Wall clock time and date at job start Tue Mar 31 2020 04:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47270 * 2 1 4 4 C 1.52995 * 109.47160 * 120.00009 * 2 1 3 5 5 C 1.53006 * 109.47216 * 65.59125 * 4 2 1 6 6 H 1.09000 * 109.46675 * 307.10565 * 5 4 2 7 7 C 1.50694 * 109.47350 * 187.10284 * 5 4 2 8 8 N 1.34783 * 119.99594 * 66.32287 * 7 5 4 9 9 O 1.21272 * 120.00442 * 246.32150 * 7 5 4 10 10 C 1.50700 * 109.47200 * 67.10034 * 5 4 2 11 11 O 1.21281 * 119.99856 * 0.02562 * 10 5 4 12 12 N 1.34778 * 120.00080 * 180.02562 * 10 5 4 13 13 C 1.46496 * 120.00043 * 180.02562 * 12 10 5 14 14 H 1.08996 * 110.88700 * 37.42694 * 13 12 10 15 15 C 1.54917 * 111.00324 * 273.54681 * 13 12 10 16 16 N 1.47426 * 104.83235 * 204.91667 * 15 13 12 17 17 C 1.36932 * 125.64675 * 204.09112 * 16 15 13 18 18 H 1.08003 * 120.00262 * 5.28039 * 17 16 15 19 19 C 1.38807 * 119.99967 * 185.27373 * 17 16 15 20 20 N 1.31629 * 120.00026 * 5.47309 * 19 17 16 21 21 Si 1.86801 * 120.00190 * 185.46794 * 19 17 16 22 22 H 1.48501 * 109.46994 * 265.00416 * 21 19 17 23 23 H 1.48507 * 109.46930 * 145.00422 * 21 19 17 24 24 H 1.48498 * 109.46887 * 25.00669 * 21 19 17 25 25 C 1.47021 * 108.70011 * 24.35445 * 16 15 13 26 26 C 1.54334 * 107.26771 * 358.58756 * 25 16 15 27 27 H 1.09001 * 110.51228 * 96.45164 * 26 25 16 28 28 O 1.42898 * 110.99988 * 219.59713 * 26 25 16 29 29 H 1.09000 * 109.47153 * 64.57433 * 1 2 3 30 30 H 1.08998 * 109.47202 * 184.57302 * 1 2 3 31 31 H 1.09004 * 109.46850 * 304.57648 * 1 2 3 32 32 H 1.09004 * 109.47318 * 239.99964 * 2 1 3 33 33 H 1.08995 * 109.47294 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47143 * 300.00353 * 3 2 1 35 35 H 1.09003 * 109.47284 * 60.00207 * 3 2 1 36 36 H 1.08997 * 109.47487 * 305.58923 * 4 2 1 37 37 H 1.09002 * 109.47621 * 185.58851 * 4 2 1 38 38 H 0.97002 * 120.00566 * 4.99817 * 8 7 5 39 39 H 0.97003 * 119.99747 * 184.99070 * 8 7 5 40 40 H 0.97004 * 119.99601 * 0.02562 * 12 10 5 41 41 H 1.09006 * 110.36435 * 86.07817 * 15 13 12 42 42 H 1.08996 * 110.45798 * 323.80368 * 15 13 12 43 43 H 0.96993 * 120.00074 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.87931 * 118.13272 * 25 16 15 45 45 H 1.09005 * 109.88390 * 239.29157 * 25 16 15 46 46 H 0.96698 * 114.00204 * 293.78052 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6480 -2.1986 1.1809 6 1 0.5759 -2.2821 1.0028 7 6 1.9946 -2.8711 2.4842 8 7 1.3456 -2.5261 3.6140 9 8 2.8574 -3.7227 2.5165 10 6 2.3974 -2.8658 0.0565 11 8 3.1694 -2.2230 -0.6230 12 7 2.2097 -4.1767 -0.1940 13 6 2.9387 -4.8254 -1.2867 14 1 3.9540 -4.4362 -1.3613 15 6 2.1829 -4.6664 -2.6296 16 7 2.6337 -5.8030 -3.4532 17 6 2.6238 -5.8504 -4.8217 18 1 2.3442 -4.9758 -5.3904 19 6 2.9732 -7.0225 -5.4781 20 7 3.2094 -8.1181 -4.7877 21 14 3.1082 -7.0452 -7.3411 22 1 1.8272 -7.5186 -7.9244 23 1 4.2051 -7.9604 -7.7468 24 1 3.3996 -5.6747 -7.8329 25 6 3.0896 -6.8795 -2.5617 26 6 2.9444 -6.3671 -1.1132 27 1 2.0052 -6.7100 -0.6792 28 8 4.0514 -6.7814 -0.3101 29 1 -0.3633 0.4412 -0.9281 30 1 -0.3633 -1.0244 0.0819 31 1 -0.3633 0.5832 0.8462 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.5973 -0.2685 2.1364 37 1 3.1254 -0.6354 1.3007 38 1 0.6069 -1.8985 3.5767 39 1 1.6173 -2.9054 4.4644 40 1 1.5920 -4.6907 0.3493 41 1 2.4503 -3.7231 -3.1060 42 1 1.1061 -4.7176 -2.4692 43 1 3.4532 -8.9372 -5.2464 44 1 2.4733 -7.7669 -2.7067 45 1 4.1342 -7.1136 -2.7673 46 1 4.1007 -7.7371 -0.1712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199550977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:02 Heat of formation + Delta-G solvation = -110.171384 kcal Electronic energy + Delta-G solvation = -27541.054039 eV Core-core repulsion = 23658.963718 eV Total energy + Delta-G solvation = -3882.090321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71994 -38.90753 -37.85992 -36.41288 -34.97368 -33.95676 -33.91334 -31.88192 -31.12395 -28.33344 -27.32935 -27.02796 -25.22435 -24.20248 -22.05081 -20.53076 -20.43514 -20.09412 -19.62303 -18.08066 -17.32218 -16.98694 -16.83792 -16.31692 -15.69989 -15.37682 -14.90813 -14.63279 -14.45581 -14.11806 -13.92849 -13.83517 -13.52125 -13.17587 -12.77633 -12.65321 -12.40863 -12.34646 -12.24026 -11.98201 -11.78929 -11.45271 -11.18751 -11.13750 -10.91182 -10.82950 -10.79150 -10.70418 -10.14285 -10.08283 -9.98026 -9.84013 -9.75546 -9.66310 -9.21579 -8.73749 -8.56893 -6.86763 -5.72654 -3.08127 2.31677 2.63734 3.28740 3.41047 3.43424 3.46765 3.49410 4.38976 4.48338 4.53947 4.63246 4.71857 4.84875 4.92038 5.01123 5.18809 5.27077 5.44786 5.48066 5.48162 5.61091 5.65691 5.69879 5.72571 5.78662 5.82095 5.88904 6.08912 6.15972 6.19242 6.21709 6.38212 6.46208 6.60765 6.67746 6.94792 6.97397 7.38496 7.50171 7.73056 7.79690 7.95253 8.20752 8.21995 8.45800 9.17953 9.78653 10.42417 11.38366 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.003657 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.950702 B = 7654.483278 C = 8946.475959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.105 4.105 3 C -0.142 4.142 4 C -0.087 4.087 5 C -0.137 4.137 6 H 0.122 0.878 7 C 0.523 3.477 8 N -0.854 5.854 9 O -0.519 6.519 10 C 0.536 3.464 11 O -0.528 6.528 12 N -0.701 5.701 13 C 0.142 3.858 14 H 0.101 0.899 15 C 0.131 3.869 16 N -0.599 5.599 17 C -0.228 4.228 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.151 3.849 26 C 0.071 3.929 27 H 0.056 0.944 28 O -0.560 6.560 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.401 0.599 39 H 0.403 0.597 40 H 0.395 0.605 41 H 0.051 0.949 42 H 0.022 0.978 43 H 0.253 0.747 44 H 0.062 0.938 45 H 0.048 0.952 46 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 13.435 17.782 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 C -0.199 4.199 4 C -0.125 4.125 5 C -0.161 4.161 6 H 0.140 0.860 7 C 0.306 3.694 8 N -0.419 5.419 9 O -0.393 6.393 10 C 0.320 3.680 11 O -0.404 6.404 12 N -0.350 5.350 13 C 0.037 3.963 14 H 0.119 0.881 15 C 0.003 3.997 16 N -0.327 5.327 17 C -0.356 4.356 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.025 3.975 26 C 0.011 3.989 27 H 0.073 0.927 28 O -0.364 6.364 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.234 0.766 40 H 0.229 0.771 41 H 0.069 0.931 42 H 0.040 0.960 43 H 0.063 0.937 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.246 13.844 16.936 23.043 hybrid contribution -0.743 -0.887 -0.270 1.188 sum -7.989 12.957 16.666 22.571 Atomic orbital electron populations 1.21949 0.95630 1.01405 1.01847 1.21257 0.95195 0.96544 0.99340 1.21765 1.01319 0.95576 1.01286 1.21406 1.02809 0.89520 0.98745 1.21759 1.03564 0.98387 0.92428 0.86017 1.20240 0.81548 0.82141 0.85478 1.43806 1.38007 1.50290 1.09779 1.90889 1.31263 1.31025 1.86107 1.19590 0.82168 0.82210 0.84023 1.90696 1.36125 1.63558 1.50035 1.45760 1.45458 1.09442 1.34311 1.22211 0.97201 0.90920 0.85999 0.88057 1.21840 0.95501 0.92854 0.89461 1.44241 1.74557 1.12120 1.01753 1.19092 1.39879 0.96918 0.79682 0.90187 1.24812 1.01883 0.95432 0.98255 1.69926 1.53393 1.00108 1.33618 0.86064 0.77316 0.77380 0.84807 1.21633 1.21604 1.20528 1.21854 1.00273 0.91833 0.83498 1.23408 0.88159 0.93652 0.93712 0.92650 1.86510 1.49622 1.27780 1.72507 0.92460 0.92829 0.92869 0.88739 0.92494 0.92666 0.93180 0.91195 0.90270 0.77039 0.76565 0.77140 0.93115 0.96039 0.93708 0.92040 0.93394 0.77870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.07 37.16 0.34 -0.84 16 2 C -0.11 -1.04 2.72 -90.62 -0.25 -1.29 16 3 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 4 C -0.09 -0.82 3.77 -26.73 -0.10 -0.92 16 5 C -0.14 -1.44 2.42 -92.92 -0.23 -1.66 16 6 H 0.12 0.92 6.20 -51.93 -0.32 0.60 16 7 C 0.52 5.65 7.20 -10.99 -0.08 5.57 16 8 N -0.85 -4.99 8.76 31.22 0.27 -4.72 16 9 O -0.52 -8.29 16.48 5.56 0.09 -8.20 16 10 C 0.54 8.45 6.27 -10.99 -0.07 8.38 16 11 O -0.53 -10.10 13.87 5.56 0.08 -10.02 16 12 N -0.70 -11.43 4.70 -51.73 -0.24 -11.67 16 13 C 0.14 2.85 3.04 -65.78 -0.20 2.65 16 14 H 0.10 2.35 7.73 -51.93 -0.40 1.95 16 15 C 0.13 2.88 6.93 -2.52 -0.02 2.86 16 16 N -0.60 -15.71 3.39 -170.06 -0.58 -16.29 16 17 C -0.23 -6.47 10.27 -15.06 -0.15 -6.62 16 18 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 19 C -0.01 -0.22 5.46 -17.43 -0.10 -0.31 16 20 N -0.92 -27.12 10.41 55.49 0.58 -26.54 16 21 Si 0.91 22.35 29.56 -169.99 -5.02 17.32 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.15 3.71 5.19 -3.06 -0.02 3.69 16 26 C 0.07 1.40 3.94 -24.89 -0.10 1.30 16 27 H 0.06 0.98 8.00 -51.93 -0.42 0.57 16 28 O -0.56 -10.70 13.40 -35.23 -0.47 -11.17 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.39 6.25 -51.93 -0.32 0.07 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 1.27 6.07 -51.93 -0.32 0.95 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.44 8.00 -51.93 -0.42 0.03 16 37 H 0.08 0.93 7.88 -51.93 -0.41 0.53 16 38 H 0.40 1.06 8.80 -40.82 -0.36 0.70 16 39 H 0.40 2.04 8.93 -40.82 -0.36 1.67 16 40 H 0.40 5.56 8.36 -40.82 -0.34 5.22 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.06 1.62 7.10 -51.92 -0.37 1.25 16 45 H 0.05 1.31 7.72 -51.93 -0.40 0.91 16 46 H 0.37 5.51 9.12 45.56 0.42 5.93 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -36.74 370.65 -6.86 -43.60 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -6.53 Total: 10.20 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -0.62 Total: 11.90 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.03 Total: -59.22 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.30 Total: -29.40 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.74 -6.86 -43.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199550977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.568 kcal (2) G-P(sol) polarization free energy of solvation -36.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds