Wall clock time and date at job start Tue Mar 31 2020 04:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47106 * 2 1 4 4 O 1.42907 * 109.46992 * 239.99913 * 2 1 3 5 5 C 1.53003 * 109.47360 * 119.99917 * 2 1 3 6 6 C 1.50695 * 109.47079 * 59.99934 * 5 2 1 7 7 O 1.21278 * 120.00236 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99833 * 180.02562 * 6 5 2 9 9 C 1.47019 * 125.65061 * 359.97311 * 8 6 5 10 10 C 1.54322 * 107.27223 * 181.07843 * 9 8 6 11 11 C 1.55154 * 102.94204 * 22.19795 * 10 9 8 12 12 H 1.08999 * 111.00353 * 82.56825 * 11 10 9 13 13 N 1.46905 * 111.00511 * 206.42293 * 11 10 9 14 14 C 1.46905 * 110.99514 * 267.19338 * 13 11 10 15 15 C 1.50704 * 109.46854 * 179.97438 * 14 13 11 16 16 O 1.21292 * 119.99413 * 0.02562 * 15 14 13 17 17 N 1.34770 * 119.99976 * 180.02562 * 15 14 13 18 18 C 1.37100 * 119.99788 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99896 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99712 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00089 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99832 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47025 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46873 * 119.99989 * 22 20 18 25 25 H 1.48494 * 109.47459 * 240.00225 * 22 20 18 26 26 C 1.47426 * 125.64729 * 180.02562 * 8 6 5 27 27 H 1.08995 * 109.46781 * 299.99647 * 1 2 3 28 28 H 1.08992 * 109.47097 * 59.99988 * 1 2 3 29 29 H 1.08997 * 109.46645 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47345 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46847 * 299.99704 * 3 2 1 32 32 H 1.08997 * 109.47479 * 59.99888 * 3 2 1 33 33 H 0.96701 * 113.99543 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.46800 * 299.99852 * 5 2 1 35 35 H 1.08996 * 109.47130 * 180.02562 * 5 2 1 36 36 H 1.09001 * 109.88389 * 300.50344 * 9 8 6 37 37 H 1.09003 * 109.87977 * 61.66684 * 9 8 6 38 38 H 1.08999 * 110.71849 * 140.55494 * 10 9 8 39 39 H 1.08995 * 110.72403 * 263.65428 * 10 9 8 40 40 H 1.00897 * 110.99686 * 31.14471 * 13 11 10 41 41 H 1.09000 * 109.47399 * 300.00002 * 14 13 11 42 42 H 1.09002 * 109.47116 * 60.00238 * 14 13 11 43 43 H 0.96995 * 119.99996 * 0.02562 * 17 15 14 44 44 H 0.97003 * 119.99690 * 180.02562 * 21 20 18 45 45 H 1.08998 * 110.36718 * 274.68923 * 26 8 6 46 46 H 1.09005 * 110.36600 * 37.01484 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0401 -0.7212 1.2493 6 6 1.5378 -2.1420 1.2493 7 8 0.8409 -2.5389 0.3395 8 7 1.8630 -2.9717 2.2604 9 6 2.6965 -2.6234 3.4203 10 6 2.8173 -3.8894 4.2944 11 6 2.5150 -5.0341 3.2917 12 1 3.4039 -5.2958 2.7179 13 7 1.9723 -6.2108 3.9839 14 6 3.0431 -7.1498 4.3441 15 6 2.4497 -8.3411 5.0512 16 8 1.2525 -8.4019 5.2363 17 7 3.2492 -9.3386 5.4778 18 6 2.7093 -10.4221 6.1215 19 1 1.6434 -10.4763 6.2864 20 6 3.5336 -11.4508 6.5608 21 7 4.8306 -11.3850 6.3598 22 14 2.7980 -12.9274 7.4373 23 1 1.3257 -12.7609 7.5371 24 1 3.1053 -14.1616 6.6708 25 1 3.3780 -13.0337 8.8001 26 6 1.4428 -4.3792 2.3859 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 2.9704 -0.7115 -1.2331 34 1 1.6768 -0.2074 2.1392 35 1 3.1301 -0.7208 1.2494 36 1 3.6848 -2.3083 3.0855 37 1 2.2233 -1.8235 3.9899 38 1 3.8258 -3.9855 4.6966 39 1 2.0825 -3.8740 5.0993 40 1 1.4412 -5.9387 4.7975 41 1 3.5551 -7.4811 3.4407 42 1 3.7548 -6.6536 5.0039 43 1 4.2066 -9.2897 5.3300 44 1 5.4059 -12.1034 6.6661 45 1 0.4608 -4.4416 2.8548 46 1 1.4281 -4.8594 1.4074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182220265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:59 Heat of formation + Delta-G solvation = -147.122653 kcal Electronic energy + Delta-G solvation = -25925.119047 eV Core-core repulsion = 22041.426398 eV Total energy + Delta-G solvation = -3883.692649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33174 -40.22336 -39.37071 -38.02506 -36.19139 -35.54352 -33.64814 -33.27207 -31.81551 -30.27254 -29.07827 -28.17011 -27.50905 -25.61039 -24.06035 -22.02634 -21.47744 -21.08781 -20.23135 -19.92687 -18.36367 -17.77045 -17.59605 -17.27025 -16.86509 -16.37365 -16.22498 -15.82230 -15.69101 -15.60798 -15.19435 -15.12235 -14.61318 -14.14095 -14.10794 -13.87127 -13.79418 -13.49209 -13.22955 -13.18330 -13.09024 -12.99640 -12.86517 -12.73805 -12.64149 -12.41717 -12.38192 -12.34734 -12.11648 -11.75371 -11.65233 -11.51608 -11.06158 -10.55136 -10.35657 -10.01481 -9.63153 -9.30775 -8.47169 -5.95578 1.36493 1.42199 1.56048 1.69535 1.92592 2.05198 2.29649 2.91962 3.20318 3.32637 3.42372 3.55489 3.69371 3.75412 3.87686 4.03249 4.05457 4.22256 4.28658 4.31320 4.38177 4.50130 4.57633 4.57995 4.61111 4.70205 4.77330 4.81790 4.88209 4.92078 5.01272 5.05375 5.08534 5.11999 5.24415 5.34126 5.41437 5.47818 5.88520 6.09062 6.36455 6.57690 6.60152 6.98282 7.12804 7.25580 7.56373 8.11864 8.70300 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.045095 B = 0.001954 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.765155 B =14326.856366 C =14468.157764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.138 3.862 3 C -0.169 4.169 4 O -0.573 6.573 5 C -0.154 4.154 6 C 0.518 3.482 7 O -0.568 6.568 8 N -0.623 5.623 9 C 0.104 3.896 10 C -0.158 4.158 11 C 0.083 3.917 12 H 0.101 0.899 13 N -0.676 5.676 14 C 0.069 3.931 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.272 1.272 25 H -0.269 1.269 26 C 0.117 3.883 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.382 0.618 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.350 0.650 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.057 0.943 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 27.433 -6.499 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.097 3.903 3 C -0.227 4.227 4 O -0.380 6.380 5 C -0.194 4.194 6 C 0.308 3.692 7 O -0.446 6.446 8 N -0.358 5.358 9 C -0.018 4.018 10 C -0.197 4.197 11 C -0.028 4.028 12 H 0.119 0.881 13 N -0.308 5.308 14 C -0.063 4.063 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.197 1.197 25 H -0.194 1.194 26 C -0.007 4.007 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.230 0.770 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.097 0.903 40 H 0.170 0.830 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.231 0.769 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.859 26.709 -7.551 27.818 hybrid contribution 0.886 -0.733 1.090 1.585 sum 2.745 25.976 -6.461 26.908 Atomic orbital electron populations 1.22001 0.94106 1.02967 1.02204 1.21051 0.94541 0.91259 0.83447 1.22426 1.02471 0.94303 1.03475 1.86697 1.27200 1.79997 1.44129 1.22491 1.04315 0.90524 1.02039 1.20966 0.79882 0.88465 0.79856 1.90702 1.39512 1.77739 1.36685 1.48657 1.51974 1.11735 1.23415 1.22190 0.95928 0.97907 0.85747 1.23387 1.04498 0.93996 0.97850 1.22682 0.96392 0.88501 0.95232 0.88131 1.59808 1.24003 1.14675 1.32322 1.21541 0.93202 0.91245 1.00276 1.20931 0.87041 0.86075 0.83584 1.90504 1.17080 1.81297 1.62314 1.41923 1.09811 1.17853 1.51383 1.19691 0.94198 0.98074 1.34335 0.90434 1.26021 0.95594 1.01410 0.98231 1.69671 1.03810 1.35206 1.47311 0.84884 0.78105 0.77372 0.78052 1.19934 1.19742 1.19443 1.21933 0.97837 0.81397 0.99498 0.90027 0.92869 0.92661 0.90426 0.92257 0.89930 0.76964 0.85712 0.85846 0.88692 0.89210 0.87824 0.90267 0.83014 0.87901 0.90480 0.76860 0.91289 0.92466 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.52 71.98 0.61 -2.34 16 2 C 0.14 2.01 0.98 -10.79 -0.01 2.00 16 3 C -0.17 -1.33 8.81 71.98 0.63 -0.69 16 4 O -0.57 -11.35 11.88 -131.52 -1.56 -12.91 16 5 C -0.15 -1.74 4.14 29.85 0.12 -1.61 16 6 C 0.52 11.22 7.41 87.66 0.65 11.87 16 7 O -0.57 -18.23 13.21 14.44 0.19 -18.04 16 8 N -0.62 -11.99 3.33 -811.84 -2.70 -14.69 16 9 C 0.10 1.13 6.49 86.73 0.56 1.69 16 10 C -0.16 -2.18 6.54 31.78 0.21 -1.98 16 11 C 0.08 1.76 3.38 46.30 0.16 1.92 16 12 H 0.10 2.00 7.83 -2.39 -0.02 1.98 16 13 N -0.68 -20.08 6.04 -488.41 -2.95 -23.03 16 14 C 0.07 2.21 6.03 85.56 0.52 2.73 16 15 C 0.44 20.28 7.82 87.66 0.69 20.97 16 16 O -0.63 -34.47 15.78 -3.07 -0.05 -34.52 16 17 N -0.57 -28.84 5.29 -306.99 -1.62 -30.47 16 18 C -0.33 -18.83 9.68 84.04 0.81 -18.01 16 19 H 0.08 4.71 7.16 -2.91 -0.02 4.68 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 21 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 22 Si 0.99 42.76 29.55 68.60 2.03 44.78 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 C 0.12 2.91 6.60 86.85 0.57 3.48 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.49 5.51 -2.39 -0.01 1.48 16 30 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.38 4.32 9.05 -74.06 -0.67 3.65 16 34 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.17 7.76 -2.39 -0.02 1.16 16 40 H 0.35 10.78 7.89 -89.70 -0.71 10.07 16 41 H 0.10 3.00 8.09 -2.39 -0.02 2.98 16 42 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 44 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.06 1.66 8.04 -2.38 -0.02 1.64 16 Total: -1.00 -79.11 376.58 -1.49 -80.61 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -1.10 Total: 37.14 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 5.99 Total: 19.81 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -6.99 Total: -116.87 kcal Atomic # 8 Polarization: -64.05 SS G_CDS: -1.42 Total: -65.47 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -79.11 -1.49 -80.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182220265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.517 kcal (2) G-P(sol) polarization free energy of solvation -79.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds