Wall clock time and date at job start Tue Mar 31 2020 04:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42892 * 109.47415 * 2 1 4 4 C 1.42898 * 114.00171 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47226 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46951 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99926 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99931 * 180.02562 * 6 5 4 9 9 C 1.47425 * 125.64767 * 359.69212 * 8 6 5 10 10 C 1.54910 * 104.83231 * 156.13676 * 9 8 6 11 11 C 1.55160 * 101.58122 * 37.00939 * 10 9 8 12 12 H 1.09003 * 110.87062 * 82.93498 * 11 10 9 13 13 N 1.46897 * 110.71782 * 206.13435 * 11 10 9 14 14 C 1.46908 * 111.00028 * 268.51891 * 13 11 10 15 15 C 1.50698 * 109.47222 * 180.02562 * 14 13 11 16 16 O 1.21288 * 119.99773 * 0.02562 * 15 14 13 17 17 N 1.34767 * 120.00137 * 180.02562 * 15 14 13 18 18 C 1.37098 * 120.00550 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99375 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00496 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00077 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00119 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47373 * 90.00088 * 22 20 18 24 24 H 1.48499 * 109.47397 * 210.00288 * 22 20 18 25 25 H 1.48498 * 109.47232 * 330.00244 * 22 20 18 26 26 C 1.47026 * 125.65100 * 180.02562 * 8 6 5 27 27 H 1.09001 * 109.47599 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47470 * 300.00678 * 1 2 3 29 29 H 1.08997 * 109.47069 * 60.00227 * 1 2 3 30 30 H 1.08997 * 109.47115 * 239.98963 * 2 1 3 31 31 H 1.09005 * 109.46915 * 119.99497 * 2 1 3 32 32 H 1.09000 * 109.47460 * 59.99304 * 4 3 2 33 33 H 1.09005 * 109.47130 * 299.99683 * 4 3 2 34 34 H 1.09000 * 109.46739 * 60.00498 * 5 4 3 35 35 H 1.08989 * 109.47268 * 299.99793 * 5 4 3 36 36 H 1.09001 * 110.36478 * 274.97629 * 9 8 6 37 37 H 1.08998 * 110.36859 * 37.30006 * 9 8 6 38 38 H 1.08991 * 111.00552 * 278.93287 * 10 9 8 39 39 H 1.09004 * 111.03615 * 155.09334 * 10 9 8 40 40 H 1.00900 * 111.00611 * 32.47396 * 13 11 10 41 41 H 1.09003 * 109.46989 * 300.00361 * 14 13 11 42 42 H 1.09004 * 109.47061 * 60.00160 * 14 13 11 43 43 H 0.97008 * 120.00320 * 359.97438 * 17 15 14 44 44 H 0.96997 * 120.00064 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.87531 * 300.21113 * 26 8 6 46 46 H 1.09000 * 109.87938 * 61.37366 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 6 5.3278 3.0571 -0.0012 7 8 6.0151 2.0580 -0.0012 8 7 5.9074 4.2738 -0.0011 9 6 5.1955 5.5648 -0.0075 10 6 6.2002 6.5748 0.6009 11 6 7.5453 6.0648 0.0194 12 1 7.7023 6.4475 -0.9891 13 7 8.6645 6.4375 0.8947 14 6 9.2360 7.7311 0.4968 15 6 10.3792 8.0790 1.4149 16 8 10.6878 7.3235 2.3122 17 7 11.0585 9.2296 1.2391 18 6 12.0989 9.5459 2.0740 19 1 12.3743 8.8728 2.8724 20 6 12.7997 10.7319 1.8923 21 7 12.4655 11.5502 0.9198 22 14 14.2167 11.1632 3.0304 23 1 15.4819 10.6204 2.4735 24 1 14.3225 12.6394 3.1518 25 1 13.9725 10.5726 4.3708 26 6 7.3546 4.5336 -0.0016 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8333 0.9765 -0.8907 33 1 3.8340 0.9763 0.8892 34 1 3.4231 3.4220 0.8889 35 1 3.4224 3.4215 -0.8911 36 1 4.9396 5.8518 -1.0274 37 1 4.2975 5.5058 0.6075 38 1 6.1991 6.5194 1.6894 39 1 5.9882 7.5892 0.2632 40 1 8.3781 6.4511 1.8621 41 1 9.6003 7.6673 -0.5286 42 1 8.4689 8.5028 0.5624 43 1 10.8119 9.8336 0.5212 44 1 12.9545 12.3783 0.7933 45 1 7.8108 4.0912 0.8840 46 1 7.8058 4.1159 -0.9016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181550919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:01 Heat of formation + Delta-G solvation = -144.899167 kcal Electronic energy + Delta-G solvation = -25138.755178 eV Core-core repulsion = 21255.158947 eV Total energy + Delta-G solvation = -3883.596231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.26081 -40.17223 -39.22061 -38.62023 -36.19781 -35.55793 -33.56912 -33.25596 -31.85044 -31.02885 -29.85568 -27.82424 -25.92103 -24.77696 -23.69003 -23.61288 -21.84359 -21.09559 -20.19752 -19.91756 -18.57913 -17.78991 -17.69453 -17.28437 -17.18356 -16.76278 -16.34812 -16.19636 -15.96933 -15.60003 -15.33148 -15.15712 -14.76946 -14.64231 -14.12289 -14.05805 -13.72063 -13.57266 -13.47647 -13.21911 -13.12625 -12.98867 -12.95633 -12.75832 -12.63410 -12.43124 -12.36873 -12.11655 -12.06292 -12.02601 -11.75692 -11.50360 -11.05944 -10.62578 -10.35123 -10.00582 -9.74113 -9.30797 -8.46286 -5.94711 1.38351 1.42564 1.51748 1.54678 1.73874 2.06648 2.29850 2.71002 2.93030 3.21394 3.40233 3.52101 3.65825 3.81826 3.97960 4.04050 4.09958 4.16577 4.26110 4.33868 4.36536 4.38336 4.43783 4.49293 4.52289 4.61394 4.65254 4.74935 4.75379 4.84059 4.86488 4.91014 5.02516 5.03904 5.10540 5.23037 5.27971 5.41793 5.90022 6.10965 6.15916 6.34929 6.43943 6.61236 7.03673 7.13757 7.57552 8.13362 8.70904 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.051757 B = 0.001717 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.861775 B =16302.379525 C =16499.829371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.079 3.921 5 C -0.122 4.122 6 C 0.526 3.474 7 O -0.591 6.591 8 N -0.616 5.616 9 C 0.101 3.899 10 C -0.160 4.160 11 C 0.084 3.916 12 H 0.112 0.888 13 N -0.678 5.678 14 C 0.070 3.930 15 C 0.435 3.565 16 O -0.627 6.627 17 N -0.572 5.572 18 C -0.336 4.336 19 H 0.077 0.923 20 C -0.010 4.010 21 N -0.918 5.918 22 Si 0.991 3.009 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.116 3.884 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.347 0.653 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.398 0.602 44 H 0.278 0.722 45 H 0.051 0.949 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.165 -12.352 -6.723 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.323 6.323 4 C 0.002 3.998 5 C -0.162 4.162 6 C 0.316 3.684 7 O -0.472 6.472 8 N -0.350 5.350 9 C -0.021 4.021 10 C -0.199 4.199 11 C -0.027 4.027 12 H 0.130 0.870 13 N -0.310 5.310 14 C -0.062 4.062 15 C 0.223 3.777 16 O -0.514 6.514 17 N -0.209 5.209 18 C -0.465 4.465 19 H 0.095 0.905 20 C -0.210 4.210 21 N -0.559 5.559 22 Si 0.814 3.186 23 H -0.198 1.198 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.008 4.008 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.128 0.872 40 H 0.167 0.833 41 H 0.125 0.875 42 H 0.095 0.905 43 H 0.232 0.768 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.208 -13.452 -6.536 28.455 hybrid contribution 0.643 0.794 0.594 1.182 sum -23.565 -12.658 -5.941 27.401 Atomic orbital electron populations 1.21759 0.92341 1.03443 1.02957 1.22675 0.96614 0.82718 1.00757 1.87773 1.20749 1.28167 1.95618 1.22034 0.80848 0.95988 1.00913 1.21390 0.89445 0.97824 1.07492 1.20650 0.91150 0.81307 0.75253 1.90713 1.66699 1.37323 1.52469 1.48559 1.07631 1.06528 1.72274 1.22591 0.95943 0.80447 1.03125 1.23553 0.94544 1.00659 1.01163 1.22618 0.88773 0.92963 0.98310 0.86996 1.59870 1.33312 1.30338 1.07517 1.21548 0.94588 0.91357 0.98750 1.20970 0.86865 0.82152 0.87740 1.90505 1.71400 1.51828 1.37625 1.41910 1.29625 1.19087 1.30277 1.19653 1.09869 1.05014 1.11994 0.90523 1.25981 1.01111 0.95167 0.98734 1.69658 1.42424 1.12168 1.31653 0.84964 0.77807 0.77685 0.78103 1.19817 1.19417 1.19897 1.21786 0.80985 0.96502 1.01502 0.89308 0.92051 0.91912 0.92793 0.92991 0.93219 0.93560 0.86186 0.85751 0.88401 0.87973 0.90866 0.87236 0.83287 0.87528 0.90465 0.76827 0.91286 0.93082 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.28 71.98 0.74 -0.65 16 2 C 0.05 0.64 6.66 71.98 0.48 1.12 16 3 O -0.40 -6.95 10.34 -148.98 -1.54 -8.49 16 4 C 0.08 1.41 5.23 71.98 0.38 1.79 16 5 C -0.12 -1.78 5.07 29.85 0.15 -1.62 16 6 C 0.53 11.78 7.85 87.66 0.69 12.47 16 7 O -0.59 -18.85 16.31 -3.02 -0.05 -18.90 16 8 N -0.62 -12.01 3.33 -811.79 -2.70 -14.71 16 9 C 0.10 1.11 6.69 86.86 0.58 1.69 16 10 C -0.16 -2.21 6.67 31.99 0.21 -2.00 16 11 C 0.08 1.70 3.28 46.10 0.15 1.85 16 12 H 0.11 1.91 7.82 -2.39 -0.02 1.90 16 13 N -0.68 -19.90 5.93 -489.43 -2.90 -22.80 16 14 C 0.07 2.17 6.03 85.55 0.52 2.68 16 15 C 0.44 20.12 7.82 87.66 0.69 20.81 16 16 O -0.63 -34.58 15.78 -3.05 -0.05 -34.63 16 17 N -0.57 -28.64 5.29 -307.00 -1.62 -30.26 16 18 C -0.34 -18.92 9.68 84.04 0.81 -18.11 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.52 5.50 84.93 0.47 -0.06 16 21 N -0.92 -48.69 13.05 21.66 0.28 -48.40 16 22 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.12 2.78 6.62 86.73 0.57 3.35 16 27 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 33 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 34 H 0.12 1.33 7.85 -2.39 -0.02 1.31 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.71 7.48 -2.39 -0.02 0.69 16 38 H 0.07 1.18 7.77 -2.39 -0.02 1.16 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.35 10.90 7.91 -89.69 -0.71 10.19 16 41 H 0.11 2.96 8.08 -2.39 -0.02 2.94 16 42 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.40 18.68 7.90 -92.70 -0.73 17.94 16 44 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 45 H 0.05 1.52 8.03 -2.38 -0.02 1.50 16 46 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -75.27 384.21 -0.58 -75.85 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.46 Total: 34.36 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 6.44 Total: 23.31 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -6.94 Total: -116.18 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -1.64 Total: -62.03 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -75.27 -0.58 -75.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181550919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.049 kcal (2) G-P(sol) polarization free energy of solvation -75.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds