Wall clock time and date at job start Tue Mar 31 2020 04:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42905 * 114.00134 * 2 1 4 4 C 1.50703 * 109.47264 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99926 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99773 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99642 * 180.02562 * 6 4 3 8 8 H 1.08998 * 109.47723 * 35.00206 * 7 6 4 9 9 C 1.53001 * 109.47271 * 275.00130 * 7 6 4 10 10 C 1.50697 * 109.47042 * 155.00414 * 7 6 4 11 11 O 1.21281 * 120.00013 * 359.97438 * 10 7 6 12 12 N 1.34783 * 120.00157 * 179.97438 * 10 7 6 13 13 C 1.47422 * 125.64604 * 359.69172 * 12 10 7 14 14 C 1.55136 * 104.72153 * 155.81695 * 13 12 10 15 15 C 1.55158 * 101.48506 * 37.29280 * 14 13 12 16 16 H 1.08994 * 110.71900 * 205.97366 * 15 14 13 17 17 N 1.46500 * 110.71963 * 82.69788 * 15 14 13 18 18 C 1.36934 * 120.00058 * 91.47363 * 17 15 14 19 19 H 1.07998 * 120.00238 * 0.02562 * 18 17 15 20 20 C 1.38808 * 119.99956 * 179.97438 * 18 17 15 21 21 N 1.31624 * 120.00190 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 120.00166 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47072 * 59.99894 * 22 20 18 24 24 H 1.48494 * 109.47305 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46843 * 300.00194 * 22 20 18 26 26 C 1.47017 * 125.64765 * 179.97438 * 12 10 7 27 27 H 1.09007 * 109.88453 * 300.43919 * 26 12 10 28 28 C 1.53001 * 109.88540 * 61.60555 * 26 12 10 29 29 H 1.09002 * 109.46796 * 60.00253 * 1 2 3 30 30 H 1.08994 * 109.46829 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47036 * 300.00109 * 1 2 3 32 32 H 1.09001 * 109.47103 * 300.00246 * 3 2 1 33 33 H 1.09004 * 109.47054 * 59.99750 * 3 2 1 34 34 H 0.96998 * 120.00166 * 0.02562 * 6 4 3 35 35 H 1.09004 * 109.47249 * 180.02562 * 9 7 6 36 36 H 1.09007 * 109.47219 * 300.00161 * 9 7 6 37 37 H 1.09001 * 109.47043 * 59.99678 * 9 7 6 38 38 H 1.09003 * 110.36484 * 274.74517 * 13 12 10 39 39 H 1.09000 * 110.36708 * 37.07135 * 13 12 10 40 40 H 1.09000 * 111.19088 * 279.19107 * 14 13 12 41 41 H 1.09000 * 110.93548 * 155.28822 * 14 13 12 42 42 H 0.97002 * 120.00030 * 271.47568 * 17 15 14 43 43 H 0.96998 * 120.00143 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.46567 * 58.54470 * 28 26 12 45 45 H 1.09005 * 109.47127 * 178.54435 * 28 26 12 46 46 H 1.09003 * 109.47255 * 298.54625 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 8 4.0342 0.0916 0.0006 6 7 4.2765 2.2969 0.0002 7 6 5.7369 2.1812 0.0003 8 1 6.0327 1.3131 -0.5888 9 6 6.2354 2.0160 1.4373 10 6 6.3393 3.4250 -0.6005 11 8 5.6196 4.3197 -0.9908 12 7 7.6780 3.5430 -0.7042 13 6 8.6654 2.5399 -0.2661 14 6 9.9250 2.8250 -1.1258 15 6 9.9032 4.3745 -1.2013 16 1 10.4117 4.7240 -2.0998 17 7 10.5063 4.9604 -0.0016 18 6 11.8443 5.2513 0.0199 19 1 12.4548 5.0493 -0.8477 20 6 12.4156 5.8070 1.1564 21 7 11.6712 6.0547 2.2133 22 14 14.2406 6.2045 1.1854 23 1 14.5512 7.1832 0.1127 24 1 14.5998 6.7855 2.5040 25 1 15.0216 4.9613 0.9624 26 6 8.3953 4.6961 -1.2675 27 1 8.0942 4.8499 -2.3038 28 6 8.0941 5.9496 -0.4436 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 3.8593 3.1726 -0.0001 35 1 7.3220 1.9304 1.4374 36 1 5.9396 2.8842 2.0265 37 1 5.7996 1.1164 1.8720 38 1 8.8897 2.6659 0.7931 39 1 8.2948 1.5332 -0.4592 40 1 9.8326 2.3841 -2.1184 41 1 10.8263 2.4707 -0.6255 42 1 9.9579 5.1423 0.7776 43 1 12.0705 6.4426 3.0076 44 1 8.3926 5.7842 0.5916 45 1 8.6493 6.7945 -0.8513 46 1 7.0260 6.1631 -0.4841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178768417.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:44 Heat of formation + Delta-G solvation = -111.639557 kcal Electronic energy + Delta-G solvation = -26969.652302 eV Core-core repulsion = 23087.498316 eV Total energy + Delta-G solvation = -3882.153986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.77503 -40.70230 -39.05960 -38.35498 -36.13633 -35.77059 -33.62504 -32.40316 -31.95980 -30.40789 -29.36436 -26.96624 -26.68238 -25.69212 -25.36607 -23.34828 -21.74432 -21.27550 -20.05027 -19.40718 -18.81101 -18.02877 -17.64072 -17.27744 -17.11719 -16.54766 -16.48885 -16.22126 -15.81987 -15.60135 -15.36268 -15.09742 -14.76937 -14.47877 -14.18315 -14.10550 -13.98369 -13.60219 -13.32613 -13.20789 -13.08442 -12.98044 -12.83924 -12.69982 -12.51751 -12.36640 -12.35069 -12.16114 -12.08535 -11.60931 -11.43696 -11.02085 -10.90957 -10.87709 -10.76437 -10.30749 -9.70007 -8.97202 -7.90094 -5.17621 1.41504 1.42300 1.51856 1.52922 1.57062 1.58757 2.10391 2.59469 3.09365 3.24636 3.42866 3.66426 3.74264 3.88183 3.94171 3.99689 4.01574 4.19526 4.26581 4.28300 4.29576 4.39035 4.51883 4.52454 4.58872 4.65209 4.67875 4.72573 4.83545 4.88722 4.95276 5.07342 5.11715 5.18304 5.23120 5.35903 5.37388 5.46075 5.59482 6.01569 6.31394 6.41689 6.47396 6.96264 7.10234 7.39323 8.12987 8.36553 9.32726 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.002588 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.221069 B =10816.211377 C =10928.681509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.047 3.953 4 C 0.515 3.485 5 O -0.566 6.566 6 N -0.704 5.704 7 C 0.138 3.862 8 H 0.113 0.887 9 C -0.161 4.161 10 C 0.526 3.474 11 O -0.567 6.567 12 N -0.599 5.599 13 C 0.102 3.898 14 C -0.149 4.149 15 C 0.163 3.837 16 H 0.075 0.925 17 N -0.722 5.722 18 C -0.234 4.234 19 H 0.080 0.920 20 C -0.072 4.072 21 N -0.968 5.968 22 Si 0.967 3.033 23 H -0.281 1.281 24 H -0.302 1.302 25 H -0.278 1.278 26 C 0.132 3.868 27 H 0.084 0.916 28 C -0.136 4.136 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.418 0.582 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.377 0.623 43 H 0.248 0.752 44 H 0.042 0.958 45 H 0.057 0.943 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.103 -9.119 -5.559 21.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.032 4.032 4 C 0.302 3.698 5 O -0.444 6.444 6 N -0.359 5.359 7 C 0.030 3.970 8 H 0.130 0.870 9 C -0.219 4.219 10 C 0.314 3.686 11 O -0.447 6.447 12 N -0.332 5.332 13 C -0.020 4.020 14 C -0.190 4.190 15 C 0.053 3.947 16 H 0.093 0.907 17 N -0.364 5.364 18 C -0.366 4.366 19 H 0.098 0.902 20 C -0.265 4.265 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.208 1.208 24 H -0.229 1.229 25 H -0.204 1.204 26 C 0.028 3.972 27 H 0.102 0.898 28 C -0.194 4.194 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.256 0.744 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.109 0.891 41 H 0.095 0.905 42 H 0.212 0.788 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.902 -9.573 -5.812 21.971 hybrid contribution 0.690 1.164 0.677 1.513 sum -18.212 -8.409 -5.135 20.707 Atomic orbital electron populations 1.23044 0.78194 1.04231 1.01671 1.87956 1.22200 1.26469 1.95811 1.22324 0.88543 0.86916 1.05465 1.20896 0.90258 0.83538 0.75109 1.90711 1.75589 1.28002 1.50130 1.45602 1.05099 1.10069 1.75137 1.20598 0.81450 0.96047 0.98938 0.86950 1.22218 1.03135 1.03140 0.93395 1.20406 0.81033 0.88578 0.78536 1.90645 1.60135 1.42720 1.51175 1.48545 1.04630 1.19991 1.60009 1.22580 0.88374 0.92111 0.98925 1.23439 0.97117 0.98054 1.00347 1.21411 0.89827 0.92619 0.90868 0.90731 1.42645 1.06467 1.73834 1.13419 1.19571 0.86338 1.32257 0.98392 0.90242 1.25449 1.01560 1.03020 0.96451 1.69798 1.36088 1.51359 1.04599 0.85304 0.81049 0.77954 0.75963 1.20760 1.22905 1.20429 1.21898 0.92281 0.85711 0.97288 0.89824 1.21757 1.00494 0.97290 0.99859 0.92282 0.88625 0.92180 0.87442 0.87148 0.74411 0.89692 0.91852 0.90837 0.91657 0.88289 0.89076 0.90548 0.78785 0.94273 0.93897 0.92379 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -8.20 10.24 -129.94 -1.33 -9.53 16 3 C 0.05 0.71 6.42 71.24 0.46 1.17 16 4 C 0.51 11.82 7.87 87.66 0.69 12.51 16 5 O -0.57 -18.03 16.16 16.01 0.26 -17.77 16 6 N -0.70 -14.89 4.95 -446.11 -2.21 -17.10 16 7 C 0.14 3.29 2.33 44.25 0.10 3.39 16 8 H 0.11 2.73 7.29 -2.39 -0.02 2.71 16 9 C -0.16 -3.61 9.29 71.98 0.67 -2.94 16 10 C 0.53 14.91 7.08 87.66 0.62 15.53 16 11 O -0.57 -18.51 14.87 -3.03 -0.05 -18.55 16 12 N -0.60 -17.20 3.06 -787.60 -2.41 -19.61 16 13 C 0.10 2.68 5.12 86.94 0.44 3.12 16 14 C -0.15 -4.23 6.78 32.07 0.22 -4.01 16 15 C 0.16 5.65 3.48 46.18 0.16 5.82 16 16 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 17 N -0.72 -32.66 4.54 -317.34 -1.44 -34.10 16 18 C -0.23 -11.91 9.96 84.03 0.84 -11.07 16 19 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 20 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 21 N -0.97 -56.67 13.06 21.65 0.28 -56.39 16 22 Si 0.97 44.31 29.55 68.60 2.03 46.34 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 26 C 0.13 4.24 3.43 45.34 0.16 4.39 16 27 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 28 C -0.14 -4.89 8.51 71.98 0.61 -4.28 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.42 7.67 7.79 -92.71 -0.72 6.95 16 35 H 0.08 1.88 4.98 -2.39 -0.01 1.87 16 36 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.92 7.08 -2.39 -0.02 1.90 16 39 H 0.10 2.03 7.34 -2.39 -0.02 2.02 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.38 18.72 5.67 -92.71 -0.53 18.20 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.58 16 44 H 0.04 1.75 6.20 -2.39 -0.01 1.73 16 45 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 46 H 0.05 1.93 6.88 -2.39 -0.02 1.91 16 Total: -1.00 -70.28 371.56 1.57 -68.71 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: -0.25 Total: 36.35 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: 6.68 Total: 21.66 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -5.78 Total: -127.21 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.12 Total: -45.85 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -70.28 1.57 -68.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178768417.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.927 kcal (2) G-P(sol) polarization free energy of solvation -70.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds