Wall clock time and date at job start Tue Mar 31 2020 04:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 O 1.42898 * 109.46917 * 120.00218 * 2 1 3 5 5 C 1.42906 * 113.99915 * 149.99933 * 4 2 1 6 6 C 1.50701 * 109.46934 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00236 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99916 * 179.97438 * 6 5 4 9 9 C 1.47426 * 125.64729 * 0.02571 * 8 6 5 10 10 C 1.54910 * 104.83209 * 155.85030 * 9 8 6 11 11 C 1.55154 * 101.58031 * 37.01037 * 10 9 8 12 12 H 1.08995 * 110.87338 * 82.93395 * 11 10 9 13 13 N 1.46903 * 110.71882 * 206.13764 * 11 10 9 14 14 C 1.46902 * 110.99497 * 268.52269 * 13 11 10 15 15 C 1.50705 * 109.47080 * 180.02562 * 14 13 11 16 16 O 1.21291 * 119.99593 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00166 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99671 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00266 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99634 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99693 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99846 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46706 * 89.99829 * 22 20 18 24 24 H 1.48499 * 109.47108 * 209.99824 * 22 20 18 25 25 H 1.48496 * 109.47198 * 330.00185 * 22 20 18 26 26 C 1.47019 * 125.65061 * 179.97438 * 8 6 5 27 27 H 1.08994 * 109.47278 * 300.00033 * 1 2 3 28 28 H 1.09002 * 109.46924 * 59.99533 * 1 2 3 29 29 H 1.08996 * 109.47264 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47035 * 240.00372 * 2 1 3 31 31 H 1.09009 * 109.47286 * 60.00163 * 3 2 1 32 32 H 1.09000 * 109.47220 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47552 * 300.00083 * 3 2 1 34 34 H 1.09004 * 109.46838 * 60.00081 * 5 4 2 35 35 H 1.08995 * 109.47149 * 299.99951 * 5 4 2 36 36 H 1.08998 * 110.36718 * 274.68923 * 9 8 6 37 37 H 1.09005 * 110.36600 * 37.01484 * 9 8 6 38 38 H 1.09002 * 111.00097 * 155.08840 * 10 9 8 39 39 H 1.08999 * 111.00452 * 278.93764 * 10 9 8 40 40 H 1.00900 * 111.00375 * 32.47199 * 13 11 10 41 41 H 1.09006 * 109.47123 * 299.99493 * 14 13 11 42 42 H 1.09000 * 109.47403 * 59.99871 * 14 13 11 43 43 H 0.96996 * 119.99806 * 0.02562 * 17 15 14 44 44 H 0.97004 * 119.99134 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.88389 * 300.50344 * 26 8 6 46 46 H 1.09004 * 109.87600 * 61.51301 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9886 6 6 3.6698 -1.9979 2.2749 7 8 2.9496 -1.9278 3.2482 8 7 4.8308 -2.6790 2.3434 9 6 5.7963 -2.8441 1.2416 10 6 7.1518 -3.1179 1.9398 11 6 6.7104 -3.9875 3.1465 12 1 6.5995 -5.0314 2.8531 13 7 7.6651 -3.8601 4.2558 14 6 8.7069 -4.8925 4.1748 15 6 9.6651 -4.7306 5.3267 16 8 9.4969 -3.8423 6.1352 17 7 10.7090 -5.5730 5.4584 18 6 11.5809 -5.4253 6.5060 19 1 11.4316 -4.6338 7.2255 20 6 12.6574 -6.2934 6.6415 21 7 12.8393 -7.2562 5.7658 22 14 13.8459 -6.0918 8.0685 23 1 13.3722 -6.8949 9.2244 24 1 15.1944 -6.5605 7.6596 25 1 13.9158 -4.6600 8.4561 26 6 5.3447 -3.3794 3.5294 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 4.0200 -0.5874 0.7125 35 1 3.1809 -2.0707 0.1986 36 1 5.5151 -3.6899 0.6142 37 1 5.8533 -1.9321 0.6472 38 1 7.8240 -3.6716 1.2843 39 1 7.6130 -2.1892 2.2755 40 1 8.0718 -2.9370 4.2786 41 1 8.2455 -5.8789 4.2225 42 1 9.2482 -4.7896 3.2343 43 1 10.8437 -6.2831 4.8116 44 1 13.5907 -7.8624 5.8607 45 1 5.4700 -2.6742 4.3511 46 1 4.6534 -4.1698 3.8216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181386708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:23 Heat of formation + Delta-G solvation = -113.153420 kcal Electronic energy + Delta-G solvation = -25441.351452 eV Core-core repulsion = 21559.131820 eV Total energy + Delta-G solvation = -3882.219632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36901 -38.87774 -38.24642 -37.46964 -34.79321 -33.82381 -33.16689 -31.30067 -30.81832 -29.48946 -27.93695 -27.49557 -25.89409 -23.96344 -23.26837 -21.75227 -21.03345 -19.67068 -19.31117 -17.95214 -17.57414 -17.25095 -16.65254 -16.12526 -15.92853 -15.56173 -15.22945 -14.60311 -14.54262 -14.49377 -14.04816 -13.69396 -13.67843 -13.42457 -13.23366 -12.94331 -12.82058 -12.61468 -12.56387 -12.35126 -12.30472 -12.11139 -11.84945 -11.68675 -11.50221 -11.42475 -11.16092 -11.06297 -11.00919 -10.40680 -10.23735 -10.07327 -9.94682 -9.53118 -8.86312 -8.51975 -8.13085 -7.98547 -6.43998 -3.84752 2.37953 2.40969 3.16933 3.25794 3.31564 3.46949 3.87337 3.98671 4.15253 4.20693 4.34739 4.46316 4.57136 4.62845 4.68543 4.73833 4.78414 4.85828 5.03382 5.08735 5.15651 5.17933 5.19687 5.24668 5.28214 5.37387 5.42182 5.53773 5.68937 5.70419 5.76231 5.80046 5.82490 5.90530 5.93043 6.03866 6.23589 6.73437 7.11445 7.25425 7.53401 7.54144 7.97431 8.03896 8.58601 9.15745 9.51493 10.02810 10.73632 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.046341 B = 0.001824 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.074998 B =15343.845984 C =15464.284046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.358 6.358 5 C 0.050 3.950 6 C 0.528 3.472 7 O -0.516 6.516 8 N -0.620 5.620 9 C 0.100 3.900 10 C -0.167 4.167 11 C 0.080 3.920 12 H 0.095 0.905 13 N -0.658 5.658 14 C 0.052 3.948 15 C 0.439 3.561 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.117 3.883 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.354 0.646 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.081 0.919 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.291 9.539 -19.246 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.030 4.030 6 C 0.315 3.685 7 O -0.390 6.390 8 N -0.357 5.357 9 C -0.023 4.023 10 C -0.207 4.207 11 C -0.032 4.032 12 H 0.113 0.887 13 N -0.290 5.290 14 C -0.080 4.080 15 C 0.224 3.776 16 O -0.467 6.467 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.005 4.005 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.175 0.825 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.212 9.725 -17.533 27.086 hybrid contribution 1.571 -0.146 -0.852 1.793 sum -16.641 9.580 -18.385 26.584 Atomic orbital electron populations 1.21854 0.93197 1.02950 1.02694 1.22181 0.95419 0.92509 0.87761 1.22321 1.01534 0.96693 1.02886 1.88075 1.34555 1.69682 1.35314 1.22182 0.88148 0.96977 0.95648 1.19851 0.80024 0.78811 0.89819 1.90756 1.51070 1.59484 1.37735 1.48419 1.20050 1.53048 1.14200 1.22329 0.88524 1.01628 0.89867 1.23597 0.96367 1.01634 0.99097 1.22607 0.92224 0.99405 0.88917 0.88674 1.59943 1.18271 1.08140 1.42635 1.21705 0.92719 0.96407 0.97210 1.19789 0.83814 0.85520 0.88429 1.90538 1.75172 1.35676 1.45281 1.41853 1.23236 1.28722 1.26128 1.19714 1.04111 1.14671 1.04463 0.87892 1.25264 0.98367 0.95605 0.98664 1.69613 1.31281 1.17555 1.35838 0.85850 0.78976 0.78836 0.80589 1.20361 1.20943 1.19425 1.21933 0.94175 0.96786 0.87652 0.91514 0.91110 0.91852 0.92065 0.91470 0.92488 0.91466 0.90451 0.90377 0.90866 0.90662 0.89434 0.89997 0.82508 0.89420 0.93631 0.77459 0.91869 0.90053 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.56 37.16 0.36 -0.60 16 2 C 0.08 0.57 3.34 -26.73 -0.09 0.48 16 3 C -0.18 -1.10 9.53 37.16 0.35 -0.74 16 4 O -0.36 -3.93 9.52 -55.14 -0.52 -4.45 16 5 C 0.05 0.45 5.23 36.01 0.19 0.63 16 6 C 0.53 6.68 7.93 -10.98 -0.09 6.59 16 7 O -0.52 -9.05 16.83 -14.35 -0.24 -9.29 16 8 N -0.62 -6.67 3.33 -170.52 -0.57 -7.24 16 9 C 0.10 0.71 6.69 -2.53 -0.02 0.69 16 10 C -0.17 -1.39 6.67 -24.58 -0.16 -1.55 16 11 C 0.08 0.89 3.28 -65.88 -0.22 0.67 16 12 H 0.10 0.96 7.82 -51.93 -0.41 0.55 16 13 N -0.66 -9.92 5.93 -106.05 -0.63 -10.55 16 14 C 0.05 0.85 6.03 -4.97 -0.03 0.82 16 15 C 0.44 10.10 7.82 -10.98 -0.09 10.01 16 16 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 17 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.19 13.05 55.50 0.72 -23.47 16 22 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.12 1.44 6.62 -3.07 -0.02 1.42 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.32 7.79 -51.93 -0.40 -0.08 16 31 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.06 0.34 7.87 -51.93 -0.41 -0.07 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.51 7.58 -51.93 -0.39 0.12 16 35 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.39 7.48 -51.93 -0.39 0.00 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.74 7.77 -51.93 -0.40 0.33 16 40 H 0.35 5.56 7.91 -39.29 -0.31 5.25 16 41 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -34.87 383.52 -8.11 -42.99 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.61 Total: 9.45 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -0.05 Total: 10.48 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.53 Total: -55.29 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.68 Total: -29.30 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.87 -8.11 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181386708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.164 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds