Wall clock time and date at job start Tue Mar 31 2020 04:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47131 * 2 1 4 4 C 1.42912 * 113.99686 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46845 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99916 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99976 * 179.97438 * 5 4 3 8 8 C 1.47610 * 118.74415 * 359.97438 * 7 5 4 9 9 C 1.53833 * 111.28702 * 138.30698 * 8 7 5 10 10 C 1.51271 * 109.63825 * 319.97674 * 9 8 7 11 11 N 1.46203 * 109.09413 * 92.40537 * 10 9 8 12 12 C 1.46897 * 111.00156 * 144.75742 * 11 10 9 13 13 C 1.50699 * 109.46919 * 64.74987 * 12 11 10 14 14 O 1.21294 * 120.00052 * 354.38236 * 13 12 11 15 15 N 1.34771 * 120.00115 * 174.37327 * 13 12 11 16 16 C 1.37097 * 120.00212 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00143 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99991 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47288 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47082 * 120.00236 * 20 18 16 23 23 H 1.48502 * 109.47137 * 240.00381 * 20 18 16 24 24 C 1.41441 * 116.34538 * 272.96464 * 11 10 9 25 25 C 1.44883 * 118.74747 * 180.02562 * 7 5 4 26 26 H 1.09004 * 109.46818 * 59.99913 * 1 2 3 27 27 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47269 * 300.00416 * 1 2 3 29 29 H 1.08998 * 109.47605 * 239.99263 * 2 1 3 30 30 H 1.09001 * 109.46806 * 119.99558 * 2 1 3 31 31 H 1.09003 * 109.46884 * 59.99872 * 4 3 2 32 32 H 1.08998 * 109.47074 * 299.99726 * 4 3 2 33 33 H 1.08999 * 109.11244 * 258.78211 * 8 7 5 34 34 H 1.09009 * 109.11688 * 17.90550 * 8 7 5 35 35 H 1.09004 * 109.44355 * 199.92091 * 9 8 7 36 36 H 1.08994 * 109.43073 * 80.02719 * 9 8 7 37 37 H 1.08994 * 109.53438 * 332.51879 * 10 9 8 38 38 H 1.09000 * 109.53335 * 212.28978 * 10 9 8 39 39 H 1.08990 * 109.47087 * 184.74985 * 12 11 10 40 40 H 1.09006 * 109.47138 * 304.75771 * 12 11 10 41 41 H 0.97004 * 120.00289 * 0.02562 * 15 13 12 42 42 H 0.96991 * 119.99772 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.38913 * 183.64130 * 24 11 10 44 44 H 1.09003 * 109.38722 * 303.32719 * 24 11 10 45 45 H 1.08997 * 109.43352 * 149.65630 * 25 7 5 46 46 H 1.08993 * 109.43477 * 29.78725 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8196 2.9161 -0.0001 6 8 2.9611 3.7728 -0.0015 7 7 5.1211 3.2662 0.0008 8 6 6.1428 2.2008 0.0030 9 6 7.3028 2.5375 -0.9496 10 6 6.7571 3.1643 -2.2135 11 7 6.7465 4.6183 -2.0603 12 6 7.0501 5.2841 -3.3341 13 6 5.9544 4.9928 -4.3268 14 8 5.0664 4.2179 -4.0400 15 7 5.9611 5.5933 -5.5333 16 6 4.9640 5.3287 -6.4363 17 1 4.1729 4.6393 -6.1807 18 6 4.9711 5.9475 -7.6804 19 7 5.9340 6.7860 -7.9917 20 14 3.6122 5.5875 -8.9105 21 1 2.6553 4.6168 -8.3210 22 1 2.8982 6.8468 -9.2419 23 1 4.2025 5.0132 -10.1462 24 6 5.5956 5.1776 -1.4577 25 6 5.4640 4.6739 0.0007 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8341 0.9763 -0.8892 32 1 3.8333 0.9767 0.8908 33 1 6.5334 2.0831 1.0138 34 1 5.6828 1.2644 -0.3130 35 1 7.8425 1.6244 -1.2010 36 1 7.9815 3.2368 -0.4615 37 1 5.7416 2.8088 -2.3876 38 1 7.3897 2.8914 -3.0582 39 1 7.1189 6.3600 -3.1742 40 1 7.9991 4.9127 -3.7210 41 1 6.6713 6.2128 -5.7629 42 1 5.9391 7.2176 -8.8603 43 1 5.6785 6.2643 -1.4588 44 1 4.7116 4.8831 -2.0234 45 1 6.4113 4.8164 0.5206 46 1 4.6827 5.2375 0.5105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194726030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:52 Heat of formation + Delta-G solvation = -99.489646 kcal Electronic energy + Delta-G solvation = -27428.528541 eV Core-core repulsion = 23546.901415 eV Total energy + Delta-G solvation = -3881.627126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41357 -38.98112 -37.83677 -36.91061 -34.98994 -33.76553 -32.54003 -31.68503 -31.28716 -29.70272 -27.55003 -26.44655 -25.43590 -23.96041 -22.94724 -22.12516 -20.59534 -19.24500 -18.92241 -17.89251 -17.36149 -16.84539 -16.61308 -16.16116 -15.72409 -15.32408 -15.17811 -14.83392 -14.64829 -14.28420 -13.92934 -13.82103 -13.53687 -13.29366 -13.04357 -12.92410 -12.68166 -12.51644 -12.02766 -11.79793 -11.60187 -11.55175 -11.45350 -11.38253 -11.24398 -11.09288 -11.00035 -10.72672 -10.54509 -10.35072 -10.24366 -9.82492 -9.57759 -9.50479 -9.02237 -8.55356 -7.98379 -7.45410 -6.43545 -3.84508 2.67095 2.80204 3.14625 3.25783 3.33481 3.72754 3.86706 4.16397 4.27618 4.52184 4.75556 4.83992 4.90597 4.95108 5.01133 5.06411 5.11170 5.16866 5.20803 5.23052 5.41434 5.43713 5.50907 5.63631 5.67955 5.73911 5.75457 5.86575 5.96885 5.98080 6.02122 6.11417 6.12583 6.27235 6.52160 6.54288 6.79941 6.96107 7.36548 7.40732 7.53532 7.76676 8.03818 8.29724 8.58344 9.15767 9.51944 10.02798 10.73330 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.003810 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.974254 B = 7347.769986 C = 9013.541944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.047 3.953 5 C 0.512 3.488 6 O -0.516 6.516 7 N -0.604 5.604 8 C 0.108 3.892 9 C -0.132 4.132 10 C 0.073 3.927 11 N -0.535 5.535 12 C 0.049 3.951 13 C 0.406 3.594 14 O -0.593 6.593 15 N -0.559 5.559 16 C -0.300 4.300 17 H 0.102 0.898 18 C 0.023 3.977 19 N -0.900 5.900 20 Si 0.928 3.072 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.046 3.954 25 C 0.124 3.876 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.895 -11.244 16.932 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.282 6.282 4 C -0.033 4.033 5 C 0.298 3.702 6 O -0.390 6.390 7 N -0.339 5.339 8 C -0.015 4.015 9 C -0.171 4.171 10 C -0.054 4.054 11 N -0.258 5.258 12 C -0.082 4.082 13 C 0.191 3.809 14 O -0.479 6.479 15 N -0.195 5.195 16 C -0.430 4.430 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.541 5.541 20 Si 0.755 3.245 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.084 4.084 25 C 0.001 3.999 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.226 0.774 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.067 -10.939 17.270 20.547 hybrid contribution -0.484 -0.168 -1.561 1.643 sum 1.583 -11.107 15.709 19.303 Atomic orbital electron populations 1.21727 0.93444 1.02113 1.03545 1.22533 0.96014 0.83517 1.00041 1.88041 1.18616 1.26194 1.95366 1.22261 0.83832 0.95157 1.02067 1.20223 0.82664 0.90500 0.76782 1.90725 1.48927 1.51711 1.47622 1.47721 1.05133 1.07247 1.73797 1.22050 0.89962 0.89647 0.99825 1.21936 0.97095 1.01311 0.96735 1.21420 1.01468 0.86848 0.95685 1.58891 1.38869 1.05520 1.22545 1.22066 0.97798 1.00038 0.88336 1.21106 0.89617 0.85855 0.84358 1.90508 1.39709 1.39523 1.78125 1.42023 1.25024 1.39785 1.12671 1.19755 1.04498 1.24847 0.93854 0.88036 1.25269 0.98175 0.96189 0.98223 1.69616 1.32499 1.28859 1.23128 0.85822 0.80491 0.78358 0.79823 1.19269 1.20667 1.20711 1.21772 0.93656 0.98599 0.94376 1.21565 1.01051 0.80189 0.97114 0.91520 0.91059 0.91786 0.93136 0.93401 0.90240 0.90688 0.91679 0.90678 0.90556 0.90228 0.92111 0.91677 0.89578 0.89389 0.77444 0.91879 0.90781 0.91952 0.90222 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.57 6.66 37.16 0.25 0.82 16 3 O -0.36 -5.37 9.88 -55.14 -0.54 -5.91 16 4 C 0.05 0.59 4.75 36.01 0.17 0.76 16 5 C 0.51 8.24 7.70 -10.98 -0.08 8.15 16 6 O -0.52 -10.71 15.93 -14.36 -0.23 -10.94 16 7 N -0.60 -8.19 2.18 -172.38 -0.38 -8.57 16 8 C 0.11 1.05 5.99 -3.00 -0.02 1.03 16 9 C -0.13 -1.38 5.78 -27.17 -0.16 -1.54 16 10 C 0.07 1.12 4.13 -5.07 -0.02 1.10 16 11 N -0.54 -8.55 3.99 -240.90 -0.96 -9.51 16 12 C 0.05 0.85 5.58 -4.98 -0.03 0.82 16 13 C 0.41 9.43 7.22 -10.99 -0.08 9.35 16 14 O -0.59 -15.73 12.19 5.55 0.07 -15.67 16 15 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 16 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 17 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 18 C 0.02 0.63 5.50 -17.46 -0.10 0.53 16 19 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 20 Si 0.93 21.42 29.55 -169.99 -5.02 16.39 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.05 0.78 4.93 -5.70 -0.03 0.75 16 25 C 0.12 1.74 5.52 -3.93 -0.02 1.72 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.90 7.41 -51.93 -0.38 0.52 16 32 H 0.08 0.67 8.04 -51.93 -0.42 0.26 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.62 5.87 -51.92 -0.30 0.32 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.82 7.98 -51.93 -0.41 0.40 16 37 H 0.06 1.14 6.22 -51.93 -0.32 0.82 16 38 H 0.06 1.02 7.58 -51.93 -0.39 0.63 16 39 H 0.09 1.38 7.92 -51.93 -0.41 0.96 16 40 H 0.09 1.37 7.94 -51.93 -0.41 0.96 16 41 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.07 1.19 7.85 -51.93 -0.41 0.79 16 44 H 0.06 1.39 6.22 -51.93 -0.32 1.07 16 45 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 46 H 0.08 1.25 7.28 -51.93 -0.38 0.88 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -35.14 365.88 -8.15 -43.29 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.38 Total: 9.71 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 0.12 Total: 13.87 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.67 Total: -56.26 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.71 Total: -32.51 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.14 -8.15 -43.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194726030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.200 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds