Wall clock time and date at job start Tue Mar 31 2020 04:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99812 * 2 1 4 4 H 1.08998 * 109.47164 * 329.99225 * 3 2 1 5 5 C 1.52998 * 109.47523 * 89.99831 * 3 2 1 6 6 C 1.53004 * 109.46927 * 209.99836 * 3 2 1 7 7 C 1.50700 * 109.47208 * 64.99690 * 6 3 2 8 8 O 1.21283 * 119.99803 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99675 * 180.27843 * 7 6 3 10 10 C 1.47016 * 125.64953 * 359.74753 * 9 7 6 11 11 C 1.54324 * 107.26889 * 181.02636 * 10 9 7 12 12 C 1.55156 * 102.94413 * 22.19488 * 11 10 9 13 13 H 1.08994 * 111.00577 * 82.61084 * 12 11 10 14 14 N 1.46906 * 111.00307 * 206.42433 * 12 11 10 15 15 C 1.46903 * 110.99935 * 273.54482 * 14 12 11 16 16 C 1.50702 * 109.46758 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00097 * 359.97438 * 16 15 14 18 18 N 1.34778 * 119.99405 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99322 * 179.97438 * 18 16 15 20 20 H 1.07998 * 120.00263 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99319 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00351 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99670 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46703 * 90.00111 * 23 21 19 25 25 H 1.48497 * 109.46929 * 209.99960 * 23 21 19 26 26 H 1.48494 * 109.47105 * 330.00448 * 23 21 19 27 27 C 1.47426 * 125.64311 * 179.44245 * 9 7 6 28 28 H 1.09003 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47561 * 300.00488 * 1 2 3 30 30 H 1.08999 * 109.46805 * 60.00571 * 1 2 3 31 31 H 1.09005 * 109.47209 * 59.99239 * 5 3 2 32 32 H 1.08991 * 109.47437 * 179.97438 * 5 3 2 33 33 H 1.09004 * 109.46778 * 300.00176 * 5 3 2 34 34 H 1.09009 * 109.46730 * 304.99597 * 6 3 2 35 35 H 1.08998 * 109.46846 * 185.00141 * 6 3 2 36 36 H 1.09004 * 109.88101 * 300.43815 * 10 9 7 37 37 H 1.08996 * 109.88464 * 61.60840 * 10 9 7 38 38 H 1.09003 * 110.72012 * 140.55453 * 11 10 9 39 39 H 1.09002 * 110.72222 * 263.64824 * 11 10 9 40 40 H 1.00903 * 110.99548 * 37.49739 * 14 12 11 41 41 H 1.09000 * 109.46897 * 300.00006 * 15 14 12 42 42 H 1.08994 * 109.47073 * 60.00091 * 15 14 12 43 43 H 0.96994 * 120.00251 * 359.97438 * 18 16 15 44 44 H 0.97007 * 119.99805 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.36638 * 274.74255 * 27 9 7 46 46 H 1.09000 * 110.36899 * 37.07072 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2176 1.7715 1.4424 6 6 3.3589 1.2633 -0.7212 7 6 3.1417 0.9235 -2.1733 8 8 2.0187 0.7333 -2.5901 9 7 4.1959 0.8250 -3.0073 10 6 5.6039 1.0280 -2.6362 11 6 6.4465 0.8384 -3.9151 12 6 5.4199 1.0969 -5.0493 13 1 5.3041 2.1645 -5.2356 14 7 5.8037 0.3894 -6.2783 15 6 6.7304 1.1967 -7.0829 16 6 7.1003 0.4403 -8.3328 17 8 6.6378 -0.6629 -8.5332 18 7 7.9450 0.9898 -9.2278 19 6 8.2819 0.3014 -10.3645 20 1 7.8708 -0.6813 -10.5426 21 6 9.1524 0.8681 -11.2875 22 7 9.6530 2.0636 -11.0705 23 14 9.6121 -0.0700 -12.8361 24 1 8.6479 0.2568 -13.9173 25 1 10.9816 0.3163 -13.2607 26 1 9.5719 -1.5288 -12.5614 27 6 4.1284 0.4895 -4.4413 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 2.8828 1.0776 1.9564 32 1 2.6613 2.7670 1.4424 33 1 1.2567 1.8015 1.9562 34 1 3.9931 0.5052 -0.2616 35 1 3.8427 2.2370 -0.6443 36 1 5.7429 2.0366 -2.2469 37 1 5.8989 0.2947 -1.8858 38 1 7.2565 1.5668 -3.9548 39 1 6.8397 -0.1767 -3.9710 40 1 6.2010 -0.5136 -6.0665 41 1 6.2505 2.1365 -7.3560 42 1 7.6299 1.4031 -6.5031 43 1 8.3145 1.8722 -9.0676 44 1 10.2604 2.4593 -11.7151 45 1 4.1143 -0.5919 -4.5776 46 1 3.2468 0.9416 -4.8956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181534995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:36 Heat of formation + Delta-G solvation = -115.917337 kcal Electronic energy + Delta-G solvation = -25689.488238 eV Core-core repulsion = 21807.148753 eV Total energy + Delta-G solvation = -3882.339485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35511 -38.80288 -38.17076 -37.37530 -34.75790 -33.81839 -33.15178 -31.27779 -30.69055 -29.37656 -28.07027 -26.78922 -25.96092 -24.00635 -23.31543 -21.79627 -20.93094 -19.43932 -19.27278 -17.93908 -17.39549 -17.21381 -16.48257 -16.15422 -15.71418 -15.40319 -15.25158 -14.81383 -14.53403 -14.40716 -14.02050 -13.72517 -13.61350 -13.45482 -13.09190 -12.94298 -12.85555 -12.75903 -12.47245 -12.30218 -12.17566 -12.00251 -11.70911 -11.64331 -11.49008 -11.33879 -11.06207 -11.04409 -10.93809 -10.40417 -10.23391 -9.97433 -9.82022 -9.52697 -8.80709 -8.49772 -8.11512 -7.98049 -6.43487 -3.84293 2.52423 2.75103 3.17177 3.25976 3.31820 3.52347 3.87940 4.01106 4.16282 4.24853 4.42251 4.46529 4.61448 4.75011 4.81200 4.93290 5.05796 5.08613 5.10475 5.12142 5.18751 5.20980 5.24664 5.29292 5.30776 5.33930 5.54770 5.56979 5.58258 5.71118 5.75280 5.76772 5.89195 5.91719 5.94652 6.09571 6.24774 6.97394 7.11860 7.36270 7.53822 7.56169 8.04258 8.04741 8.59098 9.16152 9.52044 10.03320 10.74148 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.044703 B = 0.001911 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.203056 B =14645.965910 C =15002.875047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.099 3.901 4 H 0.068 0.932 5 C -0.175 4.175 6 C -0.136 4.136 7 C 0.531 3.469 8 O -0.532 6.532 9 N -0.622 5.622 10 C 0.105 3.895 11 C -0.169 4.169 12 C 0.079 3.921 13 H 0.094 0.906 14 N -0.656 5.656 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.117 3.883 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.353 0.647 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.074 0.926 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.107 3.772 24.948 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.232 4.232 6 C -0.175 4.175 7 C 0.320 3.680 8 O -0.408 6.408 9 N -0.358 5.358 10 C -0.019 4.019 11 C -0.208 4.208 12 C -0.033 4.033 13 H 0.113 0.887 14 N -0.288 5.288 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.006 4.006 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.399 3.063 24.147 26.468 hybrid contribution 1.352 0.370 -0.141 1.409 sum -9.047 3.433 24.005 25.882 Atomic orbital electron populations 1.22700 0.80946 1.02520 0.99713 1.87889 1.19876 1.26894 1.94947 1.21793 0.93547 0.85957 0.94633 0.91361 1.22299 1.02646 1.01641 0.96641 1.21832 0.99093 1.04304 0.92314 1.20174 0.83513 0.76903 0.87443 1.90708 1.22722 1.49793 1.77602 1.48505 1.06525 1.70196 1.10585 1.21968 0.80842 1.01184 0.97895 1.23467 0.98816 1.03392 0.95164 1.22798 0.93332 0.99001 0.88164 0.88740 1.59927 1.46071 1.05963 1.16826 1.21686 0.94680 0.97269 0.94385 1.19787 0.83789 0.88061 0.85874 1.90534 1.56764 1.21239 1.78139 1.41856 1.40475 1.18704 1.18926 1.19710 1.24779 1.02102 0.96321 0.87888 1.25266 0.96795 0.96174 0.99706 1.69611 1.32294 1.15178 1.37220 0.85851 0.77614 0.79707 0.81080 1.20371 1.20942 1.19417 1.22170 0.98633 1.00743 0.79062 0.89978 0.94675 0.93504 0.91639 0.91464 0.92131 0.88093 0.87779 0.91305 0.91347 0.89759 0.90085 0.82586 0.89475 0.93632 0.77457 0.91867 0.90792 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.82 101.05 1.09 1.43 16 2 O -0.38 -4.21 9.58 -49.66 -0.48 -4.68 16 3 C 0.10 0.86 2.27 -26.73 -0.06 0.80 16 4 H 0.07 0.63 7.60 -51.93 -0.39 0.24 16 5 C -0.17 -1.04 9.53 37.16 0.35 -0.69 16 6 C -0.14 -1.08 4.60 -27.88 -0.13 -1.21 16 7 C 0.53 6.33 7.73 -10.98 -0.08 6.24 16 8 O -0.53 -8.40 15.67 -8.88 -0.14 -8.54 16 9 N -0.62 -6.74 3.32 -170.38 -0.57 -7.31 16 10 C 0.10 0.81 6.48 -3.07 -0.02 0.79 16 11 C -0.17 -1.49 6.53 -24.90 -0.16 -1.65 16 12 C 0.08 0.91 3.33 -65.44 -0.22 0.69 16 13 H 0.09 1.05 7.92 -51.93 -0.41 0.64 16 14 N -0.66 -10.03 6.00 -105.60 -0.63 -10.67 16 15 C 0.05 0.87 6.04 -4.97 -0.03 0.84 16 16 C 0.44 10.16 7.82 -10.98 -0.09 10.07 16 17 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 18 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 23 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 C 0.12 1.45 6.61 -2.41 -0.02 1.44 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.24 7.87 -51.93 -0.41 -0.17 16 30 H 0.05 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.35 7.87 -51.93 -0.41 -0.06 16 34 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.74 7.81 -51.93 -0.41 0.34 16 40 H 0.35 5.56 8.01 -39.29 -0.31 5.25 16 41 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 44 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.15 8.03 -51.93 -0.42 0.74 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -34.01 382.58 -7.58 -41.59 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.66 Total: 10.35 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 0.40 Total: 10.81 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.53 Total: -55.64 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.53 Total: -28.80 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.01 -7.58 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181534995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.328 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds