Wall clock time and date at job start Tue Mar 31 2020 04:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34643 * 117.00019 * 2 1 4 4 O 1.21506 * 119.99810 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00028 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99889 * 180.02562 * 5 3 2 7 7 C 1.50705 * 109.47128 * 180.02562 * 6 5 3 8 8 O 1.21289 * 119.99807 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00116 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.62994 * 359.97438 * 9 7 6 11 11 C 1.53192 * 108.77313 * 126.37150 * 10 9 7 12 12 C 1.53039 * 109.31131 * 54.63670 * 11 10 9 13 13 H 1.09001 * 109.46007 * 58.64375 * 12 11 10 14 14 C 1.53004 * 109.45895 * 178.61251 * 12 11 10 15 15 N 1.46499 * 109.47198 * 295.00122 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00466 * 20 18 16 23 23 H 1.48506 * 109.47018 * 240.00565 * 20 18 16 24 24 C 1.53039 * 109.53946 * 298.63276 * 12 11 10 25 25 H 1.08998 * 109.50050 * 181.31330 * 24 12 11 26 26 C 1.53001 * 109.49821 * 301.41435 * 24 12 11 27 27 C 1.46924 * 120.63040 * 179.97438 * 9 7 6 28 28 H 1.09004 * 109.47443 * 59.99724 * 1 2 3 29 29 H 1.08998 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46837 * 299.99801 * 1 2 3 31 31 H 0.97000 * 120.00341 * 0.02562 * 5 3 2 32 32 H 1.09001 * 109.47132 * 60.00451 * 6 5 3 33 33 H 1.08994 * 109.47138 * 299.99568 * 6 5 3 34 34 H 1.09005 * 109.58760 * 6.58839 * 10 9 7 35 35 H 1.08996 * 109.58662 * 246.15990 * 10 9 7 36 36 H 1.08998 * 109.50072 * 294.68866 * 11 10 9 37 37 H 1.08995 * 109.52572 * 174.60197 * 11 10 9 38 38 H 1.09009 * 109.46730 * 174.99909 * 14 12 11 39 39 H 1.08998 * 109.46846 * 55.00454 * 14 12 11 40 40 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 41 41 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.46979 * 59.99929 * 26 24 12 43 43 H 1.08999 * 109.46796 * 179.97438 * 26 24 12 44 44 H 1.09000 * 109.47008 * 299.99979 * 26 24 12 45 45 H 1.09000 * 109.58473 * 353.41516 * 27 9 7 46 46 H 1.08996 * 109.58863 * 113.69945 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0742 2.5756 0.0011 7 6 5.5682 2.3781 0.0010 8 8 6.0318 1.2573 0.0000 9 7 6.3892 3.4470 0.0019 10 6 5.8426 4.8107 0.0026 11 6 6.4571 5.5876 1.1712 12 6 7.9831 5.5222 1.0757 13 1 8.3057 5.9419 0.1228 14 6 8.6005 6.3261 2.2218 15 7 8.2625 7.7426 2.0623 16 6 8.7135 8.6608 2.9725 17 1 9.3148 8.3402 3.8104 18 6 8.3981 10.0038 2.8182 19 7 7.6650 10.3945 1.7972 20 14 9.0128 11.2563 4.0602 21 1 9.8095 10.5662 5.1063 22 1 9.8640 12.2596 3.3717 23 1 7.8539 11.9388 4.6899 24 6 8.4399 4.0647 1.1713 25 1 9.5281 4.0207 1.1267 26 6 7.9576 3.4640 2.4933 27 6 7.8478 3.2705 0.0024 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9375 0.4567 0.0005 32 1 3.7810 3.1323 0.8911 33 1 3.7817 3.1327 -0.8889 34 1 4.7596 4.7703 0.1200 35 1 6.0923 5.3049 -0.9363 36 1 6.1323 5.1454 2.1130 37 1 6.1342 6.6277 1.1271 38 1 9.6840 6.2071 2.2066 39 1 8.2085 5.9637 3.1721 40 1 7.7228 8.0306 1.3095 41 1 7.4444 11.3329 1.6896 42 1 6.8694 3.5071 2.5363 43 1 8.2828 2.4259 2.5607 44 1 8.3768 4.0312 3.3244 45 1 8.0880 2.2137 0.1196 46 1 8.2605 3.6369 -0.9375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183975592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:08 Heat of formation + Delta-G solvation = -105.269155 kcal Electronic energy + Delta-G solvation = -26641.725304 eV Core-core repulsion = 22759.847559 eV Total energy + Delta-G solvation = -3881.877745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97538 -40.36331 -38.38430 -36.89245 -35.10779 -34.88582 -33.50370 -31.85821 -30.39044 -29.31182 -27.56117 -27.08122 -25.96631 -23.70992 -23.08677 -21.87975 -21.39084 -20.26410 -19.33235 -18.32269 -17.44330 -17.10299 -16.96521 -16.68887 -16.18994 -15.91336 -15.06723 -14.84904 -14.56168 -14.35011 -14.23492 -14.01519 -13.78074 -13.60956 -13.34606 -13.00880 -12.77217 -12.55363 -12.50324 -12.36957 -12.24410 -11.63743 -11.43521 -11.09240 -11.08780 -10.97149 -10.95734 -10.81215 -10.42446 -10.35507 -10.23832 -10.01910 -9.92564 -9.67238 -9.64721 -8.88718 -8.75422 -6.92949 -5.79115 -3.07043 1.74243 2.27084 2.51205 2.80735 3.41745 3.47795 3.49694 3.95805 4.09255 4.56647 4.72044 4.82366 4.86738 4.88825 4.91429 4.95392 4.99570 5.06499 5.17008 5.18037 5.38609 5.49099 5.57281 5.64171 5.72146 5.72665 5.78820 5.82674 5.99818 6.01595 6.05172 6.13186 6.24416 6.32400 6.38352 6.41958 6.61260 6.77372 6.90323 7.04998 7.15043 7.68994 7.80971 7.99791 8.40450 9.51713 10.09687 10.44052 11.43922 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002596 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.492623 B =10784.684879 C =11732.071269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.571 6.571 5 N -0.698 5.698 6 C 0.118 3.882 7 C 0.512 3.488 8 O -0.544 6.544 9 N -0.596 5.596 10 C 0.100 3.900 11 C -0.129 4.129 12 C -0.089 4.089 13 H 0.072 0.928 14 C 0.158 3.842 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.098 4.098 25 H 0.083 0.917 26 C -0.145 4.145 27 C 0.117 3.883 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.418 0.582 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.017 0.983 39 H 0.022 0.978 40 H 0.383 0.617 41 H 0.254 0.746 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 -20.601 -5.865 23.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.402 3.598 4 O -0.460 6.460 5 N -0.360 5.360 6 C -0.009 4.009 7 C 0.299 3.701 8 O -0.422 6.422 9 N -0.329 5.329 10 C -0.023 4.023 11 C -0.167 4.167 12 C -0.108 4.108 13 H 0.091 0.909 14 C 0.031 3.969 15 N -0.376 5.376 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.118 4.118 25 H 0.101 0.899 26 C -0.202 4.202 27 C -0.005 4.005 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.257 0.743 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.914 -20.644 -5.716 23.202 hybrid contribution 0.246 0.779 0.428 0.923 sum -8.668 -19.865 -5.288 22.309 Atomic orbital electron populations 1.23228 0.74097 1.03575 1.02902 1.86247 1.24380 1.30775 1.87032 1.17965 0.83044 0.82331 0.76420 1.91029 1.64626 1.34782 1.55564 1.44211 1.03279 1.10398 1.78140 1.21097 0.89599 0.84727 1.05449 1.20273 0.88437 0.84832 0.76564 1.90690 1.77123 1.23416 1.50964 1.48029 1.07008 1.06177 1.71703 1.22014 0.98607 0.81110 1.00529 1.21983 0.95780 1.01458 0.97433 1.21315 0.94957 0.93862 1.00665 0.90924 1.20713 0.96210 0.85413 0.94594 1.42387 1.63276 1.00861 1.31121 1.19268 1.26028 0.87863 1.03690 0.91238 1.24726 1.00835 0.97092 0.98405 1.69660 1.42519 1.15438 1.30661 0.86133 0.77932 0.81697 0.80532 1.20608 1.21906 1.21877 1.21483 1.00399 0.95078 0.94843 0.89873 1.21862 1.01448 0.99874 0.97039 1.21749 0.78244 1.01922 0.98563 0.91731 0.87867 0.91684 0.74341 0.87707 0.87847 0.89749 0.90460 0.91219 0.89106 0.96492 0.96062 0.78306 0.93585 0.92691 0.93301 0.91846 0.89019 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.70 10.62 -40.33 -0.43 -4.13 16 3 C 0.65 7.60 8.75 54.05 0.47 8.08 16 4 O -0.57 -8.13 16.13 -19.28 -0.31 -8.44 16 5 N -0.70 -7.27 5.53 -66.47 -0.37 -7.64 16 6 C 0.12 1.14 4.50 -5.19 -0.02 1.12 16 7 C 0.51 5.73 7.77 -10.98 -0.09 5.64 16 8 O -0.54 -7.42 15.08 5.55 0.08 -7.34 16 9 N -0.60 -6.36 2.41 -172.75 -0.42 -6.78 16 10 C 0.10 1.02 6.34 -3.71 -0.02 0.99 16 11 C -0.13 -1.70 4.91 -26.61 -0.13 -1.83 16 12 C -0.09 -1.27 1.96 -90.58 -0.18 -1.45 16 13 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 14 C 0.16 2.97 5.18 -4.04 -0.02 2.95 16 15 N -0.73 -17.65 5.32 -59.90 -0.32 -17.96 16 16 C -0.24 -6.49 9.99 -15.06 -0.15 -6.65 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 20 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.10 -1.16 2.72 -90.49 -0.25 -1.41 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 26 C -0.15 -1.76 8.38 37.16 0.31 -1.45 16 27 C 0.12 1.27 5.83 -3.70 -0.02 1.25 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.42 4.20 7.55 -40.82 -0.31 3.89 16 32 H 0.11 0.98 7.69 -51.93 -0.40 0.58 16 33 H 0.10 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 37 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 38 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 39 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 40 H 0.38 9.59 6.85 -40.82 -0.28 9.31 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.05 0.69 5.97 -51.93 -0.31 0.38 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 45 H 0.09 1.05 7.00 -51.93 -0.36 0.69 16 46 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -33.23 366.57 -6.78 -40.01 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.12 Total: 8.31 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 0.88 Total: 8.19 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.38 Total: -59.27 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.66 Total: -19.91 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.23 -6.78 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183975592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.261 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds