Wall clock time and date at job start Tue Mar 31 2020 04:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.67727 * 2 1 4 4 O 1.44388 * 110.61780 * 237.03486 * 2 1 3 5 5 C 1.43741 * 106.97253 * 201.44100 * 4 2 1 6 6 C 1.54103 * 107.29737 * 26.51254 * 5 4 2 7 7 C 1.54814 * 104.18391 * 357.97123 * 6 5 4 8 8 H 1.09000 * 110.91186 * 97.35611 * 7 6 5 9 9 C 1.50703 * 110.90771 * 220.92081 * 7 6 5 10 10 O 1.21278 * 120.00506 * 118.54222 * 9 7 6 11 11 N 1.34780 * 119.99909 * 298.54954 * 9 7 6 12 12 C 1.46497 * 119.99968 * 179.97438 * 11 9 7 13 13 C 1.53007 * 109.47217 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47290 * 179.97438 * 13 12 11 15 15 N 1.46901 * 109.47125 * 179.97438 * 14 13 12 16 16 C 1.46898 * 110.99614 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46984 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99863 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99509 * 359.71860 * 20 19 17 22 22 C 1.38950 * 120.00048 * 179.72298 * 20 19 17 23 23 N 1.31413 * 119.99930 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47151 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47086 * 119.99941 * 24 22 20 27 27 H 1.48500 * 109.46879 * 239.99997 * 24 22 20 28 28 H 1.08993 * 109.47540 * 297.03930 * 1 2 3 29 29 H 1.09004 * 109.46805 * 57.03883 * 1 2 3 30 30 H 1.09002 * 109.47290 * 177.03179 * 1 2 3 31 31 H 1.08996 * 109.88029 * 267.09049 * 5 4 2 32 32 H 1.09001 * 110.00476 * 146.00590 * 5 4 2 33 33 H 1.08994 * 110.49140 * 239.29501 * 6 5 4 34 34 H 1.09000 * 110.48973 * 116.64541 * 6 5 4 35 35 H 0.96999 * 120.00036 * 359.97438 * 11 9 7 36 36 H 1.09002 * 109.46983 * 59.99865 * 12 11 9 37 37 H 1.08996 * 109.47512 * 299.99722 * 12 11 9 38 38 H 1.08998 * 109.46615 * 60.00142 * 13 12 11 39 39 H 1.08996 * 109.46800 * 300.00339 * 13 12 11 40 40 H 1.09002 * 109.46945 * 60.00024 * 14 13 12 41 41 H 1.09000 * 109.47247 * 300.00386 * 14 13 12 42 42 H 1.00890 * 111.00276 * 303.95677 * 15 14 13 43 43 H 1.09004 * 109.47320 * 60.00702 * 16 15 14 44 44 H 1.09001 * 109.47291 * 299.99999 * 16 15 14 45 45 H 0.96996 * 119.99858 * 359.72084 * 19 17 16 46 46 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 8 2.0385 -0.7353 -1.1338 5 6 3.3839 -1.1255 -0.8118 6 6 3.4795 -1.2168 0.7235 7 6 2.0757 -0.7894 1.2171 8 1 1.4550 -1.6606 1.4265 9 6 2.1795 0.0979 2.4308 10 8 1.7552 1.2333 2.3901 11 7 2.7440 -0.3703 3.5616 12 6 2.8454 0.4924 4.7412 13 6 3.5201 -0.2766 5.8790 14 6 3.6266 0.6246 7.1108 15 7 4.2739 -0.1139 8.2034 16 6 4.3939 0.7222 9.4052 17 6 5.0616 -0.0672 10.5017 18 8 5.4033 -1.2137 10.3017 19 7 5.2780 0.5004 11.7047 20 6 5.8859 -0.2176 12.7021 21 1 6.1871 -1.2395 12.5250 22 6 6.1142 0.3695 13.9406 23 7 5.7480 1.6131 14.1558 24 14 6.9418 -0.6091 15.2997 25 1 7.2529 -1.9750 14.8071 26 1 8.1990 0.0703 15.7037 27 1 6.0307 -0.7006 16.4688 28 1 -0.3634 0.4671 0.9153 29 1 -0.3633 0.5592 -0.8623 30 1 -0.3634 -1.0263 -0.0532 31 1 4.0854 -0.3783 -1.1830 32 1 3.6071 -2.0958 -1.2554 33 1 4.2406 -0.5333 1.0998 34 1 3.6974 -2.2392 1.0321 35 1 3.0832 -1.2785 3.5943 36 1 1.8473 0.8002 5.0531 37 1 3.4378 1.3741 4.4968 38 1 4.5181 -0.5847 5.5674 39 1 2.9274 -1.1581 6.1233 40 1 2.6287 0.9332 7.4225 41 1 4.2195 1.5059 6.8662 42 1 3.7779 -0.9690 8.4054 43 1 3.4016 1.0322 9.7328 44 1 4.9928 1.6037 9.1762 45 1 5.0077 1.4183 11.8635 46 1 5.9071 2.0228 15.0205 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169244573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:58 Heat of formation + Delta-G solvation = -159.640272 kcal Electronic energy + Delta-G solvation = -24862.836612 eV Core-core repulsion = 20978.601159 eV Total energy + Delta-G solvation = -3884.235453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.50434 -40.16782 -39.61517 -37.63839 -36.13611 -35.66172 -33.72780 -33.28081 -32.60305 -32.01605 -28.75109 -27.55057 -26.34967 -24.63348 -23.18818 -22.70810 -22.54237 -21.17440 -20.93678 -19.90812 -18.62997 -17.87683 -17.34400 -17.16836 -17.09552 -16.57895 -16.32899 -16.23839 -16.03407 -15.81689 -15.43574 -15.07933 -14.95165 -14.82825 -14.37832 -14.26849 -13.59385 -13.49837 -13.36097 -13.31732 -13.19272 -12.91228 -12.84639 -12.71891 -12.43342 -12.40334 -12.30950 -12.11010 -12.08852 -11.85173 -11.69959 -11.51607 -10.98509 -10.65001 -10.35805 -10.14102 -10.02143 -9.34075 -8.47242 -5.96206 1.36898 1.42374 1.52394 1.56588 2.04214 2.05066 2.29524 2.79090 2.94983 3.20173 3.45169 3.52204 3.58982 3.72459 4.00569 4.03689 4.13913 4.15747 4.18525 4.27328 4.33980 4.37113 4.48349 4.55925 4.58519 4.60060 4.69122 4.70329 4.78326 4.83997 4.91712 5.01737 5.05981 5.15459 5.19680 5.22178 5.40719 5.40897 5.87933 5.87991 6.09269 6.40657 6.48472 6.59309 7.12011 7.16411 7.55616 8.10525 8.70331 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.045905 B = 0.001557 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.806243 B =17984.242190 C =18355.558855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.089 3.911 3 H 0.062 0.938 4 O -0.392 6.392 5 C 0.040 3.960 6 C -0.142 4.142 7 C -0.137 4.137 8 H 0.134 0.866 9 C 0.523 3.477 10 O -0.578 6.578 11 N -0.714 5.714 12 C 0.126 3.874 13 C -0.115 4.115 14 C 0.062 3.938 15 N -0.683 5.683 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.416 0.584 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.346 0.654 43 H 0.067 0.933 44 H 0.103 0.897 45 H 0.396 0.604 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 -3.543 -26.714 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.031 3.969 3 H 0.080 0.920 4 O -0.312 6.312 5 C -0.036 4.036 6 C -0.179 4.179 7 C -0.158 4.158 8 H 0.152 0.848 9 C 0.310 3.690 10 O -0.458 6.458 11 N -0.366 5.366 12 C 0.002 3.998 13 C -0.153 4.153 14 C -0.067 4.067 15 N -0.316 5.316 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.098 0.902 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.196 1.196 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.253 0.747 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.164 0.836 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.926 -3.276 -27.100 28.425 hybrid contribution -0.293 0.052 1.507 1.536 sum -8.218 -3.224 -25.593 27.072 Atomic orbital electron populations 1.21734 0.92116 1.03321 1.02725 1.22907 0.96150 0.94672 0.83196 0.92023 1.88887 1.29048 1.73825 1.39420 1.23323 0.83672 1.01796 0.94821 1.22985 0.94457 1.04861 0.95636 1.22951 1.00444 0.99699 0.92728 0.84838 1.20590 0.76545 0.87320 0.84554 1.90713 1.49599 1.21111 1.84390 1.45914 1.60983 1.17981 1.11763 1.21204 1.00773 0.93450 0.84408 1.21584 1.02058 0.98680 0.92988 1.21914 0.97365 0.97044 0.90404 1.60043 1.57499 1.07630 1.06421 1.21538 1.00119 0.96126 0.89060 1.20896 0.84272 0.88200 0.84181 1.90485 1.57574 1.20548 1.82370 1.41952 1.53507 1.15138 1.10483 1.19726 1.36599 0.98056 0.92052 0.90232 1.26057 0.97927 0.97052 1.00273 1.69679 1.47650 1.13181 1.25631 0.84852 0.78016 0.77999 0.77345 1.19729 1.19657 1.19600 0.91259 0.91697 0.90776 0.92107 0.87565 0.90275 0.86647 0.74658 0.91905 0.91958 0.90174 0.90340 0.94111 0.90368 0.83574 0.91533 0.87860 0.76968 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.66 71.98 0.70 -1.38 16 2 C 0.09 1.45 3.02 31.28 0.09 1.54 16 3 H 0.06 1.25 7.53 -2.39 -0.02 1.23 16 4 O -0.39 -6.62 11.22 -148.98 -1.67 -8.29 16 5 C 0.04 0.42 7.70 72.36 0.56 0.98 16 6 C -0.14 -1.13 6.55 31.59 0.21 -0.92 16 7 C -0.14 -1.62 2.95 -10.24 -0.03 -1.65 16 8 H 0.13 1.07 8.06 -2.39 -0.02 1.05 16 9 C 0.52 8.83 7.05 87.66 0.62 9.45 16 10 O -0.58 -14.79 15.69 -3.02 -0.05 -14.84 16 11 N -0.71 -9.10 5.50 -463.05 -2.55 -11.65 16 12 C 0.13 1.93 5.67 86.38 0.49 2.42 16 13 C -0.11 -1.76 5.59 30.60 0.17 -1.59 16 14 C 0.06 1.25 5.69 86.30 0.49 1.74 16 15 N -0.68 -20.02 6.12 -517.92 -3.17 -23.19 16 16 C 0.06 2.12 6.17 85.56 0.53 2.65 16 17 C 0.44 20.52 7.82 87.66 0.69 21.21 16 18 O -0.62 -34.08 15.78 -3.08 -0.05 -34.13 16 19 N -0.57 -29.25 5.29 -306.97 -1.62 -30.87 16 20 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -49.44 13.05 21.66 0.28 -49.15 16 24 Si 0.99 42.61 29.55 68.60 2.03 44.63 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H 0.07 1.11 8.03 -2.39 -0.02 1.09 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.70 7.85 -2.39 -0.02 0.68 16 34 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.42 2.98 8.47 -92.71 -0.79 2.19 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.35 10.48 8.43 -89.70 -0.76 9.73 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.40 19.18 7.90 -92.71 -0.73 18.45 16 46 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -73.59 384.15 -2.29 -75.88 By element: Atomic # 1 Polarization: 36.80 SS G_CDS: -1.27 Total: 35.53 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.79 Total: 16.08 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -7.06 Total: -114.87 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -1.77 Total: -57.26 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.63 kcal Total: -73.59 -2.29 -75.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169244573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.759 kcal (2) G-P(sol) polarization free energy of solvation -73.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds