Wall clock time and date at job start Tue Mar 31 2020 04:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47405 * 2 1 4 4 C 1.52997 * 109.46983 * 120.00046 * 2 1 3 5 5 C 1.50710 * 109.47066 * 65.00337 * 4 2 1 6 6 O 1.21277 * 119.99665 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00058 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00004 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.28668 * 34.29797 * 8 7 5 10 10 C 1.54385 * 110.32497 * 272.16863 * 8 7 5 11 11 N 1.48821 * 104.46483 * 217.17549 * 10 8 7 12 12 C 1.46903 * 110.96694 * 159.05574 * 11 10 8 13 13 C 1.50700 * 109.47029 * 174.70588 * 12 11 10 14 14 O 1.21297 * 119.99891 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00452 * 179.97438 * 13 12 11 16 16 C 1.37088 * 120.00483 * 180.02562 * 15 13 12 17 17 H 1.08008 * 120.00040 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00318 * 180.02562 * 16 15 13 19 19 N 1.31420 * 120.00048 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00281 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47005 * 59.99919 * 20 18 16 22 22 H 1.48499 * 109.47175 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47303 * 299.99888 * 20 18 16 24 24 C 1.48556 * 104.23766 * 39.50573 * 11 10 8 25 25 C 1.54262 * 110.32436 * 156.42653 * 8 7 5 26 26 H 1.09004 * 110.32088 * 359.97438 * 25 8 7 27 27 O 1.42901 * 110.32227 * 237.89614 * 25 8 7 28 28 H 1.09001 * 109.47250 * 59.99987 * 1 2 3 29 29 H 1.09000 * 109.47597 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46964 * 300.00012 * 1 2 3 31 31 H 1.09007 * 109.46799 * 240.00087 * 2 1 3 32 32 H 1.08998 * 109.47429 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47347 * 300.00132 * 3 2 1 34 34 H 1.09001 * 109.46970 * 59.99541 * 3 2 1 35 35 H 1.08990 * 109.47574 * 305.00154 * 4 2 1 36 36 H 1.09007 * 109.47142 * 184.99653 * 4 2 1 37 37 H 0.97002 * 119.99769 * 359.97438 * 7 5 4 38 38 H 1.09001 * 110.41253 * 335.93051 * 10 8 7 39 39 H 1.09001 * 110.40418 * 98.37030 * 10 8 7 40 40 H 1.09001 * 109.46764 * 294.70271 * 12 11 10 41 41 H 1.08996 * 109.47572 * 54.70482 * 12 11 10 42 42 H 0.97008 * 119.99370 * 359.97438 * 15 13 12 43 43 H 0.96996 * 120.00147 * 179.97438 * 19 18 16 44 44 H 1.09009 * 110.40917 * 201.71550 * 24 11 10 45 45 H 1.08990 * 110.41815 * 79.27193 * 24 11 10 46 46 H 0.96706 * 113.99889 * 179.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 -2.1734 1.1888 6 8 1.0110 -2.5902 0.2402 7 7 1.9844 -3.0086 2.1894 8 6 1.5964 -4.4200 2.1309 9 1 1.6112 -4.7736 1.0999 10 6 0.1937 -4.6165 2.7451 11 7 0.2787 -5.9209 3.4565 12 6 -0.7664 -6.0289 4.4832 13 6 -0.7326 -7.4073 5.0914 14 8 0.0818 -8.2199 4.7071 15 7 -1.6071 -7.7371 6.0624 16 6 -1.5760 -8.9908 6.6161 17 1 -0.8509 -9.7145 6.2738 18 6 -2.4780 -9.3310 7.6167 19 7 -3.3607 -8.4508 8.0328 20 14 -2.4360 -11.0396 8.3707 21 1 -1.1072 -11.2747 8.9904 22 1 -3.4921 -11.1486 9.4089 23 1 -2.6750 -12.0537 7.3125 24 6 1.6308 -5.9140 4.0719 25 6 2.5413 -5.2721 3.0032 26 1 3.2941 -4.6401 3.4745 27 8 3.1687 -6.2839 2.2129 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2619 2.1369 36 1 3.1263 -0.6444 1.2951 37 1 2.4882 -2.6751 2.9482 38 1 -0.0296 -3.8134 3.4475 39 1 -0.5622 -4.6579 1.9609 40 1 -0.5909 -5.2846 5.2599 41 1 -1.7418 -5.8563 4.0283 42 1 -2.2582 -7.0871 6.3700 43 1 -3.9905 -8.6884 8.7311 44 1 1.9560 -6.9321 4.2864 45 1 1.6313 -5.3141 4.9818 46 1 3.7751 -6.8508 2.7089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190717642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:25 Heat of formation + Delta-G solvation = -121.791178 kcal Electronic energy + Delta-G solvation = -26334.061659 eV Core-core repulsion = 22451.467466 eV Total energy + Delta-G solvation = -3882.594193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.44492 -39.15370 -37.85085 -35.94663 -35.59551 -34.50642 -33.80812 -31.28640 -30.48766 -28.71140 -27.76723 -27.34925 -26.24866 -24.23520 -21.75160 -21.39728 -20.77116 -20.08007 -19.19874 -17.90947 -17.60681 -17.08276 -16.26131 -16.02350 -15.91067 -15.32366 -14.97731 -14.80572 -14.53373 -14.14671 -14.08870 -13.87896 -13.80727 -13.30558 -12.94135 -12.74618 -12.65431 -12.55853 -12.26254 -12.04515 -11.93168 -11.85851 -11.51306 -11.39539 -11.24531 -11.14771 -10.97198 -10.93571 -10.80181 -10.44769 -10.22247 -10.08619 -9.83826 -9.49063 -9.32505 -8.53490 -8.05232 -7.95510 -6.42059 -3.82939 2.44969 2.82614 3.19552 3.25316 3.29683 3.89143 4.01143 4.12413 4.24709 4.38560 4.47614 4.54507 4.62155 4.76124 4.90747 4.97995 5.14287 5.16948 5.21720 5.23607 5.26670 5.33543 5.40651 5.42219 5.59195 5.62037 5.68156 5.72481 5.79344 5.85050 5.86227 5.98197 6.07177 6.16711 6.24497 6.25416 6.31229 7.00370 7.12245 7.25446 7.54483 7.65383 8.04018 8.05233 8.61290 9.17556 9.53711 10.05690 10.75657 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.002393 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.172016 B =11699.494543 C =12426.704550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.081 4.081 3 C -0.148 4.148 4 C -0.137 4.137 5 C 0.513 3.487 6 O -0.529 6.529 7 N -0.726 5.726 8 C 0.147 3.853 9 H 0.112 0.888 10 C 0.024 3.976 11 N -0.475 5.475 12 C 0.034 3.966 13 C 0.445 3.555 14 O -0.577 6.577 15 N -0.565 5.565 16 C -0.299 4.299 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.903 5.903 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.007 3.993 25 C 0.098 3.902 26 H 0.063 0.937 27 O -0.552 6.552 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.398 0.602 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.108 0.892 45 H 0.045 0.955 46 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.491 19.303 -8.991 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.177 4.177 5 C 0.300 3.700 6 O -0.405 6.405 7 N -0.379 5.379 8 C 0.041 3.959 9 H 0.130 0.870 10 C -0.105 4.105 11 N -0.199 5.199 12 C -0.098 4.098 13 C 0.230 3.770 14 O -0.461 6.461 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.758 3.242 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.121 4.121 25 C 0.038 3.962 26 H 0.081 0.919 27 O -0.357 6.357 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.233 0.767 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.127 0.873 45 H 0.064 0.936 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 10.981 18.236 -10.623 23.791 hybrid contribution 0.096 0.204 2.253 2.265 sum 11.077 18.440 -8.370 23.082 Atomic orbital electron populations 1.21969 0.94600 1.03560 1.01046 1.20867 0.96774 0.95264 0.97121 1.21865 1.00797 0.95842 1.02025 1.21794 1.02842 0.91919 1.01153 1.20758 0.79030 0.88297 0.81888 1.90698 1.39040 1.77776 1.33002 1.46115 1.58377 1.09418 1.23958 1.21528 0.92461 0.79414 1.02454 0.86975 1.23596 0.97123 0.91190 0.98615 1.65217 1.01453 1.29052 1.24188 1.22093 0.96617 0.97245 0.93825 1.19667 0.85041 0.88905 0.83413 1.90506 1.40296 1.51546 1.63718 1.41851 1.30988 1.14332 1.32975 1.19643 1.16791 0.90029 1.16346 0.87969 1.25266 0.95759 0.99690 0.97281 1.69606 1.19672 1.35003 1.30114 0.85911 0.77853 0.81816 0.78598 1.19956 1.20997 1.19859 1.23913 0.90196 1.03249 0.94768 1.22664 0.93364 0.89342 0.90850 0.91912 1.86519 1.63094 1.47287 1.38829 0.92940 0.90564 0.93366 0.90376 0.92731 0.92360 0.92653 0.88861 0.88943 0.76729 0.93494 0.89124 0.93267 0.89074 0.77515 0.91831 0.87346 0.93645 0.76956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.93 37.16 0.33 -1.03 16 2 C -0.08 -0.63 2.57 -90.62 -0.23 -0.86 16 3 C -0.15 -0.85 9.19 37.15 0.34 -0.51 16 4 C -0.14 -0.93 5.17 -27.88 -0.14 -1.07 16 5 C 0.51 5.32 7.55 -10.98 -0.08 5.23 16 6 O -0.53 -7.59 13.64 5.56 0.08 -7.51 16 7 N -0.73 -6.76 5.08 -52.46 -0.27 -7.02 16 8 C 0.15 1.85 3.19 -66.55 -0.21 1.64 16 9 H 0.11 1.74 7.44 -51.93 -0.39 1.35 16 10 C 0.02 0.34 6.22 -2.03 -0.01 0.32 16 11 N -0.47 -8.11 5.07 -231.18 -1.17 -9.28 16 12 C 0.03 0.61 5.30 -4.97 -0.03 0.59 16 13 C 0.44 10.52 7.58 -10.99 -0.08 10.43 16 14 O -0.58 -15.54 14.42 5.54 0.08 -15.46 16 15 N -0.56 -14.32 5.29 -10.96 -0.06 -14.37 16 16 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 17 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 18 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 19 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 20 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C 0.01 0.11 5.54 -2.19 -0.01 0.10 16 25 C 0.10 1.18 4.18 -25.35 -0.11 1.07 16 26 H 0.06 0.56 7.65 -51.93 -0.40 0.17 16 27 O -0.55 -7.31 13.26 -35.23 -0.47 -7.78 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.87 5.95 -51.93 -0.31 0.56 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.72 7.96 -51.93 -0.41 0.30 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.40 2.48 8.33 -40.82 -0.34 2.14 16 38 H 0.05 0.58 7.92 -51.93 -0.41 0.17 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 41 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 42 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.11 1.94 6.85 -51.92 -0.36 1.58 16 45 H 0.05 0.62 7.82 -51.93 -0.41 0.22 16 46 H 0.38 3.57 9.12 45.56 0.42 3.98 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -34.42 374.83 -7.59 -42.01 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -6.65 Total: 13.63 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.48 Total: 7.94 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.77 Total: -54.50 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -0.31 Total: -30.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.42 -7.59 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190717642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.782 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds