Wall clock time and date at job start Tue Mar 31 2020 04:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47222 * 2 1 4 4 O 1.42898 * 109.46917 * 120.00218 * 2 1 3 5 5 C 1.42906 * 113.99915 * 149.99933 * 4 2 1 6 6 C 1.50701 * 109.46934 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00236 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99916 * 179.97438 * 6 5 4 9 9 C 1.47426 * 125.64729 * 0.02571 * 8 6 5 10 10 C 1.54910 * 104.83209 * 155.85030 * 9 8 6 11 11 C 1.55154 * 101.58031 * 37.01037 * 10 9 8 12 12 H 1.08995 * 110.87338 * 82.93395 * 11 10 9 13 13 N 1.46903 * 110.71882 * 206.13764 * 11 10 9 14 14 C 1.46902 * 110.99497 * 268.52269 * 13 11 10 15 15 C 1.50705 * 109.47080 * 180.02562 * 14 13 11 16 16 O 1.21291 * 119.99593 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00166 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99671 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00266 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99634 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99693 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99846 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46706 * 89.99829 * 22 20 18 24 24 H 1.48499 * 109.47108 * 209.99824 * 22 20 18 25 25 H 1.48496 * 109.47198 * 330.00185 * 22 20 18 26 26 C 1.47019 * 125.65061 * 179.97438 * 8 6 5 27 27 H 1.08994 * 109.47278 * 300.00033 * 1 2 3 28 28 H 1.09002 * 109.46924 * 59.99533 * 1 2 3 29 29 H 1.08996 * 109.47264 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47035 * 240.00372 * 2 1 3 31 31 H 1.09009 * 109.47286 * 60.00163 * 3 2 1 32 32 H 1.09000 * 109.47220 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47552 * 300.00083 * 3 2 1 34 34 H 1.09004 * 109.46838 * 60.00081 * 5 4 2 35 35 H 1.08995 * 109.47149 * 299.99951 * 5 4 2 36 36 H 1.08998 * 110.36718 * 274.68923 * 9 8 6 37 37 H 1.09005 * 110.36600 * 37.01484 * 9 8 6 38 38 H 1.09002 * 111.00097 * 155.08840 * 10 9 8 39 39 H 1.08999 * 111.00452 * 278.93764 * 10 9 8 40 40 H 1.00900 * 111.00375 * 32.47199 * 13 11 10 41 41 H 1.09006 * 109.47123 * 299.99493 * 14 13 11 42 42 H 1.09000 * 109.47403 * 59.99871 * 14 13 11 43 43 H 0.96996 * 119.99806 * 0.02562 * 17 15 14 44 44 H 0.97004 * 119.99134 * 180.02562 * 21 20 18 45 45 H 1.09001 * 109.88389 * 300.50344 * 26 8 6 46 46 H 1.09004 * 109.87600 * 61.51301 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2660 -1.3246 0.9886 6 6 3.6698 -1.9979 2.2749 7 8 2.9496 -1.9278 3.2482 8 7 4.8308 -2.6790 2.3434 9 6 5.7963 -2.8441 1.2416 10 6 7.1518 -3.1179 1.9398 11 6 6.7104 -3.9875 3.1465 12 1 6.5995 -5.0314 2.8531 13 7 7.6651 -3.8601 4.2558 14 6 8.7069 -4.8925 4.1748 15 6 9.6651 -4.7306 5.3267 16 8 9.4969 -3.8423 6.1352 17 7 10.7090 -5.5730 5.4584 18 6 11.5809 -5.4253 6.5060 19 1 11.4316 -4.6338 7.2255 20 6 12.6574 -6.2934 6.6415 21 7 12.8393 -7.2562 5.7658 22 14 13.8459 -6.0918 8.0685 23 1 13.3722 -6.8949 9.2244 24 1 15.1944 -6.5605 7.6596 25 1 13.9158 -4.6600 8.4561 26 6 5.3447 -3.3794 3.5294 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 4.0200 -0.5874 0.7125 35 1 3.1809 -2.0707 0.1986 36 1 5.5151 -3.6899 0.6142 37 1 5.8533 -1.9321 0.6472 38 1 7.8240 -3.6716 1.2843 39 1 7.6130 -2.1892 2.2755 40 1 8.0718 -2.9370 4.2786 41 1 8.2455 -5.8789 4.2225 42 1 9.2482 -4.7896 3.2343 43 1 10.8437 -6.2831 4.8116 44 1 13.5907 -7.8624 5.8607 45 1 5.4700 -2.6742 4.3511 46 1 4.6534 -4.1698 3.8216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181386708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:22 Heat of formation + Delta-G solvation = -139.827127 kcal Electronic energy + Delta-G solvation = -25442.508111 eV Core-core repulsion = 21559.131820 eV Total energy + Delta-G solvation = -3883.376291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.25560 -40.18380 -39.39633 -38.49079 -36.20085 -35.56452 -33.73497 -33.26551 -31.83593 -30.29484 -28.87048 -28.08277 -27.33709 -25.54750 -24.06410 -22.27378 -21.91851 -21.11677 -20.47883 -19.91956 -18.39409 -18.06225 -17.71547 -17.27880 -16.97380 -16.68402 -16.34780 -16.26806 -15.81851 -15.34553 -15.22561 -15.13135 -14.69036 -14.15218 -14.10218 -14.08250 -13.70317 -13.56280 -13.49373 -13.43990 -13.10443 -13.03282 -12.97028 -12.87724 -12.68359 -12.43576 -12.38196 -12.35976 -12.11723 -11.79186 -11.64238 -11.50534 -10.94034 -10.65461 -10.35248 -10.00661 -9.75857 -9.30761 -8.46428 -5.94726 1.38282 1.42452 1.49422 1.54455 1.59700 2.06584 2.29722 2.81331 2.95087 3.21209 3.38611 3.48090 3.64615 3.85014 4.01292 4.05695 4.09413 4.14007 4.25703 4.26184 4.29870 4.34147 4.38198 4.52110 4.61448 4.66473 4.74751 4.79241 4.82337 4.85018 4.90887 4.94364 5.01578 5.09881 5.21061 5.29498 5.33055 5.41742 5.90000 6.11023 6.16165 6.34825 6.44419 6.61249 7.06796 7.13697 7.57495 8.13432 8.70721 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.046341 B = 0.001824 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.074998 B =15343.845984 C =15464.284046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.175 4.175 4 O -0.397 6.397 5 C 0.056 3.944 6 C 0.517 3.483 7 O -0.582 6.582 8 N -0.616 5.616 9 C 0.099 3.901 10 C -0.159 4.159 11 C 0.085 3.915 12 H 0.114 0.886 13 N -0.680 5.680 14 C 0.070 3.930 15 C 0.435 3.565 16 O -0.627 6.627 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.269 1.269 25 H -0.274 1.274 26 C 0.117 3.883 27 H 0.048 0.952 28 H 0.094 0.906 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.347 0.653 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.398 0.602 44 H 0.278 0.722 45 H 0.048 0.952 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.729 9.152 -22.478 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 C -0.233 4.233 4 O -0.317 6.317 5 C -0.023 4.023 6 C 0.307 3.693 7 O -0.461 6.461 8 N -0.351 5.351 9 C -0.023 4.023 10 C -0.199 4.199 11 C -0.025 4.025 12 H 0.132 0.868 13 N -0.312 5.312 14 C -0.062 4.062 15 C 0.222 3.778 16 O -0.514 6.514 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.007 4.007 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.167 0.833 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.232 0.768 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.631 9.312 -20.834 28.838 hybrid contribution 1.345 -0.004 0.145 1.353 sum -16.285 9.308 -20.690 27.927 Atomic orbital electron populations 1.21898 0.93178 1.02682 1.03037 1.22429 0.95577 0.92898 0.87543 1.22318 1.01762 0.96224 1.02958 1.88045 1.35578 1.70388 1.37648 1.22297 0.88204 0.98103 0.93737 1.20745 0.79696 0.78304 0.90568 1.90719 1.53221 1.61965 1.40206 1.48503 1.20122 1.51838 1.14677 1.22650 0.86457 1.04298 0.88855 1.23557 0.97481 1.00857 0.97965 1.22607 0.90191 1.00947 0.88802 0.86837 1.59857 1.18349 1.07425 1.45533 1.21549 0.91834 0.97639 0.95194 1.20988 0.83658 0.83811 0.89294 1.90508 1.76162 1.37290 1.47438 1.41908 1.23682 1.29454 1.25861 1.19650 1.06043 1.15161 1.05654 0.90545 1.25991 0.99243 0.94958 1.00872 1.69662 1.31799 1.17690 1.36715 0.84957 0.77396 0.78427 0.77733 1.19844 1.19392 1.19927 1.21786 0.95114 0.95880 0.87931 0.93238 0.88690 0.92420 0.89426 0.93374 0.92090 0.89409 0.87786 0.86984 0.88080 0.87774 0.86976 0.90850 0.83277 0.87511 0.90332 0.76807 0.91286 0.93312 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.56 71.98 0.69 -1.08 16 2 C 0.07 0.90 3.34 30.59 0.10 1.00 16 3 C -0.18 -1.87 9.53 71.98 0.69 -1.18 16 4 O -0.40 -8.38 9.52 -129.94 -1.24 -9.62 16 5 C 0.06 0.85 5.23 71.24 0.37 1.22 16 6 C 0.52 12.88 7.93 87.66 0.69 13.58 16 7 O -0.58 -21.48 16.83 16.02 0.27 -21.21 16 8 N -0.62 -12.43 3.33 -811.80 -2.70 -15.13 16 9 C 0.10 1.00 6.69 86.86 0.58 1.58 16 10 C -0.16 -2.10 6.67 31.99 0.21 -1.89 16 11 C 0.09 1.72 3.28 46.10 0.15 1.87 16 12 H 0.11 1.92 7.82 -2.39 -0.02 1.90 16 13 N -0.68 -20.03 5.93 -489.43 -2.90 -22.93 16 14 C 0.07 2.17 6.03 85.56 0.52 2.69 16 15 C 0.43 20.13 7.82 87.66 0.69 20.82 16 16 O -0.63 -34.73 15.78 -3.06 -0.05 -34.77 16 17 N -0.57 -28.65 5.29 -306.97 -1.62 -30.27 16 18 C -0.34 -18.93 9.68 84.04 0.81 -18.12 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 21 N -0.92 -48.64 13.05 21.67 0.28 -48.36 16 22 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 C 0.12 2.89 6.62 86.73 0.57 3.46 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.61 7.79 -2.38 -0.02 0.59 16 31 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.59 7.87 -2.39 -0.02 0.57 16 33 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 1.01 7.58 -2.38 -0.02 1.00 16 35 H 0.11 0.93 8.08 -2.39 -0.02 0.92 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.56 16 37 H 0.10 0.54 7.48 -2.38 -0.02 0.52 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.14 7.77 -2.39 -0.02 1.12 16 40 H 0.35 10.95 7.91 -89.69 -0.71 10.24 16 41 H 0.11 2.96 8.08 -2.38 -0.02 2.94 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.40 18.65 7.90 -92.71 -0.73 17.92 16 44 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 45 H 0.05 1.51 8.03 -2.39 -0.02 1.49 16 46 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -80.93 383.52 0.16 -80.77 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.45 Total: 32.91 kcal Atomic # 6 Polarization: 17.32 SS G_CDS: 6.55 Total: 23.87 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -6.94 Total: -116.69 kcal Atomic # 8 Polarization: -64.58 SS G_CDS: -1.02 Total: -65.60 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -80.93 0.16 -80.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181386708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.054 kcal (2) G-P(sol) polarization free energy of solvation -80.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds