Wall clock time and date at job start Tue Mar 31 2020 04:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.50703 * 109.47264 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99926 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99773 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99642 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47723 * 35.00206 * 7 6 4 9 9 C 1.53001 * 109.47271 * 275.00130 * 7 6 4 10 10 C 1.50697 * 109.47042 * 155.00414 * 7 6 4 11 11 O 1.21281 * 120.00013 * 359.97438 * 10 7 6 12 12 N 1.34783 * 120.00157 * 179.97438 * 10 7 6 13 13 C 1.47422 * 125.64604 * 359.69172 * 12 10 7 14 14 C 1.55136 * 104.72153 * 155.81695 * 13 12 10 15 15 C 1.55158 * 101.48506 * 37.29280 * 14 13 12 16 16 H 1.08994 * 110.71900 * 205.97366 * 15 14 13 17 17 N 1.46500 * 110.71963 * 82.69788 * 15 14 13 18 18 C 1.36934 * 120.00058 * 91.47363 * 17 15 14 19 19 H 1.07998 * 120.00238 * 0.02562 * 18 17 15 20 20 C 1.38808 * 119.99956 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00190 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47072 * 59.99894 * 22 20 18 24 24 H 1.48494 * 109.47305 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46843 * 300.00194 * 22 20 18 26 26 C 1.47017 * 125.64765 * 179.97438 * 12 10 7 27 27 H 1.09007 * 109.88453 * 300.43919 * 26 12 10 28 28 C 1.53001 * 109.88540 * 61.60555 * 26 12 10 29 29 H 1.09002 * 109.46796 * 60.00253 * 1 2 3 30 30 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47036 * 300.00109 * 1 2 3 32 32 H 1.09001 * 109.47103 * 300.00246 * 3 2 1 33 33 H 1.09004 * 109.47054 * 59.99750 * 3 2 1 34 34 H 0.96998 * 120.00166 * 0.02562 * 6 4 3 35 35 H 1.09004 * 109.47249 * 180.02562 * 9 7 6 36 36 H 1.09007 * 109.47219 * 300.00161 * 9 7 6 37 37 H 1.09001 * 109.47043 * 59.99678 * 9 7 6 38 38 H 1.09003 * 110.36484 * 274.74517 * 13 12 10 39 39 H 1.09000 * 110.36708 * 37.07135 * 13 12 10 40 40 H 1.09000 * 111.19088 * 279.19107 * 14 13 12 41 41 H 1.09000 * 110.93548 * 155.28822 * 14 13 12 42 42 H 0.97002 * 120.00030 * 271.47568 * 17 15 14 43 43 H 0.96998 * 120.00143 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.46567 * 58.54470 * 28 26 12 45 45 H 1.09005 * 109.47127 * 178.54435 * 28 26 12 46 46 H 1.09003 * 109.47255 * 298.54625 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 8 4.0342 0.0916 0.0006 6 7 4.2765 2.2969 0.0002 7 6 5.7369 2.1812 0.0003 8 1 6.0327 1.3131 -0.5888 9 6 6.2354 2.0160 1.4373 10 6 6.3393 3.4250 -0.6005 11 8 5.6196 4.3197 -0.9908 12 7 7.6780 3.5430 -0.7042 13 6 8.6654 2.5399 -0.2661 14 6 9.9250 2.8250 -1.1258 15 6 9.9032 4.3745 -1.2013 16 1 10.4117 4.7240 -2.0998 17 7 10.5063 4.9604 -0.0016 18 6 11.8443 5.2513 0.0199 19 1 12.4548 5.0493 -0.8477 20 6 12.4156 5.8070 1.1564 21 7 11.6712 6.0547 2.2133 22 14 14.2406 6.2045 1.1854 23 1 14.5512 7.1832 0.1127 24 1 14.5998 6.7855 2.5040 25 1 15.0216 4.9613 0.9624 26 6 8.3953 4.6961 -1.2675 27 1 8.0942 4.8499 -2.3038 28 6 8.0941 5.9496 -0.4436 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.8593 3.1726 -0.0001 35 1 7.3220 1.9304 1.4374 36 1 5.9396 2.8842 2.0265 37 1 5.7996 1.1164 1.8720 38 1 8.8897 2.6659 0.7931 39 1 8.2948 1.5332 -0.4592 40 1 9.8326 2.3841 -2.1184 41 1 10.8263 2.4707 -0.6255 42 1 9.9579 5.1423 0.7776 43 1 12.0705 6.4426 3.0076 44 1 8.3926 5.7842 0.5916 45 1 8.6493 6.7945 -0.8513 46 1 7.0260 6.1631 -0.4841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178768417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:44 Heat of formation + Delta-G solvation = -88.548899 kcal Electronic energy + Delta-G solvation = -26968.651016 eV Core-core repulsion = 23087.498316 eV Total energy + Delta-G solvation = -3881.152700 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62868 -39.64394 -37.95401 -37.42018 -35.05766 -34.10594 -32.15194 -31.01406 -30.71163 -29.00806 -28.49223 -26.24522 -25.34702 -24.51775 -23.59405 -22.17432 -20.73428 -19.99708 -18.80074 -17.91224 -17.44370 -17.09526 -16.60143 -16.50128 -15.88949 -15.55804 -15.32300 -14.95873 -14.58631 -14.33303 -13.87955 -13.83678 -13.45871 -13.30966 -13.15536 -12.93296 -12.66243 -12.43725 -12.32361 -12.09572 -11.82879 -11.79201 -11.65063 -11.32342 -11.02462 -10.99580 -10.78691 -10.63759 -10.29119 -10.17599 -10.11133 -10.02631 -9.71901 -9.64819 -9.28082 -8.99833 -8.43395 -7.08014 -5.86141 -3.15910 2.35902 2.42760 2.66358 3.19168 3.38631 3.43861 3.44511 3.77000 4.37431 4.49715 4.51356 4.74244 4.78344 4.94886 4.96895 4.98728 5.00736 5.03805 5.19616 5.29315 5.38657 5.52028 5.53584 5.58484 5.68070 5.70735 5.76853 5.92063 6.02268 6.09897 6.15845 6.28817 6.36673 6.45992 6.56335 6.58992 6.66602 6.79753 6.95799 7.28372 7.62071 7.68577 7.99626 8.19834 8.32087 9.43819 9.98129 10.33148 11.35873 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.002588 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.221069 B =10816.211377 C =10928.681509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.045 3.955 4 C 0.517 3.483 5 O -0.521 6.521 6 N -0.710 5.710 7 C 0.132 3.868 8 H 0.112 0.888 9 C -0.168 4.168 10 C 0.525 3.475 11 O -0.546 6.546 12 N -0.599 5.599 13 C 0.099 3.901 14 C -0.160 4.160 15 C 0.172 3.828 16 H 0.071 0.929 17 N -0.713 5.713 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C 0.126 3.874 27 H 0.071 0.929 28 C -0.148 4.148 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.410 0.590 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.388 0.612 43 H 0.257 0.743 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.111 -8.330 -4.377 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.035 4.035 4 C 0.302 3.698 5 O -0.395 6.395 6 N -0.366 5.366 7 C 0.024 3.976 8 H 0.130 0.870 9 C -0.226 4.226 10 C 0.312 3.688 11 O -0.424 6.424 12 N -0.333 5.333 13 C -0.023 4.023 14 C -0.202 4.202 15 C 0.059 3.941 16 H 0.089 0.911 17 N -0.355 5.355 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.023 3.977 27 H 0.089 0.911 28 C -0.207 4.207 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.247 0.753 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.067 0.933 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.889 -8.773 -4.578 20.444 hybrid contribution 0.470 0.924 0.395 1.110 sum -17.420 -7.848 -4.183 19.559 Atomic orbital electron populations 1.22846 0.80289 1.03350 1.00199 1.88014 1.19842 1.25157 1.95454 1.22205 0.91350 0.87032 1.02952 1.20212 0.88719 0.84360 0.76503 1.90736 1.74522 1.26400 1.47883 1.45620 1.05644 1.09654 1.75684 1.20690 0.80631 0.97495 0.98807 0.87013 1.22280 1.03088 1.03234 0.93988 1.20050 0.81400 0.88212 0.79119 1.90655 1.59722 1.41764 1.50297 1.48556 1.04306 1.20332 1.60057 1.22551 0.89001 0.90921 0.99874 1.23586 0.97098 1.00764 0.98720 1.21198 0.89273 0.90937 0.92649 0.91091 1.42537 1.07347 1.73274 1.12320 1.19187 0.85007 1.34663 0.98747 0.91060 1.24746 0.97990 1.01565 0.96261 1.69644 1.34786 1.49245 1.04133 0.86265 0.85075 0.78098 0.76683 1.21246 1.21745 1.21224 1.22069 0.92972 0.85798 0.96902 0.91051 1.21918 1.00819 0.96726 1.01198 0.93747 0.89051 0.93737 0.89951 0.89999 0.75311 0.89826 0.91650 0.90949 0.90390 0.91352 0.91896 0.89251 0.77542 0.93347 0.91490 0.91416 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -3.99 10.24 -55.14 -0.56 -4.56 16 3 C 0.04 0.39 6.42 36.01 0.23 0.62 16 4 C 0.52 6.30 7.87 -10.98 -0.09 6.22 16 5 O -0.52 -8.45 16.16 -14.35 -0.23 -8.68 16 6 N -0.71 -8.09 4.95 -54.94 -0.27 -8.36 16 7 C 0.13 1.67 2.33 -69.09 -0.16 1.51 16 8 H 0.11 1.45 7.29 -51.93 -0.38 1.08 16 9 C -0.17 -1.98 9.29 37.16 0.35 -1.64 16 10 C 0.53 7.84 7.08 -10.98 -0.08 7.76 16 11 O -0.55 -9.30 14.87 5.56 0.08 -9.22 16 12 N -0.60 -9.07 3.06 -162.87 -0.50 -9.57 16 13 C 0.10 1.39 5.12 -2.41 -0.01 1.38 16 14 C -0.16 -2.45 6.78 -24.46 -0.17 -2.62 16 15 C 0.17 3.08 3.48 -66.09 -0.23 2.85 16 16 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 17 N -0.71 -16.12 4.54 -51.65 -0.23 -16.35 16 18 C -0.25 -6.28 9.96 -15.06 -0.15 -6.43 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -26.66 13.06 55.49 0.72 -25.93 16 22 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 26 C 0.13 2.10 3.43 -66.95 -0.23 1.87 16 27 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 28 C -0.15 -2.67 8.51 37.16 0.32 -2.35 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.41 4.14 7.79 -40.82 -0.32 3.83 16 35 H 0.08 0.98 4.98 -51.93 -0.26 0.72 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.18 7.08 -51.93 -0.37 0.81 16 39 H 0.07 0.80 7.34 -51.93 -0.38 0.42 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.39 9.45 5.67 -40.82 -0.23 9.22 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.07 1.34 6.20 -51.93 -0.32 1.02 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.05 0.96 6.88 -51.93 -0.36 0.60 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -32.36 371.56 -6.85 -39.22 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.23 Total: 11.34 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 0.80 Total: 10.12 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.28 Total: -60.21 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.71 Total: -22.45 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.36 -6.85 -39.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178768417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.333 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds