Wall clock time and date at job start Tue Mar 31 2020 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42902 * 109.46498 * 2 1 4 4 C 1.42906 * 113.99448 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.56289 * 355.68790 * 4 3 2 6 6 C 1.53001 * 117.49412 * 141.37652 * 4 3 2 7 7 C 1.53001 * 117.49506 * 209.99623 * 4 3 2 8 8 H 1.09001 * 117.51533 * 145.03175 * 7 4 3 9 9 C 1.50695 * 117.50145 * 0.02562 * 7 4 3 10 10 O 1.21285 * 120.00087 * 359.97438 * 9 7 4 11 11 N 1.34777 * 120.00450 * 179.97438 * 9 7 4 12 12 C 1.46499 * 120.00580 * 179.97438 * 11 9 7 13 13 C 1.52996 * 109.47185 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46891 * 180.02562 * 13 12 11 15 15 N 1.46906 * 109.47053 * 179.97438 * 14 13 12 16 16 C 1.46895 * 110.99789 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47030 * 179.97438 * 16 15 14 18 18 O 1.21294 * 119.99926 * 0.02562 * 17 16 15 19 19 N 1.34767 * 120.00169 * 179.97438 * 17 16 15 20 20 C 1.37102 * 120.00058 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00073 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00049 * 180.02562 * 20 19 17 23 23 N 1.31410 * 119.99604 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99778 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47161 * 60.00224 * 24 22 20 26 26 H 1.48506 * 109.46664 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47253 * 299.99863 * 24 22 20 28 28 H 1.08995 * 109.47314 * 60.00255 * 1 2 3 29 29 H 1.09005 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47380 * 300.00085 * 1 2 3 31 31 H 1.08997 * 109.47380 * 239.99915 * 2 1 3 32 32 H 1.09002 * 109.46971 * 119.99594 * 2 1 3 33 33 H 1.08991 * 117.50137 * 0.02562 * 6 4 3 34 34 H 1.09006 * 117.49547 * 214.97123 * 6 4 3 35 35 H 0.97002 * 119.99403 * 0.02562 * 11 9 7 36 36 H 1.09001 * 109.46813 * 59.99993 * 12 11 9 37 37 H 1.08996 * 109.46733 * 300.00119 * 12 11 9 38 38 H 1.09001 * 109.47372 * 60.00187 * 13 12 11 39 39 H 1.09004 * 109.47108 * 299.99931 * 13 12 11 40 40 H 1.08992 * 109.47056 * 59.99654 * 14 13 12 41 41 H 1.09004 * 109.47006 * 299.99770 * 14 13 12 42 42 H 1.00899 * 110.99484 * 303.95475 * 15 14 13 43 43 H 1.08996 * 109.47424 * 299.99656 * 16 15 14 44 44 H 1.09002 * 109.47411 * 60.00282 * 16 15 14 45 45 H 0.97000 * 120.00220 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99698 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9771 0.5200 0.0749 6 6 4.0516 2.5729 -0.8465 7 6 4.0419 2.6878 0.6792 8 1 4.9903 2.5555 1.1999 9 6 3.0955 3.6850 1.2963 10 8 1.8983 3.4983 1.2429 11 7 3.5794 4.7845 1.9075 12 6 2.6593 5.7542 2.5069 13 6 3.4602 6.8995 3.1296 14 6 2.4993 7.9120 3.7562 15 7 3.2682 9.0114 4.3546 16 6 2.3764 10.0053 4.9667 17 6 3.1991 11.1149 5.5693 18 8 4.4093 11.0812 5.4957 19 7 2.5902 12.1450 6.1891 20 6 3.3387 13.1547 6.7369 21 1 4.4163 13.1247 6.6713 22 6 2.7108 14.2166 7.3764 23 7 1.3997 14.2528 7.4566 24 14 3.7307 15.5919 8.1233 25 1 4.5403 16.2409 7.0609 26 1 2.8292 16.5964 8.7427 27 1 4.6334 15.0314 9.1607 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.3735 3.2190 -1.4038 34 1 5.0064 2.3646 -1.3294 35 1 4.5369 4.9340 1.9498 36 1 2.0663 5.2634 3.2786 37 1 1.9973 6.1507 1.7371 38 1 4.0529 7.3903 2.3576 39 1 4.1225 6.5033 3.8993 40 1 1.9069 7.4210 4.5282 41 1 1.8366 8.3083 2.9868 42 1 3.9358 8.6622 5.0257 43 1 1.7135 10.4164 4.2054 44 1 1.7825 9.5291 5.7468 45 1 1.6223 12.1722 6.2477 46 1 0.9614 14.9939 7.9034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155096739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:23 Heat of formation + Delta-G solvation = -122.568915 kcal Electronic energy + Delta-G solvation = -24461.126761 eV Core-core repulsion = 20578.498842 eV Total energy + Delta-G solvation = -3882.627919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99791 -40.16393 -39.03710 -37.61555 -36.18646 -35.96582 -35.57171 -33.29579 -32.38199 -31.61688 -28.72961 -26.81376 -25.39626 -23.79841 -23.71445 -23.01336 -22.57364 -21.15501 -20.87442 -19.90371 -18.74217 -17.86853 -17.27605 -17.10956 -16.87050 -16.61144 -16.41556 -16.32491 -15.99601 -15.79674 -15.38476 -15.11019 -15.03325 -14.60389 -14.28151 -13.93402 -13.58468 -13.53561 -13.36527 -13.27994 -13.17492 -13.01825 -12.85483 -12.70113 -12.43366 -12.42804 -12.11883 -12.10184 -11.86060 -11.85672 -11.50154 -11.41248 -10.80094 -10.35994 -10.06131 -10.02341 -10.02147 -9.34853 -8.46663 -5.95889 1.40357 1.42215 1.53397 1.56413 2.04528 2.14699 2.30174 2.61909 2.89588 2.95136 3.20516 3.51966 3.77233 3.84913 3.94496 4.00026 4.12282 4.15904 4.20018 4.23393 4.33464 4.41536 4.47834 4.50223 4.50742 4.55672 4.58096 4.69515 4.76631 4.84171 4.89782 5.02227 5.04113 5.15568 5.20818 5.26055 5.40476 5.49239 5.87516 6.08735 6.39636 6.40557 6.59489 6.63076 7.11854 7.35408 7.55472 8.10479 8.70455 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.042682 B = 0.001495 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.857165 B =18720.762589 C =19242.677903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.365 6.365 4 C 0.037 3.963 5 H 0.150 0.850 6 C -0.150 4.150 7 C -0.202 4.202 8 H 0.162 0.838 9 C 0.528 3.472 10 O -0.566 6.566 11 N -0.720 5.720 12 C 0.129 3.871 13 C -0.113 4.113 14 C 0.063 3.937 15 N -0.683 5.683 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.573 5.573 20 C -0.337 4.337 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.053 0.947 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.415 0.585 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.346 0.654 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.396 0.604 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -29.065 -14.897 32.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.283 6.283 4 C -0.022 4.022 5 H 0.167 0.833 6 C -0.187 4.187 7 C -0.224 4.224 8 H 0.179 0.821 9 C 0.315 3.685 10 O -0.444 6.444 11 N -0.373 5.373 12 C 0.004 3.996 13 C -0.151 4.151 14 C -0.067 4.067 15 N -0.315 5.315 16 C -0.069 4.069 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.210 5.210 20 C -0.467 4.467 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.164 0.836 35 H 0.252 0.748 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.164 0.836 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.367 -28.561 -15.473 32.569 hybrid contribution -0.101 0.551 1.412 1.519 sum 2.266 -28.010 -14.061 31.423 Atomic orbital electron populations 1.21739 0.93946 1.03076 1.01965 1.22712 0.95777 0.83043 1.01065 1.88136 1.19015 1.27355 1.93812 1.22968 0.82805 0.94368 1.02033 0.83306 1.23492 1.03951 1.01344 0.89951 1.22891 1.01845 0.99476 0.98144 0.82051 1.20205 0.88623 0.81887 0.77756 1.90752 1.17795 1.76575 1.59273 1.45910 1.11290 1.22332 1.57753 1.21121 0.92371 0.89037 0.97042 1.21570 0.98215 0.94225 1.01113 1.21904 0.95561 0.90560 0.98629 1.60046 1.17548 1.14851 1.39083 1.21536 0.94306 0.92194 0.98816 1.20869 0.88772 0.85221 0.82709 1.90482 1.16246 1.80209 1.64038 1.41933 1.09515 1.19686 1.49852 1.19666 0.92397 1.00747 1.33880 0.90211 1.26062 0.97074 1.00647 0.97439 1.69670 1.08830 1.33740 1.43853 0.84969 0.77720 0.77153 0.78371 1.19699 1.19494 1.19612 0.92779 0.88778 0.93705 0.91485 0.92526 0.89934 0.83630 0.74844 0.92400 0.92564 0.90253 0.90317 0.94156 0.90460 0.83552 0.87895 0.91563 0.76973 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 10.28 71.98 0.74 -1.43 16 2 C 0.05 0.71 6.53 71.98 0.47 1.18 16 3 O -0.36 -7.77 8.48 -127.82 -1.08 -8.86 16 4 C 0.04 0.49 6.40 30.59 0.20 0.69 16 5 H 0.15 0.90 7.93 -2.39 -0.02 0.88 16 6 C -0.15 -1.65 10.18 30.60 0.31 -1.34 16 7 C -0.20 -2.62 6.19 -11.54 -0.07 -2.70 16 8 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 9 C 0.53 11.37 7.61 87.66 0.67 12.04 16 10 O -0.57 -17.82 14.92 18.11 0.27 -17.55 16 11 N -0.72 -12.17 5.56 -463.07 -2.57 -14.74 16 12 C 0.13 2.48 5.67 86.38 0.49 2.97 16 13 C -0.11 -2.05 5.59 30.59 0.17 -1.88 16 14 C 0.06 1.41 5.69 86.30 0.49 1.90 16 15 N -0.68 -21.16 6.13 -517.93 -3.17 -24.33 16 16 C 0.06 2.21 6.17 85.56 0.53 2.73 16 17 C 0.44 20.97 7.82 87.66 0.69 21.66 16 18 O -0.62 -34.68 15.78 -3.07 -0.05 -34.72 16 19 N -0.57 -29.70 5.29 -306.98 -1.62 -31.32 16 20 C -0.34 -19.32 9.68 84.04 0.81 -18.50 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.95 13.05 21.67 0.28 -49.66 16 24 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.83 8.14 -2.38 -0.02 0.82 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.15 0.57 8.14 -2.38 -0.02 0.55 16 35 H 0.41 4.47 8.47 -92.71 -0.79 3.68 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 39 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 42 H 0.35 11.03 8.43 -89.69 -0.76 10.27 16 43 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 45 H 0.40 19.52 7.90 -92.71 -0.73 18.79 16 46 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -78.65 391.85 -1.23 -79.89 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -1.27 Total: 39.15 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 5.96 Total: 17.12 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -7.09 Total: -120.05 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -0.86 Total: -61.13 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -78.65 -1.23 -79.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155096739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.681 kcal (2) G-P(sol) polarization free energy of solvation -78.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds