Wall clock time and date at job start Tue Mar 31 2020 04:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47131 * 2 1 4 4 C 1.42912 * 113.99686 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46845 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99916 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99976 * 179.97438 * 5 4 3 8 8 C 1.47610 * 118.74415 * 359.97438 * 7 5 4 9 9 C 1.53833 * 111.28702 * 138.30698 * 8 7 5 10 10 C 1.51271 * 109.63825 * 319.97674 * 9 8 7 11 11 N 1.46203 * 109.09413 * 92.40537 * 10 9 8 12 12 C 1.46897 * 111.00156 * 144.75742 * 11 10 9 13 13 C 1.50699 * 109.46919 * 64.74987 * 12 11 10 14 14 O 1.21294 * 120.00052 * 354.38236 * 13 12 11 15 15 N 1.34771 * 120.00115 * 174.37327 * 13 12 11 16 16 C 1.37097 * 120.00212 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00143 * 0.02562 * 16 15 13 18 18 C 1.38958 * 119.99991 * 180.02562 * 16 15 13 19 19 N 1.31415 * 120.00023 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47288 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47082 * 120.00236 * 20 18 16 23 23 H 1.48502 * 109.47137 * 240.00381 * 20 18 16 24 24 C 1.41441 * 116.34538 * 272.96464 * 11 10 9 25 25 C 1.44883 * 118.74747 * 180.02562 * 7 5 4 26 26 H 1.09004 * 109.46818 * 59.99913 * 1 2 3 27 27 H 1.08994 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47269 * 300.00416 * 1 2 3 29 29 H 1.08998 * 109.47605 * 239.99263 * 2 1 3 30 30 H 1.09001 * 109.46806 * 119.99558 * 2 1 3 31 31 H 1.09003 * 109.46884 * 59.99872 * 4 3 2 32 32 H 1.08998 * 109.47074 * 299.99726 * 4 3 2 33 33 H 1.08999 * 109.11244 * 258.78211 * 8 7 5 34 34 H 1.09009 * 109.11688 * 17.90550 * 8 7 5 35 35 H 1.09004 * 109.44355 * 199.92091 * 9 8 7 36 36 H 1.08994 * 109.43073 * 80.02719 * 9 8 7 37 37 H 1.08994 * 109.53438 * 332.51879 * 10 9 8 38 38 H 1.09000 * 109.53335 * 212.28978 * 10 9 8 39 39 H 1.08990 * 109.47087 * 184.74985 * 12 11 10 40 40 H 1.09006 * 109.47138 * 304.75771 * 12 11 10 41 41 H 0.97004 * 120.00289 * 0.02562 * 15 13 12 42 42 H 0.96991 * 119.99772 * 179.97438 * 19 18 16 43 43 H 1.08994 * 109.38913 * 183.64130 * 24 11 10 44 44 H 1.09003 * 109.38722 * 303.32719 * 24 11 10 45 45 H 1.08997 * 109.43352 * 149.65630 * 25 7 5 46 46 H 1.08993 * 109.43477 * 29.78725 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4310 1.4600 0.0006 5 6 3.8196 2.9161 -0.0001 6 8 2.9611 3.7728 -0.0015 7 7 5.1211 3.2662 0.0008 8 6 6.1428 2.2008 0.0030 9 6 7.3028 2.5375 -0.9496 10 6 6.7571 3.1643 -2.2135 11 7 6.7465 4.6183 -2.0603 12 6 7.0501 5.2841 -3.3341 13 6 5.9544 4.9928 -4.3268 14 8 5.0664 4.2179 -4.0400 15 7 5.9611 5.5933 -5.5333 16 6 4.9640 5.3287 -6.4363 17 1 4.1729 4.6393 -6.1807 18 6 4.9711 5.9475 -7.6804 19 7 5.9340 6.7860 -7.9917 20 14 3.6122 5.5875 -8.9105 21 1 2.6553 4.6168 -8.3210 22 1 2.8982 6.8468 -9.2419 23 1 4.2025 5.0132 -10.1462 24 6 5.5956 5.1776 -1.4577 25 6 5.4640 4.6739 0.0007 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8341 0.9763 -0.8892 32 1 3.8333 0.9767 0.8908 33 1 6.5334 2.0831 1.0138 34 1 5.6828 1.2644 -0.3130 35 1 7.8425 1.6244 -1.2010 36 1 7.9815 3.2368 -0.4615 37 1 5.7416 2.8088 -2.3876 38 1 7.3897 2.8914 -3.0582 39 1 7.1189 6.3600 -3.1742 40 1 7.9991 4.9127 -3.7210 41 1 6.6713 6.2128 -5.7629 42 1 5.9391 7.2176 -8.8603 43 1 5.6785 6.2643 -1.4588 44 1 4.7116 4.8831 -2.0234 45 1 6.4113 4.8164 0.5206 46 1 4.6827 5.2375 0.5105 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194726030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:51 Heat of formation + Delta-G solvation = -126.042212 kcal Electronic energy + Delta-G solvation = -27429.679947 eV Core-core repulsion = 23546.901415 eV Total energy + Delta-G solvation = -3882.778532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63390 -40.54370 -39.00865 -38.27974 -36.41099 -35.67601 -33.60519 -33.35152 -32.52623 -30.95663 -28.84381 -27.63179 -26.94757 -25.55089 -23.73748 -23.28445 -21.92174 -20.96329 -20.08243 -19.87029 -18.45371 -18.09698 -17.61986 -17.58190 -17.05714 -16.62134 -16.50783 -16.31222 -16.07698 -15.69114 -15.50675 -15.41739 -14.73563 -14.59899 -14.15768 -13.96462 -13.90958 -13.62051 -13.31358 -13.28726 -13.12039 -12.98421 -12.70660 -12.48592 -12.40679 -12.37337 -12.27181 -12.18940 -12.13719 -11.79014 -11.72111 -11.50773 -10.85560 -10.77962 -10.70970 -10.04946 -9.66485 -9.05378 -8.50811 -6.00811 1.29995 1.35414 1.49231 1.50349 1.79754 1.99739 2.24854 2.84253 2.97421 3.14927 3.24207 3.52165 3.85510 4.01231 4.04050 4.09735 4.18177 4.22628 4.27002 4.30517 4.34095 4.39383 4.45624 4.48797 4.56748 4.64675 4.73683 4.75348 4.80296 4.91785 4.94727 4.98391 5.11315 5.20853 5.22104 5.34812 5.41137 5.66079 5.89317 6.05870 6.06461 6.29193 6.44373 6.54979 7.07877 7.14151 7.51411 8.07606 8.64866 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.011917 B = 0.003810 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.974254 B = 7347.769986 C = 9013.541944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.407 6.407 4 C 0.050 3.950 5 C 0.497 3.503 6 O -0.580 6.580 7 N -0.600 5.600 8 C 0.100 3.900 9 C -0.120 4.120 10 C 0.071 3.929 11 N -0.515 5.515 12 C 0.056 3.944 13 C 0.404 3.596 14 O -0.628 6.628 15 N -0.571 5.571 16 C -0.334 4.334 17 H 0.070 0.930 18 C -0.010 4.010 19 N -0.917 5.917 20 Si 0.989 3.011 21 H -0.279 1.279 22 H -0.270 1.270 23 H -0.265 1.265 24 C 0.051 3.949 25 C 0.131 3.869 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.019 0.981 38 H 0.058 0.942 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.397 0.603 42 H 0.279 0.721 43 H 0.079 0.921 44 H 0.001 0.999 45 H 0.117 0.883 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.096 -12.828 18.280 22.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.327 6.327 4 C -0.029 4.029 5 C 0.285 3.715 6 O -0.460 6.460 7 N -0.334 5.334 8 C -0.021 4.021 9 C -0.159 4.159 10 C -0.056 4.056 11 N -0.237 5.237 12 C -0.075 4.075 13 C 0.191 3.809 14 O -0.516 6.516 15 N -0.208 5.208 16 C -0.464 4.464 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.558 5.558 20 Si 0.813 3.187 21 H -0.204 1.204 22 H -0.195 1.195 23 H -0.190 1.190 24 C -0.080 4.080 25 C 0.007 3.993 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.019 0.981 45 H 0.135 0.865 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.339 -12.549 18.629 22.876 hybrid contribution -1.152 0.292 -1.961 2.293 sum 3.187 -12.257 16.668 20.933 Atomic orbital electron populations 1.21785 0.93331 1.03588 1.02226 1.22799 0.96255 0.81935 1.01767 1.88001 1.19924 1.28995 1.95733 1.22375 0.83314 0.92723 1.04468 1.21072 0.82944 0.91789 0.75673 1.90683 1.50844 1.53631 1.50800 1.47906 1.05375 1.07889 1.72197 1.22431 0.88850 0.88846 1.01964 1.21886 0.97417 1.02508 0.94051 1.21514 0.99288 0.86306 0.98532 1.59139 1.37514 1.06056 1.20964 1.22200 0.96340 1.01726 0.87265 1.22311 0.90149 0.84080 0.84321 1.90509 1.41567 1.40781 1.78732 1.42092 1.24870 1.40654 1.13230 1.19608 1.05307 1.25904 0.95583 0.91174 1.25989 1.00219 0.95626 0.99177 1.69663 1.33340 1.28910 1.23844 0.84938 0.77701 0.78264 0.77816 1.20446 1.19516 1.19022 1.21698 0.91358 0.99133 0.95801 1.21469 1.02275 0.80703 0.94824 0.93628 0.88141 0.92323 0.92361 0.90497 0.89236 0.86256 0.87677 0.89056 0.87471 0.88948 0.96280 0.92338 0.87576 0.86585 0.76934 0.91186 0.90300 0.98090 0.86525 0.91175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.28 71.98 0.74 -2.05 16 2 C 0.05 0.93 6.66 71.98 0.48 1.41 16 3 O -0.41 -12.11 9.88 -129.94 -1.28 -13.39 16 4 C 0.05 1.21 4.75 71.24 0.34 1.55 16 5 C 0.50 16.25 7.70 87.66 0.68 16.92 16 6 O -0.58 -25.69 15.93 16.00 0.25 -25.43 16 7 N -0.60 -15.59 2.18 -817.68 -1.78 -17.38 16 8 C 0.10 1.56 5.99 86.45 0.52 2.08 16 9 C -0.12 -2.05 5.78 30.31 0.18 -1.88 16 10 C 0.07 2.10 4.13 85.87 0.35 2.45 16 11 N -0.51 -15.93 3.99 -916.06 -3.66 -19.59 16 12 C 0.06 1.91 5.58 85.56 0.48 2.39 16 13 C 0.40 19.45 7.22 87.66 0.63 20.08 16 14 O -0.63 -35.31 12.19 -3.07 -0.04 -35.34 16 15 N -0.57 -29.99 5.29 -306.99 -1.62 -31.61 16 16 C -0.33 -19.63 9.68 84.04 0.81 -18.82 16 17 H 0.07 4.48 7.16 -2.91 -0.02 4.46 16 18 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 19 N -0.92 -50.28 13.05 21.67 0.28 -50.00 16 20 Si 0.99 44.45 29.55 68.60 2.03 46.48 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 C 0.05 1.75 4.93 87.93 0.43 2.19 16 25 C 0.13 3.58 5.52 87.31 0.48 4.06 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.93 7.41 -2.39 -0.02 1.91 16 32 H 0.12 1.73 8.04 -2.39 -0.02 1.72 16 33 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.16 5.87 -2.38 -0.01 1.15 16 35 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.09 1.42 7.98 -2.39 -0.02 1.40 16 37 H 0.02 0.72 6.22 -2.39 -0.01 0.71 16 38 H 0.06 1.77 7.58 -2.39 -0.02 1.76 16 39 H 0.11 3.24 7.92 -2.39 -0.02 3.22 16 40 H 0.12 3.38 7.94 -2.38 -0.02 3.36 16 41 H 0.40 19.67 7.90 -92.71 -0.73 18.94 16 42 H 0.28 14.23 8.31 -92.72 -0.77 13.46 16 43 H 0.08 2.59 7.85 -2.39 -0.02 2.57 16 44 H 0.00 0.04 6.22 -2.39 -0.01 0.03 16 45 H 0.12 2.34 8.11 -2.39 -0.02 2.32 16 46 H 0.07 2.14 7.28 -2.39 -0.02 2.12 16 Total: -1.00 -84.10 365.88 1.02 -83.08 By element: Atomic # 1 Polarization: 32.62 SS G_CDS: 0.25 Total: 32.88 kcal Atomic # 6 Polarization: 23.71 SS G_CDS: 6.59 Total: 30.30 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -6.78 Total: -118.57 kcal Atomic # 8 Polarization: -73.10 SS G_CDS: -1.07 Total: -74.16 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -84.10 1.02 -83.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194726030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.958 kcal (2) G-P(sol) polarization free energy of solvation -84.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds