Wall clock time and date at job start Tue Mar 31 2020 04:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47270 * 2 1 4 4 C 1.52995 * 109.47160 * 120.00009 * 2 1 3 5 5 C 1.53006 * 109.47216 * 65.59125 * 4 2 1 6 6 H 1.09000 * 109.46675 * 307.10565 * 5 4 2 7 7 C 1.50694 * 109.47350 * 187.10284 * 5 4 2 8 8 N 1.34783 * 119.99594 * 66.32287 * 7 5 4 9 9 O 1.21272 * 120.00442 * 246.32150 * 7 5 4 10 10 C 1.50700 * 109.47200 * 67.10034 * 5 4 2 11 11 O 1.21281 * 119.99856 * 0.02562 * 10 5 4 12 12 N 1.34778 * 120.00080 * 180.02562 * 10 5 4 13 13 C 1.46496 * 120.00043 * 180.02562 * 12 10 5 14 14 H 1.08996 * 110.88700 * 37.42694 * 13 12 10 15 15 C 1.54917 * 111.00324 * 273.54681 * 13 12 10 16 16 N 1.47426 * 104.83235 * 204.91667 * 15 13 12 17 17 C 1.36932 * 125.64675 * 204.09112 * 16 15 13 18 18 H 1.08003 * 120.00262 * 5.28039 * 17 16 15 19 19 C 1.38807 * 119.99967 * 185.27373 * 17 16 15 20 20 N 1.31629 * 120.00026 * 5.47309 * 19 17 16 21 21 Si 1.86801 * 120.00190 * 185.46794 * 19 17 16 22 22 H 1.48501 * 109.46994 * 265.00416 * 21 19 17 23 23 H 1.48507 * 109.46930 * 145.00422 * 21 19 17 24 24 H 1.48498 * 109.46887 * 25.00669 * 21 19 17 25 25 C 1.47021 * 108.70011 * 24.35445 * 16 15 13 26 26 C 1.54334 * 107.26771 * 358.58756 * 25 16 15 27 27 H 1.09001 * 110.51228 * 96.45164 * 26 25 16 28 28 O 1.42898 * 110.99988 * 219.59713 * 26 25 16 29 29 H 1.09000 * 109.47153 * 64.57433 * 1 2 3 30 30 H 1.08998 * 109.47202 * 184.57302 * 1 2 3 31 31 H 1.09004 * 109.46850 * 304.57648 * 1 2 3 32 32 H 1.09004 * 109.47318 * 239.99964 * 2 1 3 33 33 H 1.08995 * 109.47294 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47143 * 300.00353 * 3 2 1 35 35 H 1.09003 * 109.47284 * 60.00207 * 3 2 1 36 36 H 1.08997 * 109.47487 * 305.58923 * 4 2 1 37 37 H 1.09002 * 109.47621 * 185.58851 * 4 2 1 38 38 H 0.97002 * 120.00566 * 4.99817 * 8 7 5 39 39 H 0.97003 * 119.99747 * 184.99070 * 8 7 5 40 40 H 0.97004 * 119.99601 * 0.02562 * 12 10 5 41 41 H 1.09006 * 110.36435 * 86.07817 * 15 13 12 42 42 H 1.08996 * 110.45798 * 323.80368 * 15 13 12 43 43 H 0.96993 * 120.00074 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.87931 * 118.13272 * 25 16 15 45 45 H 1.09005 * 109.88390 * 239.29157 * 25 16 15 46 46 H 0.96698 * 114.00204 * 293.78052 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6480 -2.1986 1.1809 6 1 0.5759 -2.2821 1.0028 7 6 1.9946 -2.8711 2.4842 8 7 1.3456 -2.5261 3.6140 9 8 2.8574 -3.7227 2.5165 10 6 2.3974 -2.8658 0.0565 11 8 3.1694 -2.2230 -0.6230 12 7 2.2097 -4.1767 -0.1940 13 6 2.9387 -4.8254 -1.2867 14 1 3.9540 -4.4362 -1.3613 15 6 2.1829 -4.6664 -2.6296 16 7 2.6337 -5.8030 -3.4532 17 6 2.6238 -5.8504 -4.8217 18 1 2.3442 -4.9758 -5.3904 19 6 2.9732 -7.0225 -5.4781 20 7 3.2094 -8.1181 -4.7877 21 14 3.1082 -7.0452 -7.3411 22 1 1.8272 -7.5186 -7.9244 23 1 4.2051 -7.9604 -7.7468 24 1 3.3996 -5.6747 -7.8329 25 6 3.0896 -6.8795 -2.5617 26 6 2.9444 -6.3671 -1.1132 27 1 2.0052 -6.7100 -0.6792 28 8 4.0514 -6.7814 -0.3101 29 1 -0.3633 0.4412 -0.9281 30 1 -0.3633 -1.0244 0.0819 31 1 -0.3633 0.5832 0.8462 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.5973 -0.2685 2.1364 37 1 3.1254 -0.6354 1.3007 38 1 0.6069 -1.8985 3.5767 39 1 1.6173 -2.9054 4.4644 40 1 1.5920 -4.6907 0.3493 41 1 2.4503 -3.7231 -3.1060 42 1 1.1061 -4.7176 -2.4692 43 1 3.4532 -8.9372 -5.2464 44 1 2.4733 -7.7669 -2.7067 45 1 4.1342 -7.1136 -2.7673 46 1 4.1007 -7.7371 -0.1712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199550977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:01 Heat of formation + Delta-G solvation = -142.817877 kcal Electronic energy + Delta-G solvation = -27542.469698 eV Core-core repulsion = 23658.963718 eV Total energy + Delta-G solvation = -3883.505980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.79795 -40.21335 -39.29307 -37.32139 -36.70883 -35.50839 -34.68435 -33.68874 -32.19110 -30.16490 -28.79461 -27.95329 -26.62730 -25.66064 -23.23406 -22.32617 -21.83025 -21.15343 -20.70959 -19.16947 -18.86612 -18.27505 -18.12564 -17.46968 -17.25301 -16.56549 -16.25673 -15.86817 -15.78184 -15.51122 -15.30198 -14.91495 -14.64245 -14.50879 -14.45337 -14.16670 -13.79389 -13.54832 -13.22724 -13.16809 -13.04004 -12.93783 -12.77447 -12.73123 -12.55008 -12.11642 -11.90537 -11.89527 -11.61951 -11.53333 -11.51021 -11.12518 -10.96090 -10.78786 -10.70639 -10.65196 -10.11838 -8.98335 -7.89448 -5.28329 1.44310 1.45096 1.47350 1.54656 1.56715 2.03591 2.47151 2.61485 3.11069 3.29890 3.42153 3.52383 3.75323 3.86178 3.89171 4.01141 4.10381 4.14572 4.20296 4.25525 4.41512 4.49570 4.53519 4.77570 4.80195 4.86151 4.90271 4.97465 5.01539 5.11308 5.18017 5.34384 5.38618 5.41322 5.44633 5.54572 5.61342 5.63993 5.89249 6.11558 6.40334 6.51152 6.83400 7.02278 7.21224 7.31622 7.67134 8.30565 9.19767 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016555 B = 0.003657 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.950702 B = 7654.483278 C = 8946.475959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.125 4.125 6 H 0.162 0.838 7 C 0.526 3.474 8 N -0.823 5.823 9 O -0.578 6.578 10 C 0.526 3.474 11 O -0.569 6.569 12 N -0.694 5.694 13 C 0.156 3.844 14 H 0.064 0.936 15 C 0.136 3.864 16 N -0.621 5.621 17 C -0.250 4.250 18 H 0.081 0.919 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.981 3.019 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.272 1.272 25 C 0.161 3.839 26 C 0.091 3.909 27 H 0.090 0.910 28 O -0.569 6.569 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.049 0.951 38 H 0.422 0.578 39 H 0.412 0.588 40 H 0.410 0.590 41 H 0.036 0.964 42 H 0.043 0.957 43 H 0.250 0.750 44 H 0.040 0.960 45 H 0.008 0.992 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 14.760 19.821 27.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.198 4.198 4 C -0.120 4.120 5 C -0.149 4.149 6 H 0.179 0.821 7 C 0.309 3.691 8 N -0.388 5.388 9 O -0.456 6.456 10 C 0.313 3.687 11 O -0.447 6.447 12 N -0.344 5.344 13 C 0.049 3.951 14 H 0.082 0.918 15 C 0.009 3.991 16 N -0.348 5.348 17 C -0.378 4.378 18 H 0.099 0.901 19 C -0.254 4.254 20 N -0.596 5.596 21 Si 0.809 3.191 22 H -0.207 1.207 23 H -0.219 1.219 24 H -0.197 1.197 25 C 0.035 3.965 26 C 0.030 3.970 27 H 0.107 0.893 28 O -0.377 6.377 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.132 0.868 37 H 0.068 0.932 38 H 0.254 0.746 39 H 0.245 0.755 40 H 0.246 0.754 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.026 0.974 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -9.860 15.210 19.050 26.295 hybrid contribution 0.063 -1.231 -0.863 1.505 sum -9.797 13.978 18.187 24.943 Atomic orbital electron populations 1.21932 0.93388 1.02378 1.02780 1.21200 0.97038 0.96545 0.97731 1.21758 1.00255 0.95330 1.02493 1.21434 1.01316 0.88966 1.00318 1.21749 1.04773 0.98099 0.90255 0.82099 1.20195 0.81052 0.81442 0.86382 1.43534 1.37294 1.49391 1.08621 1.90880 1.34042 1.33825 1.86901 1.20580 0.81773 0.81657 0.84696 1.90688 1.37939 1.64359 1.51737 1.45607 1.45402 1.09956 1.33415 1.21680 0.95508 0.91361 0.86564 0.91825 1.21888 0.96552 0.90873 0.89801 1.44508 1.74822 1.13681 1.01819 1.19452 1.40033 0.97184 0.81152 0.90068 1.25667 1.01777 0.95105 1.02810 1.70123 1.53942 1.00389 1.35124 0.85028 0.77238 0.77482 0.79354 1.20690 1.21867 1.19669 1.21637 0.97227 0.91218 0.86389 1.23145 0.89763 0.93061 0.90984 0.89252 1.86478 1.49565 1.29863 1.71756 0.93189 0.92101 0.90033 0.93076 0.94245 0.92779 0.90615 0.86807 0.93250 0.74598 0.75527 0.75416 0.94605 0.93972 0.94098 0.94148 0.97392 0.75570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.07 71.98 0.65 -1.16 16 2 C -0.11 -1.97 2.72 -10.80 -0.03 -2.00 16 3 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 4 C -0.08 -1.37 3.77 30.59 0.12 -1.26 16 5 C -0.12 -2.32 2.42 -12.29 -0.03 -2.35 16 6 H 0.16 1.72 6.20 -2.39 -0.01 1.71 16 7 C 0.53 9.99 7.20 87.65 0.63 10.63 16 8 N -0.82 -6.23 8.76 -173.54 -1.52 -7.75 16 9 O -0.58 -17.82 16.48 -3.00 -0.05 -17.87 16 10 C 0.53 16.52 6.27 87.66 0.55 17.07 16 11 O -0.57 -22.72 13.87 -3.03 -0.04 -22.76 16 12 N -0.69 -22.26 4.70 -435.97 -2.05 -24.31 16 13 C 0.16 6.38 3.04 46.38 0.14 6.53 16 14 H 0.06 3.11 7.73 -2.39 -0.02 3.09 16 15 C 0.14 6.09 6.93 86.86 0.60 6.69 16 16 N -0.62 -33.53 3.39 -691.94 -2.35 -35.88 16 17 C -0.25 -14.54 10.27 84.03 0.86 -13.68 16 18 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 19 C -0.06 -3.49 5.46 84.86 0.46 -3.02 16 20 N -0.95 -57.18 10.41 21.65 0.23 -56.96 16 21 Si 0.98 46.60 29.56 68.60 2.03 48.62 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 25 C 0.16 8.18 5.19 86.73 0.45 8.63 16 26 C 0.09 3.59 3.94 31.78 0.13 3.72 16 27 H 0.09 2.99 8.00 -2.39 -0.02 2.97 16 28 O -0.57 -21.72 13.40 -148.98 -2.00 -23.72 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.65 6.25 -2.39 -0.01 0.63 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 1.41 6.07 -2.38 -0.01 1.39 16 33 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.90 8.00 -2.39 -0.02 0.88 16 37 H 0.05 1.14 7.88 -2.39 -0.02 1.13 16 38 H 0.42 -0.08 8.80 -92.71 -0.82 -0.89 16 39 H 0.41 2.60 8.93 -92.71 -0.83 1.77 16 40 H 0.41 10.74 8.36 -92.71 -0.78 9.97 16 41 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.04 2.20 7.10 -2.38 -0.02 2.18 16 45 H 0.01 0.45 7.72 -2.38 -0.02 0.44 16 46 H 0.39 11.38 9.12 -74.06 -0.68 10.71 16 Total: -1.00 -85.56 370.65 -2.62 -88.18 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -2.06 Total: 24.33 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 5.19 Total: 28.11 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.69 Total: -124.89 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -2.09 Total: -64.34 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -85.56 -2.62 -88.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199550977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.641 kcal (2) G-P(sol) polarization free energy of solvation -85.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds