98986 0.97751 1.69606 1.07821 1.33004 1.43862 0.85909 0.79022 0.79988 0.79238 1.19876 1.20975 1.19935 0.91847 0.91205 0.91553 0.93466 0.93416 0.87553 0.87049 0.76593 0.91591 0.91371 0.90151 0.91320 0.95267 0.90781 0.83211 0.89539 0.93830 0.77431 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.41 6.53 37.16 0.24 0.65 16 3 O -0.32 -3.46 8.48 -57.36 -0.49 -3.95 16 4 C 0.05 0.38 6.40 -26.73 -0.17 0.21 16 5 H 0.12 0.53 7.93 -51.93 -0.41 0.12 16 6 C -0.16 -1.03 10.18 -26.73 -0.27 -1.30 16 7 C -0.20 -1.47 6.19 -91.77 -0.57 -2.04 16 8 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 9 C 0.54 5.89 7.61 -10.99 -0.08 5.81 16 10 O -0.51 -7.84 14.92 -16.58 -0.25 -8.08 16 11 N -0.73 -6.55 5.56 -60.30 -0.33 -6.89 16 12 C 0.12 1.22 5.67 -4.04 -0.02 1.19 16 13 C -0.13 -1.26 5.59 -26.73 -0.15 -1.41 16 14 C 0.06 0.75 5.69 -3.82 -0.02 0.73 16 15 N -0.67 -10.80 6.13 -115.06 -0.70 -11.50 16 16 C 0.05 0.91 6.17 -4.98 -0.03 0.87 16 17 C 0.44 10.53 7.82 -10.99 -0.09 10.44 16 18 O -0.58 -16.01 15.78 5.54 0.09 -15.92 16 19 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 20 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.68 13.05 55.50 0.72 -23.95 16 24 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 2.54 8.47 -40.82 -0.35 2.20 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.35 5.73 8.43 -39.29 -0.33 5.39 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.39 9.61 7.90 -40.82 -0.32 9.28 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 391.85 15.07 5.91 5.91 Total: -1.00 -35.33 391.85 -8.85 -44.17 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -7.69 Total: 12.23 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -1.02 Total: 6.37 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.37 Total: -56.84 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.65 Total: -27.96 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.33 -8.85 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155096739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.223 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds