Wall clock time and date at job start Tue Mar 31 2020 04:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.67727 * 2 1 4 4 O 1.44388 * 110.61780 * 237.03486 * 2 1 3 5 5 C 1.43741 * 106.97253 * 201.44100 * 4 2 1 6 6 C 1.54103 * 107.29737 * 26.51254 * 5 4 2 7 7 C 1.54814 * 104.18391 * 357.97123 * 6 5 4 8 8 H 1.09000 * 110.91186 * 97.35611 * 7 6 5 9 9 C 1.50703 * 110.90771 * 220.92081 * 7 6 5 10 10 O 1.21278 * 120.00506 * 118.54222 * 9 7 6 11 11 N 1.34780 * 119.99909 * 298.54954 * 9 7 6 12 12 C 1.46497 * 119.99968 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47217 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47290 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.47125 * 179.97438 * 14 13 12 16 16 C 1.46898 * 110.99614 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46984 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99863 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99509 * 359.71860 * 20 19 17 22 22 C 1.38950 * 120.00048 * 179.72298 * 20 19 17 23 23 N 1.31413 * 119.99930 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47151 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47086 * 119.99941 * 24 22 20 27 27 H 1.48500 * 109.46879 * 239.99997 * 24 22 20 28 28 H 1.08993 * 109.47540 * 297.03930 * 1 2 3 29 29 H 1.09004 * 109.46805 * 57.03883 * 1 2 3 30 30 H 1.09002 * 109.47290 * 177.03179 * 1 2 3 31 31 H 1.08996 * 109.88029 * 267.09049 * 5 4 2 32 32 H 1.09001 * 110.00476 * 146.00590 * 5 4 2 33 33 H 1.08994 * 110.49140 * 239.29501 * 6 5 4 34 34 H 1.09000 * 110.48973 * 116.64541 * 6 5 4 35 35 H 0.96999 * 120.00036 * 359.97438 * 11 9 7 36 36 H 1.09002 * 109.46983 * 59.99865 * 12 11 9 37 37 H 1.08996 * 109.47512 * 299.99722 * 12 11 9 38 38 H 1.08998 * 109.46615 * 60.00142 * 13 12 11 39 39 H 1.08996 * 109.46800 * 300.00339 * 13 12 11 40 40 H 1.09002 * 109.46945 * 60.00024 * 14 13 12 41 41 H 1.09000 * 109.47247 * 300.00386 * 14 13 12 42 42 H 1.00890 * 111.00276 * 303.95677 * 15 14 13 43 43 H 1.09004 * 109.47320 * 60.00702 * 16 15 14 44 44 H 1.09001 * 109.47291 * 299.99999 * 16 15 14 45 45 H 0.96996 * 119.99858 * 359.72084 * 19 17 16 46 46 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 8 2.0385 -0.7353 -1.1338 5 6 3.3839 -1.1255 -0.8118 6 6 3.4795 -1.2168 0.7235 7 6 2.0757 -0.7894 1.2171 8 1 1.4550 -1.6606 1.4265 9 6 2.1795 0.0979 2.4308 10 8 1.7552 1.2333 2.3901 11 7 2.7440 -0.3703 3.5616 12 6 2.8454 0.4924 4.7412 13 6 3.5201 -0.2766 5.8790 14 6 3.6266 0.6246 7.1108 15 7 4.2739 -0.1139 8.2034 16 6 4.3939 0.7222 9.4052 17 6 5.0616 -0.0672 10.5017 18 8 5.4033 -1.2137 10.3017 19 7 5.2780 0.5004 11.7047 20 6 5.8859 -0.2176 12.7021 21 1 6.1871 -1.2395 12.5250 22 6 6.1142 0.3695 13.9406 23 7 5.7480 1.6131 14.1558 24 14 6.9418 -0.6091 15.2997 25 1 7.2529 -1.9750 14.8071 26 1 8.1990 0.0703 15.7037 27 1 6.0307 -0.7006 16.4688 28 1 -0.3634 0.4671 0.9153 29 1 -0.3633 0.5592 -0.8623 30 1 -0.3634 -1.0263 -0.0532 31 1 4.0854 -0.3783 -1.1830 32 1 3.6071 -2.0958 -1.2554 33 1 4.2406 -0.5333 1.0998 34 1 3.6974 -2.2392 1.0321 35 1 3.0832 -1.2785 3.5943 36 1 1.8473 0.8002 5.0531 37 1 3.4378 1.3741 4.4968 38 1 4.5181 -0.5847 5.5674 39 1 2.9274 -1.1581 6.1233 40 1 2.6287 0.9332 7.4225 41 1 4.2195 1.5059 6.8662 42 1 3.7779 -0.9690 8.4054 43 1 3.4016 1.0322 9.7328 44 1 4.9928 1.6037 9.1762 45 1 5.0077 1.4183 11.8635 46 1 5.9071 2.0228 15.0205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169244573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:58 Heat of formation + Delta-G solvation = -132.421745 kcal Electronic energy + Delta-G solvation = -24861.656328 eV Core-core repulsion = 20978.601159 eV Total energy + Delta-G solvation = -3883.055169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86710 -38.98205 -38.33743 -36.61149 -34.97323 -33.87981 -33.07642 -32.01488 -31.38086 -31.04971 -27.61889 -26.63398 -24.85994 -23.45054 -22.60076 -22.04016 -21.78664 -20.38802 -19.24927 -18.04234 -17.86110 -16.75539 -16.57252 -16.22520 -15.94830 -15.67782 -15.41294 -15.22127 -14.65494 -14.43532 -14.33646 -14.27531 -13.82230 -13.52905 -13.41240 -13.08247 -12.81052 -12.76264 -12.38070 -12.09626 -11.92076 -11.85223 -11.81392 -11.55590 -11.49352 -11.46679 -11.21416 -11.12638 -10.99194 -10.35957 -10.28283 -10.24222 -10.03680 -9.54111 -9.44478 -8.50307 -8.11072 -7.98231 -6.43732 -3.84713 2.20654 2.70281 3.14908 3.25587 3.32724 3.34175 3.88319 3.94162 4.05401 4.13383 4.23580 4.27118 4.50526 4.69042 4.70280 4.75277 4.92352 4.95557 4.99425 5.08211 5.13936 5.17805 5.23534 5.25803 5.36848 5.41610 5.42651 5.44770 5.56998 5.63189 5.75718 5.79676 5.90705 5.94591 5.97540 6.07835 6.24148 6.42763 7.07537 7.15163 7.53491 7.60340 7.80141 8.04415 8.58955 9.15811 9.52131 10.03308 10.74033 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.045905 B = 0.001557 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.806243 B =17984.242190 C =18355.558855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.094 3.906 3 H 0.084 0.916 4 O -0.374 6.374 5 C 0.049 3.951 6 C -0.148 4.148 7 C -0.144 4.144 8 H 0.114 0.886 9 C 0.524 3.476 10 O -0.535 6.535 11 N -0.726 5.726 12 C 0.119 3.881 13 C -0.129 4.129 14 C 0.062 3.938 15 N -0.670 5.670 16 C 0.050 3.950 17 C 0.440 3.560 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.349 0.651 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.411 -2.758 -26.473 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.036 3.964 3 H 0.102 0.898 4 O -0.293 6.293 5 C -0.028 4.028 6 C -0.186 4.186 7 C -0.166 4.166 8 H 0.132 0.868 9 C 0.309 3.691 10 O -0.412 6.412 11 N -0.378 5.378 12 C -0.004 4.004 13 C -0.167 4.167 14 C -0.068 4.068 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.469 6.469 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.168 0.832 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.226 0.774 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.940 -2.491 -26.848 28.108 hybrid contribution -0.287 -0.205 1.504 1.544 sum -8.227 -2.696 -25.345 26.782 Atomic orbital electron populations 1.21766 0.92479 1.02743 1.03179 1.22948 0.95743 0.95388 0.82325 0.89835 1.88909 1.27652 1.73826 1.38935 1.23112 0.84885 1.00899 0.93941 1.22968 0.95764 1.03402 0.96513 1.22984 0.99071 0.99962 0.94560 0.86825 1.20212 0.77327 0.87695 0.83821 1.90728 1.47644 1.19164 1.83662 1.46027 1.61749 1.17467 1.12544 1.21362 1.01330 0.93573 0.84184 1.21744 1.01915 0.98959 0.94111 1.21826 0.97108 0.96848 0.91001 1.60041 1.56252 1.07464 1.06462 1.21675 0.99518 0.96658 0.90368 1.19807 0.85599 0.88340 0.83686 1.90519 1.56216 1.18523 1.81597 1.41875 1.53062 1.15035 1.10036 1.19764 1.34467 0.98362 0.90354 0.87844 1.25273 0.97911 0.96076 0.98707 1.69621 1.47519 1.12319 1.24797 0.85791 0.78631 0.79693 0.80166 1.19217 1.20722 1.20768 0.90508 0.91553 0.91908 0.92024 0.89392 0.89962 0.89340 0.76334 0.91330 0.91126 0.90108 0.91227 0.95231 0.90759 0.83184 0.93794 0.89533 0.77437 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.66 37.16 0.36 -0.71 16 2 C 0.09 0.78 3.02 -25.68 -0.08 0.70 16 3 H 0.08 0.80 7.53 -51.93 -0.39 0.41 16 4 O -0.37 -3.30 11.22 -35.23 -0.40 -3.70 16 5 C 0.05 0.29 7.70 37.73 0.29 0.58 16 6 C -0.15 -0.75 6.55 -25.20 -0.16 -0.92 16 7 C -0.14 -0.96 2.95 -89.76 -0.26 -1.23 16 8 H 0.11 0.60 8.06 -51.93 -0.42 0.19 16 9 C 0.52 4.69 7.05 -10.98 -0.08 4.61 16 10 O -0.54 -6.81 15.69 5.56 0.09 -6.72 16 11 N -0.73 -5.28 5.50 -60.29 -0.33 -5.61 16 12 C 0.12 1.01 5.67 -4.04 -0.02 0.98 16 13 C -0.13 -1.12 5.59 -26.73 -0.15 -1.27 16 14 C 0.06 0.70 5.69 -3.83 -0.02 0.68 16 15 N -0.67 -10.34 6.12 -115.05 -0.70 -11.04 16 16 C 0.05 0.87 6.17 -4.97 -0.03 0.84 16 17 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 18 O -0.58 -15.76 15.78 5.54 0.09 -15.67 16 19 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 24 Si 0.93 20.93 29.55 -169.99 -5.02 15.90 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.08 0.61 8.03 -51.93 -0.42 0.19 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.44 7.85 -51.93 -0.41 0.03 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.40 1.98 8.47 -40.82 -0.35 1.63 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.35 5.50 8.43 -39.30 -0.33 5.17 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 384.15 15.07 5.79 5.79 Total: -1.00 -33.70 384.15 -7.95 -41.65 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -7.64 Total: 10.91 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.49 Total: 6.49 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.37 Total: -54.66 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.22 Total: -26.09 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.70 -7.95 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169244573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.769 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds