Wall clock time and date at job start Tue Mar 31 2020 04:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42892 * 109.47415 * 2 1 4 4 C 1.42898 * 114.00171 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47226 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46951 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99926 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99931 * 180.02562 * 6 5 4 9 9 C 1.47425 * 125.64767 * 359.69212 * 8 6 5 10 10 C 1.54910 * 104.83231 * 156.13676 * 9 8 6 11 11 C 1.55160 * 101.58122 * 37.00939 * 10 9 8 12 12 H 1.09003 * 110.87062 * 82.93498 * 11 10 9 13 13 N 1.46897 * 110.71782 * 206.13435 * 11 10 9 14 14 C 1.46908 * 111.00028 * 268.51891 * 13 11 10 15 15 C 1.50698 * 109.47222 * 180.02562 * 14 13 11 16 16 O 1.21288 * 119.99773 * 0.02562 * 15 14 13 17 17 N 1.34767 * 120.00137 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00550 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99375 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00496 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00119 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47373 * 90.00088 * 22 20 18 24 24 H 1.48499 * 109.47397 * 210.00288 * 22 20 18 25 25 H 1.48498 * 109.47232 * 330.00244 * 22 20 18 26 26 C 1.47026 * 125.65100 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47470 * 300.00678 * 1 2 3 29 29 H 1.08997 * 109.47069 * 60.00227 * 1 2 3 30 30 H 1.08997 * 109.47115 * 239.98963 * 2 1 3 31 31 H 1.09005 * 109.46915 * 119.99497 * 2 1 3 32 32 H 1.09000 * 109.47460 * 59.99304 * 4 3 2 33 33 H 1.09005 * 109.47130 * 299.99683 * 4 3 2 34 34 H 1.09000 * 109.46739 * 60.00498 * 5 4 3 35 35 H 1.08989 * 109.47268 * 299.99793 * 5 4 3 36 36 H 1.09001 * 110.36478 * 274.97629 * 9 8 6 37 37 H 1.08998 * 110.36859 * 37.30006 * 9 8 6 38 38 H 1.08991 * 111.00552 * 278.93287 * 10 9 8 39 39 H 1.09004 * 111.03615 * 155.09334 * 10 9 8 40 40 H 1.00900 * 111.00611 * 32.47396 * 13 11 10 41 41 H 1.09003 * 109.46989 * 300.00361 * 14 13 11 42 42 H 1.09004 * 109.47061 * 60.00160 * 14 13 11 43 43 H 0.97008 * 120.00320 * 359.97438 * 17 15 14 44 44 H 0.96997 * 120.00064 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.87531 * 300.21113 * 26 8 6 46 46 H 1.09000 * 109.87938 * 61.37366 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 6 5.3278 3.0571 -0.0012 7 8 6.0151 2.0580 -0.0012 8 7 5.9074 4.2738 -0.0011 9 6 5.1955 5.5648 -0.0075 10 6 6.2002 6.5748 0.6009 11 6 7.5453 6.0648 0.0194 12 1 7.7023 6.4475 -0.9891 13 7 8.6645 6.4375 0.8947 14 6 9.2360 7.7311 0.4968 15 6 10.3792 8.0790 1.4149 16 8 10.6878 7.3235 2.3122 17 7 11.0585 9.2296 1.2391 18 6 12.0989 9.5459 2.0740 19 1 12.3743 8.8728 2.8724 20 6 12.7997 10.7319 1.8923 21 7 12.4655 11.5502 0.9198 22 14 14.2167 11.1632 3.0304 23 1 15.4819 10.6204 2.4735 24 1 14.3225 12.6394 3.1518 25 1 13.9725 10.5726 4.3708 26 6 7.3546 4.5336 -0.0016 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8333 0.9765 -0.8907 33 1 3.8340 0.9763 0.8892 34 1 3.4231 3.4220 0.8889 35 1 3.4224 3.4215 -0.8911 36 1 4.9396 5.8518 -1.0274 37 1 4.2975 5.5058 0.6075 38 1 6.1991 6.5194 1.6894 39 1 5.9882 7.5892 0.2632 40 1 8.3781 6.4511 1.8621 41 1 9.6003 7.6673 -0.5286 42 1 8.4689 8.5028 0.5624 43 1 10.8119 9.8336 0.5212 44 1 12.9545 12.3783 0.7933 45 1 7.8108 4.0912 0.8840 46 1 7.8058 4.1159 -0.9016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181550919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:02 Heat of formation + Delta-G solvation = -119.033344 kcal Electronic energy + Delta-G solvation = -25137.633551 eV Core-core repulsion = 21255.158947 eV Total energy + Delta-G solvation = -3882.474605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38426 -38.70826 -38.24238 -37.62770 -34.79849 -33.82718 -32.89256 -31.30761 -30.98979 -30.33063 -28.91001 -26.29899 -24.54942 -23.62728 -23.17480 -22.90626 -20.93390 -19.40685 -19.30857 -17.95468 -17.77398 -16.97004 -16.54303 -16.43632 -16.05054 -15.55134 -15.16916 -14.95648 -14.61842 -14.53582 -14.15518 -13.89722 -13.68871 -13.65876 -13.15836 -12.93668 -12.68299 -12.59812 -12.53126 -12.27059 -12.16653 -12.07689 -11.68331 -11.50419 -11.49153 -11.43422 -11.40235 -11.06169 -10.99097 -10.40744 -10.23873 -10.10836 -9.97611 -9.53188 -8.87422 -8.52008 -8.13014 -7.98587 -6.43991 -3.84859 2.38830 2.54052 3.16812 3.25718 3.31413 3.37237 3.87333 3.99178 4.18822 4.25207 4.37234 4.53929 4.61317 4.66016 4.70339 4.83076 4.88154 4.98432 5.02931 5.08840 5.11601 5.17501 5.22156 5.24667 5.31719 5.41382 5.43401 5.51447 5.55206 5.69719 5.70603 5.70982 5.82621 5.90168 5.93018 6.05119 6.23551 6.79261 7.11500 7.25278 7.53315 7.54097 7.90610 8.03833 8.58499 9.15685 9.51457 10.02728 10.73653 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.051757 B = 0.001717 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.861775 B =16302.379525 C =16499.829371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.394 6.394 4 C 0.078 3.922 5 C -0.134 4.134 6 C 0.532 3.468 7 O -0.541 6.541 8 N -0.618 5.618 9 C 0.101 3.899 10 C -0.168 4.168 11 C 0.080 3.920 12 H 0.095 0.905 13 N -0.658 5.658 14 C 0.052 3.948 15 C 0.439 3.561 16 O -0.583 6.583 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.115 3.885 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.354 0.646 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.081 0.919 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.186 -13.535 -5.795 27.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.314 6.314 4 C 0.001 3.999 5 C -0.174 4.174 6 C 0.321 3.679 7 O -0.418 6.418 8 N -0.353 5.353 9 C -0.022 4.022 10 C -0.207 4.207 11 C -0.032 4.032 12 H 0.113 0.887 13 N -0.290 5.290 14 C -0.080 4.080 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.008 4.008 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.175 0.825 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.186 -14.672 -5.574 27.176 hybrid contribution 0.053 1.235 0.311 1.275 sum -22.132 -13.437 -5.263 26.421 Atomic orbital electron populations 1.21750 0.93657 1.02309 1.03141 1.22454 0.95508 0.83493 1.00353 1.87795 1.21106 1.26870 1.95601 1.22110 0.80671 0.95290 1.01851 1.21435 0.92199 0.98189 1.05575 1.20020 0.89895 0.81763 0.76270 1.90737 1.65393 1.35582 1.50110 1.48476 1.08133 1.05464 1.73204 1.22322 0.95917 0.82788 1.01204 1.23598 0.96238 0.99243 1.01655 1.22613 0.88577 0.93894 0.98130 0.88736 1.59945 1.30916 1.30907 1.07234 1.21703 0.96459 0.89840 1.00037 1.19782 0.86291 0.83605 0.87867 1.90535 1.69941 1.50732 1.35492 1.41854 1.29628 1.18171 1.30268 1.19712 1.07751 1.04348 1.11173 0.87901 1.25256 0.99287 0.95804 0.97509 1.69608 1.41709 1.11944 1.31024 0.85855 0.80760 0.77400 0.80265 1.20365 1.20932 1.19419 1.21941 0.79749 0.95705 1.03368 0.91047 0.91823 0.91841 0.93267 0.93242 0.92371 0.92325 0.88059 0.88077 0.90880 0.90371 0.90030 0.89456 0.82522 0.89441 0.93623 0.77456 0.91860 0.90077 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.15 0.38 -0.44 16 2 C 0.06 0.41 6.66 37.15 0.25 0.66 16 3 O -0.39 -3.64 10.34 -35.23 -0.36 -4.00 16 4 C 0.08 0.71 5.23 37.16 0.19 0.91 16 5 C -0.13 -1.11 5.07 -27.88 -0.14 -1.25 16 6 C 0.53 6.14 7.85 -10.98 -0.09 6.06 16 7 O -0.54 -8.36 16.31 5.56 0.09 -8.27 16 8 N -0.62 -6.47 3.33 -170.52 -0.57 -7.04 16 9 C 0.10 0.74 6.69 -2.53 -0.02 0.72 16 10 C -0.17 -1.43 6.67 -24.58 -0.16 -1.59 16 11 C 0.08 0.88 3.28 -65.88 -0.22 0.66 16 12 H 0.09 0.96 7.82 -51.93 -0.41 0.55 16 13 N -0.66 -9.92 5.93 -106.05 -0.63 -10.55 16 14 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 15 C 0.44 10.10 7.82 -10.99 -0.09 10.01 16 16 O -0.58 -15.64 15.78 5.55 0.09 -15.55 16 17 N -0.56 -13.97 5.29 -10.97 -0.06 -14.03 16 18 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 22 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 C 0.12 1.39 6.62 -3.07 -0.02 1.37 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 34 H 0.10 0.71 7.85 -51.93 -0.41 0.30 16 35 H 0.10 0.68 8.14 -51.94 -0.42 0.26 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.45 7.48 -51.93 -0.39 0.06 16 38 H 0.08 0.75 7.77 -51.93 -0.40 0.34 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.35 5.56 7.91 -39.29 -0.31 5.25 16 41 H 0.09 1.32 8.08 -51.93 -0.42 0.90 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.08 1.15 8.03 -51.93 -0.42 0.73 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -33.48 384.21 -7.78 -41.26 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.66 Total: 9.98 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -0.18 Total: 10.01 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.53 Total: -55.09 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.19 Total: -27.82 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.48 -7.78 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181550919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.770 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds