Wall clock time and date at job start Tue Mar 31 2020 04:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34643 * 117.00019 * 2 1 4 4 O 1.21506 * 119.99810 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00028 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99889 * 180.02562 * 5 3 2 7 7 C 1.50705 * 109.47128 * 180.02562 * 6 5 3 8 8 O 1.21289 * 119.99807 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00116 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.62994 * 359.97438 * 9 7 6 11 11 C 1.53192 * 108.77313 * 126.37150 * 10 9 7 12 12 C 1.53039 * 109.31131 * 54.63670 * 11 10 9 13 13 H 1.09001 * 109.46007 * 58.64375 * 12 11 10 14 14 C 1.53004 * 109.45895 * 178.61251 * 12 11 10 15 15 N 1.46499 * 109.47198 * 295.00122 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00466 * 20 18 16 23 23 H 1.48506 * 109.47018 * 240.00565 * 20 18 16 24 24 C 1.53039 * 109.53946 * 298.63276 * 12 11 10 25 25 H 1.08998 * 109.50050 * 181.31330 * 24 12 11 26 26 C 1.53001 * 109.49821 * 301.41435 * 24 12 11 27 27 C 1.46924 * 120.63040 * 179.97438 * 9 7 6 28 28 H 1.09004 * 109.47443 * 59.99724 * 1 2 3 29 29 H 1.08998 * 109.47066 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46837 * 299.99801 * 1 2 3 31 31 H 0.97000 * 120.00341 * 0.02562 * 5 3 2 32 32 H 1.09001 * 109.47132 * 60.00451 * 6 5 3 33 33 H 1.08994 * 109.47138 * 299.99568 * 6 5 3 34 34 H 1.09005 * 109.58760 * 6.58839 * 10 9 7 35 35 H 1.08996 * 109.58662 * 246.15990 * 10 9 7 36 36 H 1.08998 * 109.50072 * 294.68866 * 11 10 9 37 37 H 1.08995 * 109.52572 * 174.60197 * 11 10 9 38 38 H 1.09009 * 109.46730 * 174.99909 * 14 12 11 39 39 H 1.08998 * 109.46846 * 55.00454 * 14 12 11 40 40 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 41 41 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.46979 * 59.99929 * 26 24 12 43 43 H 1.08999 * 109.46796 * 179.97438 * 26 24 12 44 44 H 1.09000 * 109.47008 * 299.99979 * 26 24 12 45 45 H 1.09000 * 109.58473 * 353.41516 * 27 9 7 46 46 H 1.08996 * 109.58863 * 113.69945 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0742 2.5756 0.0011 7 6 5.5682 2.3781 0.0010 8 8 6.0318 1.2573 0.0000 9 7 6.3892 3.4470 0.0019 10 6 5.8426 4.8107 0.0026 11 6 6.4571 5.5876 1.1712 12 6 7.9831 5.5222 1.0757 13 1 8.3057 5.9419 0.1228 14 6 8.6005 6.3261 2.2218 15 7 8.2625 7.7426 2.0623 16 6 8.7135 8.6608 2.9725 17 1 9.3148 8.3402 3.8104 18 6 8.3981 10.0038 2.8182 19 7 7.6650 10.3945 1.7972 20 14 9.0128 11.2563 4.0602 21 1 9.8095 10.5662 5.1063 22 1 9.8640 12.2596 3.3717 23 1 7.8539 11.9388 4.6899 24 6 8.4399 4.0647 1.1713 25 1 9.5281 4.0207 1.1267 26 6 7.9576 3.4640 2.4933 27 6 7.8478 3.2705 0.0024 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9375 0.4567 0.0005 32 1 3.7810 3.1323 0.8911 33 1 3.7817 3.1327 -0.8889 34 1 4.7596 4.7703 0.1200 35 1 6.0923 5.3049 -0.9363 36 1 6.1323 5.1454 2.1130 37 1 6.1342 6.6277 1.1271 38 1 9.6840 6.2071 2.2066 39 1 8.2085 5.9637 3.1721 40 1 7.7228 8.0306 1.3095 41 1 7.4444 11.3329 1.6896 42 1 6.8694 3.5071 2.5363 43 1 8.2828 2.4259 2.5607 44 1 8.3768 4.0312 3.3244 45 1 8.0880 2.2137 0.1196 46 1 8.2605 3.6369 -0.9375 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183975592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:07 Heat of formation + Delta-G solvation = -129.072246 kcal Electronic energy + Delta-G solvation = -26642.757484 eV Core-core repulsion = 22759.847559 eV Total energy + Delta-G solvation = -3882.909924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86013 -41.26058 -39.42956 -37.71617 -36.59557 -35.78503 -34.89254 -33.23416 -31.95539 -30.12849 -28.48346 -28.26432 -26.94725 -25.41258 -24.17537 -23.04063 -22.45440 -21.21855 -20.21033 -19.56926 -18.86344 -18.21627 -17.77727 -17.66590 -17.07101 -16.86012 -16.67130 -15.87303 -15.63885 -15.49006 -15.38923 -15.15683 -15.03556 -14.68439 -14.44363 -14.19848 -13.89966 -13.72317 -13.62228 -13.41111 -12.96989 -12.96162 -12.83804 -12.65548 -12.42688 -12.13932 -12.01141 -11.90219 -11.89102 -11.81804 -11.54715 -11.42437 -11.20439 -10.95932 -10.85978 -10.47767 -9.68436 -8.94520 -7.93703 -5.20652 0.98208 1.39467 1.48026 1.48391 1.58089 1.63105 1.95545 2.57141 3.20891 3.26390 3.40219 3.74862 3.78091 3.84969 4.07269 4.19472 4.21000 4.26370 4.34554 4.35814 4.38478 4.42941 4.49369 4.67871 4.69201 4.74995 4.78418 4.83712 4.87672 4.97779 5.00651 5.11399 5.20510 5.21099 5.26673 5.29129 5.34568 5.49900 5.55072 5.64114 6.21129 6.26935 6.30054 6.92953 7.15738 7.36680 8.14107 8.37478 9.29815 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.019366 B = 0.002596 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.492623 B =10784.684879 C =11732.071269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.375 6.375 3 C 0.649 3.351 4 O -0.600 6.600 5 N -0.693 5.693 6 C 0.118 3.882 7 C 0.516 3.484 8 O -0.568 6.568 9 N -0.594 5.594 10 C 0.107 3.893 11 C -0.124 4.124 12 C -0.079 4.079 13 H 0.070 0.930 14 C 0.158 3.842 15 N -0.742 5.742 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.074 4.074 19 N -0.966 5.966 20 Si 0.968 3.032 21 H -0.269 1.269 22 H -0.294 1.294 23 H -0.294 1.294 24 C -0.090 4.090 25 H 0.091 0.909 26 C -0.141 4.141 27 C 0.121 3.879 28 H 0.064 0.936 29 H 0.136 0.864 30 H 0.062 0.938 31 H 0.420 0.580 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.014 0.986 39 H 0.019 0.981 40 H 0.376 0.624 41 H 0.251 0.749 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.985 -21.836 -6.042 24.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.288 6.288 3 C 0.402 3.598 4 O -0.492 6.492 5 N -0.356 5.356 6 C -0.008 4.008 7 C 0.305 3.695 8 O -0.448 6.448 9 N -0.326 5.326 10 C -0.015 4.015 11 C -0.162 4.162 12 C -0.098 4.098 13 H 0.088 0.912 14 C 0.031 3.969 15 N -0.385 5.385 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.266 4.266 19 N -0.617 5.617 20 Si 0.798 3.202 21 H -0.193 1.193 22 H -0.221 1.221 23 H -0.221 1.221 24 C -0.110 4.110 25 H 0.109 0.891 26 C -0.198 4.198 27 C -0.001 4.001 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.081 0.919 31 H 0.259 0.741 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.032 0.968 39 H 0.037 0.963 40 H 0.209 0.791 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.109 0.891 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.021 -21.925 -5.880 24.427 hybrid contribution 0.291 1.079 0.514 1.230 sum -8.730 -20.847 -5.366 23.229 Atomic orbital electron populations 1.23547 0.72411 1.05768 1.02790 1.86263 1.26056 1.29803 1.86666 1.18092 0.83228 0.82435 0.76037 1.91006 1.65271 1.35807 1.57085 1.44228 1.03000 1.10771 1.77559 1.21166 0.88474 0.84710 1.06424 1.20424 0.88898 0.84383 0.75842 1.90684 1.77627 1.24329 1.52146 1.48027 1.06997 1.06219 1.71334 1.21990 0.99580 0.80411 0.99533 1.21865 0.95113 1.00434 0.98761 1.21195 0.95470 0.94692 0.98440 0.91187 1.20858 0.96195 0.83382 0.96429 1.42570 1.62993 1.02624 1.30302 1.19628 1.25117 0.88696 1.03921 0.91105 1.25484 1.01793 0.98971 1.00400 1.69797 1.44118 1.15419 1.32414 0.85146 0.77233 0.79222 0.78609 1.19345 1.22104 1.22087 1.21414 1.00976 0.93249 0.95327 0.89053 1.21813 1.01032 1.00251 0.96716 1.21724 0.78311 1.01578 0.98531 0.91764 0.84560 0.91928 0.74078 0.87087 0.86434 0.87663 0.89283 0.91670 0.91663 0.96825 0.96304 0.79123 0.94040 0.93166 0.92363 0.92992 0.89145 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.78 16 2 O -0.37 -7.01 10.62 -55.52 -0.59 -7.60 16 3 C 0.65 14.49 8.75 129.79 1.14 15.62 16 4 O -0.60 -16.57 16.13 19.82 0.32 -16.25 16 5 N -0.69 -13.50 5.53 -594.61 -3.29 -16.79 16 6 C 0.12 2.08 4.50 85.63 0.39 2.47 16 7 C 0.52 10.55 7.77 87.66 0.68 11.24 16 8 O -0.57 -14.56 15.08 -3.06 -0.05 -14.60 16 9 N -0.59 -11.41 2.41 -818.85 -1.97 -13.38 16 10 C 0.11 1.97 6.34 86.36 0.55 2.52 16 11 C -0.12 -3.18 4.91 30.67 0.15 -3.03 16 12 C -0.08 -2.19 1.96 -10.77 -0.02 -2.21 16 13 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 14 C 0.16 5.90 5.18 86.38 0.45 6.35 16 15 N -0.74 -36.06 5.32 -343.44 -1.83 -37.89 16 16 C -0.24 -13.26 9.99 84.03 0.84 -12.42 16 17 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 19 N -0.97 -57.83 13.06 21.65 0.28 -57.55 16 20 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 24 C -0.09 -1.99 2.72 -10.71 -0.03 -2.02 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 C -0.14 -3.23 8.38 71.98 0.60 -2.63 16 27 C 0.12 2.35 5.83 86.37 0.50 2.86 16 28 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.42 7.91 7.55 -92.71 -0.70 7.21 16 32 H 0.11 1.87 7.69 -2.39 -0.02 1.85 16 33 H 0.12 1.78 7.94 -2.39 -0.02 1.76 16 34 H 0.11 1.54 5.93 -2.38 -0.01 1.52 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.73 6.34 -2.39 -0.02 1.71 16 37 H 0.06 2.05 7.15 -2.39 -0.02 2.03 16 38 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.02 0.73 6.74 -2.39 -0.02 0.71 16 40 H 0.38 19.15 6.85 -92.71 -0.63 18.51 16 41 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 42 H 0.05 1.19 5.97 -2.39 -0.01 1.18 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.30 6.58 -2.39 -0.02 1.28 16 45 H 0.09 1.87 7.00 -2.39 -0.02 1.85 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -70.76 366.57 1.49 -69.28 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.33 Total: 30.25 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 6.91 Total: 16.79 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -6.80 Total: -125.61 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.32 Total: -38.45 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.76 1.49 -69.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183975592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.796 kcal (2) G-P(sol) polarization free energy of solvation -70.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds