Wall clock time and date at job start Tue Mar 31 2020 04:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00312 * 2 1 4 4 N 1.34784 * 120.00292 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00075 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47049 * 324.99133 * 5 4 2 7 7 C 1.52997 * 109.47188 * 85.00024 * 5 4 2 8 8 C 1.50706 * 109.46582 * 204.99875 * 5 4 2 9 9 O 1.21279 * 120.00072 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99762 * 180.02562 * 8 5 4 11 11 C 1.47515 * 118.75541 * 359.97438 * 10 8 5 12 12 C 1.53576 * 111.02869 * 221.60749 * 11 10 8 13 13 C 1.51535 * 109.58222 * 39.97698 * 12 11 10 14 14 O 1.42146 * 108.75880 * 268.60227 * 13 12 11 15 15 C 1.38017 * 119.43976 * 87.22911 * 14 13 12 16 16 H 1.09008 * 109.46808 * 56.57104 * 15 14 13 17 17 C 1.53004 * 109.47286 * 176.56454 * 15 14 13 18 18 N 1.46501 * 109.47260 * 300.00520 * 17 15 14 19 19 C 1.36930 * 120.00507 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99518 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00423 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99997 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00019 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47155 * 90.00555 * 23 21 19 25 25 H 1.48501 * 109.47424 * 210.00515 * 23 21 19 26 26 H 1.48504 * 109.47370 * 330.00321 * 23 21 19 27 27 C 1.45121 * 118.75707 * 179.73024 * 10 8 5 28 28 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46803 * 300.00404 * 1 2 3 30 30 H 1.08998 * 109.47211 * 59.99874 * 1 2 3 31 31 H 0.96996 * 119.99132 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.47153 * 299.99573 * 7 5 4 33 33 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 34 34 H 1.09004 * 109.47261 * 59.99745 * 7 5 4 35 35 H 1.08996 * 109.16711 * 342.00511 * 11 10 8 36 36 H 1.09007 * 109.16457 * 101.21300 * 11 10 8 37 37 H 1.08994 * 109.45390 * 160.01330 * 12 11 10 38 38 H 1.09001 * 109.45233 * 279.94715 * 12 11 10 39 39 H 1.09001 * 109.58637 * 28.38759 * 13 12 11 40 40 H 1.08994 * 109.58840 * 148.66989 * 13 12 11 41 41 H 1.08998 * 109.46871 * 59.99637 * 17 15 14 42 42 H 1.08997 * 109.47230 * 180.02562 * 17 15 14 43 43 H 0.97007 * 119.99990 * 359.97438 * 18 17 15 44 44 H 0.97008 * 120.00156 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.46144 * 210.75788 * 27 10 8 46 46 H 1.08995 * 109.45867 * 330.71610 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0094 -0.3251 -0.5888 7 6 4.1554 -1.0424 1.4373 8 6 4.1484 -2.4546 -0.6011 9 8 3.3604 -3.2895 -0.9919 10 7 5.4735 -2.6779 -0.7044 11 6 6.4074 -1.6434 -0.2208 12 6 7.5866 -1.4695 -1.1892 13 6 7.0865 -1.5467 -2.6176 14 8 7.1646 -2.8963 -3.0569 15 6 6.1085 -3.7509 -2.8140 16 1 5.1971 -3.3331 -3.2419 17 6 6.3953 -5.1109 -3.4538 18 7 6.5663 -4.9442 -4.8993 19 6 6.8325 -6.0320 -5.6872 20 1 6.9169 -7.0128 -5.2430 21 6 6.9939 -5.8741 -7.0568 22 7 7.2494 -6.9198 -7.8142 23 14 6.8473 -4.1779 -7.8252 24 1 8.1814 -3.5258 -7.8438 25 1 6.3396 -4.3061 -9.2149 26 1 5.9042 -3.3531 -7.0279 27 6 5.9277 -3.9293 -1.2821 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6959 -2.0072 -0.0005 32 1 3.7919 -0.1113 1.8721 33 1 5.2454 -1.0428 1.4377 34 1 3.7918 -1.8846 2.0261 35 1 5.8762 -0.6960 -0.1300 36 1 6.7882 -1.9345 0.7582 37 1 8.0549 -0.4998 -1.0205 38 1 8.3172 -2.2599 -1.0172 39 1 6.0516 -1.2074 -2.6612 40 1 7.7050 -0.9158 -3.2559 41 1 7.3067 -5.5286 -3.0261 42 1 5.5611 -5.7857 -3.2624 43 1 6.4901 -4.0633 -5.2983 44 1 7.3618 -6.8096 -8.7714 45 1 6.8802 -4.2118 -0.8337 46 1 5.1900 -4.7078 -1.0878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199763387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:28 Heat of formation + Delta-G solvation = -85.214522 kcal Electronic energy + Delta-G solvation = -27512.672387 eV Core-core repulsion = 23631.664277 eV Total energy + Delta-G solvation = -3881.008111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19608 -39.82674 -38.63220 -36.05252 -35.34981 -34.79623 -32.95977 -32.01411 -31.17095 -29.59854 -28.88451 -26.80242 -25.91977 -24.23847 -22.33248 -21.76269 -21.09425 -20.82225 -19.69992 -18.03354 -17.67935 -17.16937 -16.65136 -16.57224 -16.10315 -15.90002 -15.60162 -14.97470 -14.57076 -14.38553 -14.31582 -14.04082 -13.73918 -13.55518 -13.28643 -13.00930 -12.95268 -12.69798 -12.61371 -12.56021 -12.31266 -12.05086 -12.01466 -11.89278 -11.49283 -11.22574 -10.95314 -10.81604 -10.39355 -10.29898 -10.11954 -10.02641 -9.58715 -9.54824 -9.51917 -8.85210 -8.76993 -7.16260 -5.71060 -3.05445 2.18432 2.28606 2.43364 2.97730 3.44065 3.48645 3.50444 3.77933 3.92155 4.39113 4.46078 4.54508 4.60454 4.66129 4.66662 4.77697 4.83822 5.00296 5.04990 5.08712 5.13882 5.20065 5.29159 5.30874 5.34409 5.44578 5.46829 5.58817 5.66465 5.67701 5.76126 5.84068 5.92521 5.95621 5.97988 6.28295 6.54577 6.66105 6.94059 7.12859 7.75722 7.81705 7.84849 8.04872 8.48042 9.27794 10.00393 10.21196 11.47430 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.003390 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.347041 B = 8257.838678 C = 8814.924276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.515 3.485 3 O -0.550 6.550 4 N -0.713 5.713 5 C 0.123 3.877 6 H 0.113 0.887 7 C -0.172 4.172 8 C 0.505 3.495 9 O -0.527 6.527 10 N -0.602 5.602 11 C 0.097 3.903 12 C -0.168 4.168 13 C 0.071 3.929 14 O -0.370 6.370 15 C 0.084 3.916 16 H 0.051 0.949 17 C 0.171 3.829 18 N -0.750 5.750 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.936 5.936 23 Si 0.887 3.113 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.081 3.919 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.411 0.589 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.036 0.964 42 H 0.043 0.957 43 H 0.364 0.636 44 H 0.259 0.741 45 H 0.088 0.912 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 15.510 22.908 28.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.302 3.698 3 O -0.428 6.428 4 N -0.367 5.367 5 C 0.014 3.986 6 H 0.130 0.870 7 C -0.230 4.230 8 C 0.291 3.709 9 O -0.403 6.403 10 N -0.335 5.335 11 C -0.025 4.025 12 C -0.206 4.206 13 C -0.006 4.006 14 O -0.288 6.288 15 C 0.024 3.976 16 H 0.069 0.931 17 C 0.043 3.957 18 N -0.395 5.395 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.584 5.584 23 Si 0.717 3.283 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.042 4.042 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.249 0.751 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.061 0.939 43 H 0.197 0.803 44 H 0.069 0.931 45 H 0.106 0.894 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.327 15.496 22.545 28.321 hybrid contribution -0.468 0.895 -0.473 1.115 sum -7.794 16.391 22.072 28.576 Atomic orbital electron populations 1.21835 0.91092 1.04580 1.05426 1.20869 0.90815 0.83075 0.74991 1.90720 1.70721 1.31366 1.49989 1.45930 1.05645 1.09889 1.75274 1.20749 0.82415 0.96912 0.98499 0.86953 1.22429 1.02683 1.03620 0.94260 1.20675 0.82785 0.88506 0.78933 1.90732 1.54686 1.46374 1.48533 1.47858 1.05392 1.19053 1.61247 1.22336 0.91405 0.91112 0.97607 1.22530 0.98063 1.03974 0.96059 1.22143 1.00460 0.84096 0.93870 1.86424 1.42829 1.19846 1.79724 1.22428 0.89897 0.92495 0.92748 0.93139 1.20593 0.99091 0.90662 0.85335 1.42550 1.87693 1.07327 1.01960 1.19058 1.40320 0.88564 0.89145 0.89184 1.24641 1.01840 0.96696 0.96004 1.69707 1.55715 1.28137 1.04853 0.86505 0.77919 0.85354 0.78513 1.21014 1.21846 1.20498 1.22551 1.01491 0.85483 0.94677 0.90292 0.88592 0.88473 0.75131 0.90724 0.89902 0.91648 0.89339 0.90719 0.89377 0.89615 0.93600 0.89116 0.94650 0.93937 0.80266 0.93120 0.89370 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.39 36.01 0.37 -0.61 16 2 C 0.51 4.99 7.90 -10.98 -0.09 4.90 16 3 O -0.55 -7.34 16.76 5.56 0.09 -7.25 16 4 N -0.71 -6.58 4.95 -54.93 -0.27 -6.85 16 5 C 0.12 1.16 2.16 -69.08 -0.15 1.01 16 6 H 0.11 1.13 6.85 -51.93 -0.36 0.77 16 7 C -0.17 -1.21 9.00 37.16 0.33 -0.88 16 8 C 0.50 5.92 7.11 -10.98 -0.08 5.84 16 9 O -0.53 -7.92 15.27 5.56 0.08 -7.84 16 10 N -0.60 -6.43 2.18 -172.16 -0.38 -6.80 16 11 C 0.10 0.73 4.46 -3.19 -0.01 0.71 16 12 C -0.17 -1.40 5.79 -27.17 -0.16 -1.56 16 13 C 0.07 0.85 6.37 36.42 0.23 1.08 16 14 O -0.37 -6.06 9.19 -26.54 -0.24 -6.30 16 15 C 0.08 1.40 2.74 -25.52 -0.07 1.33 16 16 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 17 C 0.17 3.45 5.95 -4.04 -0.02 3.42 16 18 N -0.75 -18.91 5.29 -59.91 -0.32 -19.22 16 19 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 20 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 21 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 22 N -0.94 -30.16 13.97 55.49 0.78 -29.39 16 23 Si 0.89 23.18 27.73 -169.99 -4.71 18.46 16 24 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 27 C 0.08 1.04 4.90 -3.57 -0.02 1.02 16 28 H 0.08 0.32 7.91 -51.93 -0.41 -0.09 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 3.48 7.63 -40.82 -0.31 3.17 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.45 4.61 -51.93 -0.24 0.21 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.55 4.96 -51.93 -0.26 0.29 16 36 H 0.07 0.42 7.55 -51.93 -0.39 0.03 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.79 8.01 -51.93 -0.42 0.37 16 39 H 0.05 0.56 7.40 -51.93 -0.38 0.17 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.36 9.20 5.39 -40.82 -0.22 8.98 16 44 H 0.26 7.92 8.31 -40.82 -0.34 7.59 16 45 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 46 H 0.10 1.31 7.28 -51.93 -0.38 0.93 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -37.30 364.17 -6.57 -43.88 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.18 Total: 6.78 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 0.09 Total: 9.04 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.19 Total: -62.26 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -0.07 Total: -21.39 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.71 Total: 18.46 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -37.30 -6.57 -43.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199763387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.337 kcal (2) G-P(sol) polarization free energy of solvation -37.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds