Wall clock time and date at job start Tue Mar 31 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47405 * 2 1 4 4 C 1.52997 * 109.46983 * 120.00046 * 2 1 3 5 5 C 1.50710 * 109.47066 * 65.00337 * 4 2 1 6 6 O 1.21277 * 119.99665 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00058 * 180.02562 * 5 4 2 8 8 C 1.46496 * 120.00004 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.28668 * 34.29797 * 8 7 5 10 10 C 1.54385 * 110.32497 * 272.16863 * 8 7 5 11 11 N 1.48821 * 104.46483 * 217.17549 * 10 8 7 12 12 C 1.46903 * 110.96694 * 159.05574 * 11 10 8 13 13 C 1.50700 * 109.47029 * 174.70588 * 12 11 10 14 14 O 1.21297 * 119.99891 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00452 * 179.97438 * 13 12 11 16 16 C 1.37088 * 120.00483 * 180.02562 * 15 13 12 17 17 H 1.08008 * 120.00040 * 359.97438 * 16 15 13 18 18 C 1.38949 * 120.00318 * 180.02562 * 16 15 13 19 19 N 1.31420 * 120.00048 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00281 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47005 * 59.99919 * 20 18 16 22 22 H 1.48499 * 109.47175 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47303 * 299.99888 * 20 18 16 24 24 C 1.48556 * 104.23766 * 39.50573 * 11 10 8 25 25 C 1.54262 * 110.32436 * 156.42653 * 8 7 5 26 26 H 1.09004 * 110.32088 * 359.97438 * 25 8 7 27 27 O 1.42901 * 110.32227 * 237.89614 * 25 8 7 28 28 H 1.09001 * 109.47250 * 59.99987 * 1 2 3 29 29 H 1.09000 * 109.47597 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46964 * 300.00012 * 1 2 3 31 31 H 1.09007 * 109.46799 * 240.00087 * 2 1 3 32 32 H 1.08998 * 109.47429 * 179.97438 * 3 2 1 33 33 H 1.09007 * 109.47347 * 300.00132 * 3 2 1 34 34 H 1.09001 * 109.46970 * 59.99541 * 3 2 1 35 35 H 1.08990 * 109.47574 * 305.00154 * 4 2 1 36 36 H 1.09007 * 109.47142 * 184.99653 * 4 2 1 37 37 H 0.97002 * 119.99769 * 359.97438 * 7 5 4 38 38 H 1.09001 * 110.41253 * 335.93051 * 10 8 7 39 39 H 1.09001 * 110.40418 * 98.37030 * 10 8 7 40 40 H 1.09001 * 109.46764 * 294.70271 * 12 11 10 41 41 H 1.08996 * 109.47572 * 54.70482 * 12 11 10 42 42 H 0.97008 * 119.99370 * 359.97438 * 15 13 12 43 43 H 0.96996 * 120.00147 * 179.97438 * 19 18 16 44 44 H 1.09009 * 110.40917 * 201.71550 * 24 11 10 45 45 H 1.08990 * 110.41815 * 79.27193 * 24 11 10 46 46 H 0.96706 * 113.99889 * 179.97438 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 -2.1734 1.1888 6 8 1.0110 -2.5902 0.2402 7 7 1.9844 -3.0086 2.1894 8 6 1.5964 -4.4200 2.1309 9 1 1.6112 -4.7736 1.0999 10 6 0.1937 -4.6165 2.7451 11 7 0.2787 -5.9209 3.4565 12 6 -0.7664 -6.0289 4.4832 13 6 -0.7326 -7.4073 5.0914 14 8 0.0818 -8.2199 4.7071 15 7 -1.6071 -7.7371 6.0624 16 6 -1.5760 -8.9908 6.6161 17 1 -0.8509 -9.7145 6.2738 18 6 -2.4780 -9.3310 7.6167 19 7 -3.3607 -8.4508 8.0328 20 14 -2.4360 -11.0396 8.3707 21 1 -1.1072 -11.2747 8.9904 22 1 -3.4921 -11.1486 9.4089 23 1 -2.6750 -12.0537 7.3125 24 6 1.6308 -5.9140 4.0719 25 6 2.5413 -5.2721 3.0032 26 1 3.2941 -4.6401 3.4745 27 8 3.1687 -6.2839 2.2129 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8901 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2619 2.1369 36 1 3.1263 -0.6444 1.2951 37 1 2.4882 -2.6751 2.9482 38 1 -0.0296 -3.8134 3.4475 39 1 -0.5622 -4.6579 1.9609 40 1 -0.5909 -5.2846 5.2599 41 1 -1.7418 -5.8563 4.0283 42 1 -2.2582 -7.0871 6.3700 43 1 -3.9905 -8.6884 8.7311 44 1 1.9560 -6.9321 4.2864 45 1 1.6313 -5.3141 4.9818 46 1 3.7751 -6.8508 2.7089 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190717642.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:24 Heat of formation + Delta-G solvation = -151.790815 kcal Electronic energy + Delta-G solvation = -26335.362541 eV Core-core repulsion = 22451.467466 eV Total energy + Delta-G solvation = -3883.895075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40349 -40.41957 -39.42674 -36.81862 -36.55541 -35.92945 -35.35360 -33.29259 -31.64644 -29.66227 -28.80658 -27.91912 -27.66530 -25.95427 -22.87080 -22.36792 -21.74254 -21.00646 -20.71501 -19.89252 -18.49939 -18.05767 -17.72239 -17.27471 -16.76596 -16.66560 -16.38570 -15.97036 -15.72417 -15.61040 -15.46374 -14.89567 -14.64375 -14.58188 -14.23868 -14.14035 -13.53625 -13.48306 -13.36548 -13.13951 -13.10033 -12.98055 -12.92630 -12.68111 -12.45267 -12.43486 -12.12956 -12.05532 -11.82041 -11.71772 -11.54281 -11.48726 -11.06927 -10.71240 -10.37633 -10.17897 -10.01693 -9.41658 -8.46842 -5.95573 1.39244 1.41296 1.52109 1.66956 1.99961 2.04183 2.28599 2.80708 3.16242 3.20037 3.32728 3.57379 3.66239 3.82413 3.95590 4.01697 4.07082 4.18360 4.26651 4.32718 4.40709 4.43542 4.47786 4.59586 4.70292 4.73313 4.75837 4.77469 4.87688 4.88529 5.01095 5.08389 5.15147 5.33949 5.34673 5.40301 5.51815 5.55941 5.77712 5.83402 6.04053 6.55371 6.59944 6.83359 7.12319 7.30247 7.55336 8.11229 8.70352 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.002393 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.172016 B =11699.494543 C =12426.704550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 C -0.142 4.142 4 C -0.128 4.128 5 C 0.508 3.492 6 O -0.576 6.576 7 N -0.710 5.710 8 C 0.154 3.846 9 H 0.078 0.922 10 C 0.031 3.969 11 N -0.507 5.507 12 C 0.047 3.953 13 C 0.442 3.558 14 O -0.614 6.614 15 N -0.574 5.574 16 C -0.332 4.332 17 H 0.079 0.921 18 C -0.014 4.014 19 N -0.921 5.921 20 Si 0.993 3.007 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.274 1.274 24 C 0.007 3.993 25 C 0.109 3.891 26 H 0.107 0.893 27 O -0.574 6.574 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.418 0.582 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.104 0.896 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.553 21.449 -7.766 26.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.102 4.102 3 C -0.199 4.199 4 C -0.168 4.168 5 C 0.297 3.703 6 O -0.455 6.455 7 N -0.365 5.365 8 C 0.047 3.953 9 H 0.097 0.903 10 C -0.098 4.098 11 N -0.231 5.231 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.500 6.500 15 N -0.211 5.211 16 C -0.462 4.462 17 H 0.097 0.903 18 C -0.214 4.214 19 N -0.562 5.562 20 Si 0.817 3.183 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.121 4.121 25 C 0.049 3.951 26 H 0.124 0.876 27 O -0.383 6.383 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.256 0.744 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 12.066 20.420 -9.369 25.502 hybrid contribution -0.230 -0.460 1.805 1.877 sum 11.836 19.960 -7.564 24.407 Atomic orbital electron populations 1.21938 0.95764 1.01696 1.01674 1.20864 0.95825 0.96645 0.96900 1.21812 1.01502 0.94125 1.02493 1.21838 1.04616 0.88803 1.01506 1.21505 0.78007 0.89716 0.81082 1.90697 1.41144 1.78770 1.34882 1.45930 1.58131 1.07804 1.24587 1.21193 0.92204 0.81386 1.00474 0.90342 1.23528 0.97693 0.90280 0.98273 1.65107 1.02101 1.31502 1.24440 1.21936 0.97933 0.93846 0.94755 1.20665 0.83441 0.90732 0.82231 1.90482 1.41503 1.53453 1.64567 1.41916 1.31695 1.13838 1.33694 1.19611 1.17539 0.91048 1.17954 0.90305 1.26047 0.94953 1.03309 0.97060 1.69668 1.19792 1.36424 1.30281 0.84986 0.78261 0.77214 0.77864 1.19507 1.19503 1.19928 1.23891 0.89791 1.01950 0.96512 1.22694 0.93590 0.89156 0.89686 0.87601 1.86483 1.63644 1.48124 1.40017 0.92979 0.93569 0.92098 0.92570 0.91542 0.92616 0.91509 0.86349 0.86183 0.74378 0.91222 0.90660 0.90456 0.87815 0.77044 0.91303 0.90791 0.91837 0.75220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.93 71.98 0.64 -1.96 16 2 C -0.08 -1.15 2.57 -10.80 -0.03 -1.18 16 3 C -0.14 -1.25 9.19 71.98 0.66 -0.59 16 4 C -0.13 -1.34 5.17 29.85 0.15 -1.19 16 5 C 0.51 9.72 7.55 87.66 0.66 10.38 16 6 O -0.58 -16.76 13.64 -3.02 -0.04 -16.80 16 7 N -0.71 -11.44 5.08 -438.28 -2.22 -13.67 16 8 C 0.15 3.71 3.19 45.89 0.15 3.86 16 9 H 0.08 2.48 7.44 -2.39 -0.02 2.46 16 10 C 0.03 0.83 6.22 86.40 0.54 1.37 16 11 N -0.51 -17.08 5.07 -885.32 -4.49 -21.56 16 12 C 0.05 1.65 5.30 85.56 0.45 2.11 16 13 C 0.44 21.23 7.58 87.66 0.66 21.90 16 14 O -0.61 -34.14 14.42 -3.08 -0.04 -34.18 16 15 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 16 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 17 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 18 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 19 N -0.92 -49.72 13.05 21.66 0.28 -49.44 16 20 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 C 0.01 0.20 5.54 86.45 0.48 0.68 16 25 C 0.11 2.42 4.18 31.49 0.13 2.56 16 26 H 0.11 1.48 7.65 -2.39 -0.02 1.46 16 27 O -0.57 -14.90 13.26 -148.98 -1.98 -16.87 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 1.08 5.95 -2.39 -0.01 1.06 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 1.02 7.96 -2.38 -0.02 1.00 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.42 3.47 8.33 -92.71 -0.77 2.70 16 38 H 0.07 1.54 7.92 -2.39 -0.02 1.52 16 39 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.08 2.30 7.88 -2.39 -0.02 2.28 16 41 H 0.10 3.39 8.13 -2.39 -0.02 3.37 16 42 H 0.40 19.36 7.90 -92.70 -0.73 18.63 16 43 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.07 2.69 6.85 -2.38 -0.02 2.67 16 45 H 0.06 1.60 7.82 -2.39 -0.02 1.58 16 46 H 0.40 7.21 9.12 -74.05 -0.68 6.53 16 Total: -1.00 -77.99 374.83 -3.47 -81.45 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -1.17 Total: 37.70 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: 5.79 Total: 19.57 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -8.05 Total: -115.88 kcal Atomic # 8 Polarization: -65.80 SS G_CDS: -2.06 Total: -67.86 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -77.99 -3.47 -81.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190717642.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.336 kcal (2) G-P(sol) polarization free energy of solvation -77.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds