Wall clock time and date at job start Tue Mar 31 2020 04:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 120.00312 * 2 1 4 4 N 1.34784 * 120.00292 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00075 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47049 * 324.99133 * 5 4 2 7 7 C 1.52997 * 109.47188 * 85.00024 * 5 4 2 8 8 C 1.50706 * 109.46582 * 204.99875 * 5 4 2 9 9 O 1.21279 * 120.00072 * 0.02562 * 8 5 4 10 10 N 1.34777 * 119.99762 * 180.02562 * 8 5 4 11 11 C 1.47515 * 118.75541 * 359.97438 * 10 8 5 12 12 C 1.53576 * 111.02869 * 221.60749 * 11 10 8 13 13 C 1.51535 * 109.58222 * 39.97698 * 12 11 10 14 14 O 1.42146 * 108.75880 * 268.60227 * 13 12 11 15 15 C 1.38017 * 119.43976 * 87.22911 * 14 13 12 16 16 H 1.09008 * 109.46808 * 56.57104 * 15 14 13 17 17 C 1.53004 * 109.47286 * 176.56454 * 15 14 13 18 18 N 1.46501 * 109.47260 * 300.00520 * 17 15 14 19 19 C 1.36930 * 120.00507 * 180.02562 * 18 17 15 20 20 H 1.08007 * 119.99518 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00423 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99997 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00019 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47155 * 90.00555 * 23 21 19 25 25 H 1.48501 * 109.47424 * 210.00515 * 23 21 19 26 26 H 1.48504 * 109.47370 * 330.00321 * 23 21 19 27 27 C 1.45121 * 118.75707 * 179.73024 * 10 8 5 28 28 H 1.08999 * 109.46937 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46803 * 300.00404 * 1 2 3 30 30 H 1.08998 * 109.47211 * 59.99874 * 1 2 3 31 31 H 0.96996 * 119.99132 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.47153 * 299.99573 * 7 5 4 33 33 H 1.09001 * 109.46832 * 179.97438 * 7 5 4 34 34 H 1.09004 * 109.47261 * 59.99745 * 7 5 4 35 35 H 1.08996 * 109.16711 * 342.00511 * 11 10 8 36 36 H 1.09007 * 109.16457 * 101.21300 * 11 10 8 37 37 H 1.08994 * 109.45390 * 160.01330 * 12 11 10 38 38 H 1.09001 * 109.45233 * 279.94715 * 12 11 10 39 39 H 1.09001 * 109.58637 * 28.38759 * 13 12 11 40 40 H 1.08994 * 109.58840 * 148.66989 * 13 12 11 41 41 H 1.08998 * 109.46871 * 59.99637 * 17 15 14 42 42 H 1.08997 * 109.47230 * 180.02562 * 17 15 14 43 43 H 0.97007 * 119.99990 * 359.97438 * 18 17 15 44 44 H 0.97008 * 120.00156 * 179.97438 * 22 21 19 45 45 H 1.09000 * 109.46144 * 210.75788 * 27 10 8 46 46 H 1.08995 * 109.45867 * 330.71610 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0094 -0.3251 -0.5888 7 6 4.1554 -1.0424 1.4373 8 6 4.1484 -2.4546 -0.6011 9 8 3.3604 -3.2895 -0.9919 10 7 5.4735 -2.6779 -0.7044 11 6 6.4074 -1.6434 -0.2208 12 6 7.5866 -1.4695 -1.1892 13 6 7.0865 -1.5467 -2.6176 14 8 7.1646 -2.8963 -3.0569 15 6 6.1085 -3.7509 -2.8140 16 1 5.1971 -3.3331 -3.2419 17 6 6.3953 -5.1109 -3.4538 18 7 6.5663 -4.9442 -4.8993 19 6 6.8325 -6.0320 -5.6872 20 1 6.9169 -7.0128 -5.2430 21 6 6.9939 -5.8741 -7.0568 22 7 7.2494 -6.9198 -7.8142 23 14 6.8473 -4.1779 -7.8252 24 1 8.1814 -3.5258 -7.8438 25 1 6.3396 -4.3061 -9.2149 26 1 5.9042 -3.3531 -7.0279 27 6 5.9277 -3.9293 -1.2821 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6959 -2.0072 -0.0005 32 1 3.7919 -0.1113 1.8721 33 1 5.2454 -1.0428 1.4377 34 1 3.7918 -1.8846 2.0261 35 1 5.8762 -0.6960 -0.1300 36 1 6.7882 -1.9345 0.7582 37 1 8.0549 -0.4998 -1.0205 38 1 8.3172 -2.2599 -1.0172 39 1 6.0516 -1.2074 -2.6612 40 1 7.7050 -0.9158 -3.2559 41 1 7.3067 -5.5286 -3.0261 42 1 5.5611 -5.7857 -3.2624 43 1 6.4901 -4.0633 -5.2983 44 1 7.3618 -6.8096 -8.7714 45 1 6.8802 -4.2118 -0.8337 46 1 5.1900 -4.7078 -1.0878 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199763387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:28 Heat of formation + Delta-G solvation = -114.287168 kcal Electronic energy + Delta-G solvation = -27513.933072 eV Core-core repulsion = 23631.664277 eV Total energy + Delta-G solvation = -3882.268795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09160 -40.70136 -39.68329 -37.16936 -36.43971 -36.15912 -34.36266 -33.04532 -32.70713 -30.58607 -29.79983 -27.81231 -27.06408 -25.40968 -23.91377 -22.80430 -22.38755 -21.58745 -20.54682 -19.82146 -18.82858 -18.08158 -17.74632 -17.48253 -17.09968 -16.91467 -16.42084 -16.37782 -16.03434 -15.50197 -15.28476 -14.98807 -14.91474 -14.75926 -14.57317 -14.18237 -13.90924 -13.85016 -13.58404 -13.38994 -13.34200 -13.16507 -12.88737 -12.85599 -12.69349 -12.60681 -12.39538 -12.13667 -12.01265 -11.84602 -11.50844 -11.10935 -11.04242 -10.95743 -10.62440 -10.30821 -9.75809 -9.33383 -8.05500 -5.38284 1.31010 1.34267 1.37454 1.44652 1.50693 1.65528 2.26799 2.45603 2.64457 3.13970 3.26167 3.44054 3.74065 3.81443 3.90171 3.94569 4.00336 4.01164 4.03663 4.19988 4.23546 4.38499 4.45049 4.45838 4.59238 4.63641 4.64275 4.68034 4.72730 4.79269 4.84666 5.03517 5.04687 5.09260 5.12906 5.15505 5.25500 5.41538 5.71283 6.09329 6.18380 6.42778 6.66283 6.87715 7.04218 7.12085 7.80302 7.99915 9.16027 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.016809 B = 0.003390 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.347041 B = 8257.838678 C = 8814.924276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.510 3.490 3 O -0.591 6.591 4 N -0.712 5.712 5 C 0.125 3.875 6 H 0.108 0.892 7 C -0.163 4.163 8 C 0.503 3.497 9 O -0.567 6.567 10 N -0.599 5.599 11 C 0.091 3.909 12 C -0.159 4.159 13 C 0.061 3.939 14 O -0.396 6.396 15 C 0.099 3.901 16 H 0.026 0.974 17 C 0.165 3.835 18 N -0.754 5.754 19 C -0.235 4.235 20 H 0.061 0.939 21 C -0.062 4.062 22 N -0.982 5.982 23 Si 0.956 3.044 24 H -0.275 1.275 25 H -0.291 1.291 26 H -0.264 1.264 27 C 0.094 3.906 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.415 0.585 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.041 0.959 43 H 0.365 0.635 44 H 0.259 0.741 45 H 0.108 0.892 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.470 17.962 25.002 31.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.300 3.700 3 O -0.472 6.472 4 N -0.366 5.366 5 C 0.016 3.984 6 H 0.126 0.874 7 C -0.221 4.221 8 C 0.290 3.710 9 O -0.446 6.446 10 N -0.331 5.331 11 C -0.029 4.029 12 C -0.197 4.197 13 C -0.015 4.015 14 O -0.315 6.315 15 C 0.039 3.961 16 H 0.044 0.956 17 C 0.039 3.961 18 N -0.400 5.400 19 C -0.365 4.365 20 H 0.079 0.921 21 C -0.253 4.253 22 N -0.632 5.632 23 Si 0.784 3.216 24 H -0.201 1.201 25 H -0.218 1.218 26 H -0.189 1.189 27 C -0.031 4.031 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.253 0.747 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.138 0.862 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.117 0.883 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.198 0.802 44 H 0.068 0.932 45 H 0.127 0.873 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.243 17.970 24.703 31.395 hybrid contribution -0.467 0.087 -1.082 1.182 sum -7.710 18.057 23.621 30.716 Atomic orbital electron populations 1.21882 0.88111 1.06155 1.06256 1.21545 0.92271 0.82359 0.73841 1.90696 1.71815 1.32628 1.52041 1.46028 1.05772 1.10095 1.74736 1.20797 0.82695 0.95078 0.99803 0.87416 1.22392 1.03947 1.03506 0.92236 1.21105 0.82812 0.88760 0.78287 1.90714 1.55776 1.47815 1.50278 1.47919 1.05713 1.18962 1.60467 1.22673 0.90743 0.90926 0.98579 1.22468 0.98146 1.05647 0.93420 1.22443 1.00643 0.81813 0.96573 1.86351 1.42511 1.21796 1.80854 1.22047 0.88776 0.90428 0.94840 0.95617 1.20755 0.99007 0.93491 0.82896 1.42582 1.87524 1.06090 1.03787 1.19073 1.38999 0.88702 0.89767 0.92079 1.25451 1.02379 1.00881 0.96607 1.69873 1.57582 1.30648 1.05138 0.85391 0.78400 0.80447 0.77385 1.20137 1.21774 1.18934 1.22264 1.02245 0.86455 0.92103 0.88391 0.87167 0.88080 0.74700 0.91015 0.87788 0.91396 0.87672 0.87656 0.86151 0.90048 0.94163 0.88295 0.94231 0.94115 0.80206 0.93212 0.87349 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.39 71.24 0.74 -0.87 16 2 C 0.51 9.31 7.90 87.66 0.69 10.01 16 3 O -0.59 -15.31 16.76 -3.03 -0.05 -15.36 16 4 N -0.71 -12.34 4.95 -446.09 -2.21 -14.55 16 5 C 0.12 2.15 2.16 44.25 0.10 2.25 16 6 H 0.11 1.99 6.85 -2.39 -0.02 1.98 16 7 C -0.16 -1.86 9.00 71.98 0.65 -1.21 16 8 C 0.50 11.13 7.11 87.66 0.62 11.75 16 9 O -0.57 -16.91 15.27 -3.03 -0.05 -16.96 16 10 N -0.60 -11.50 2.18 -816.97 -1.78 -13.28 16 11 C 0.09 1.01 4.46 86.38 0.39 1.40 16 12 C -0.16 -2.06 5.79 30.31 0.18 -1.89 16 13 C 0.06 1.33 6.37 71.50 0.46 1.78 16 14 O -0.40 -12.48 9.19 -117.89 -1.08 -13.57 16 15 C 0.10 3.24 2.74 31.38 0.09 3.33 16 16 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 17 C 0.17 6.71 5.95 86.38 0.51 7.23 16 18 N -0.75 -38.29 5.29 -343.45 -1.82 -40.11 16 19 C -0.23 -14.10 10.47 84.03 0.88 -13.22 16 20 H 0.06 3.94 8.06 -2.91 -0.02 3.92 16 21 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 22 N -0.98 -64.74 13.97 21.65 0.30 -64.44 16 23 Si 0.96 48.24 27.73 68.60 1.90 50.14 16 24 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 26 H -0.26 -12.52 6.52 99.48 0.65 -11.87 16 27 C 0.09 2.27 4.90 87.42 0.43 2.70 16 28 H 0.10 0.57 7.91 -2.39 -0.02 0.56 16 29 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.42 6.63 7.63 -92.71 -0.71 5.93 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 0.71 4.61 -2.39 -0.01 0.70 16 34 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.11 0.87 4.96 -2.39 -0.01 0.86 16 36 H 0.11 0.64 7.55 -2.38 -0.02 0.62 16 37 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.20 8.01 -2.39 -0.02 1.18 16 39 H 0.04 0.91 7.40 -2.39 -0.02 0.90 16 40 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.37 18.25 5.39 -92.70 -0.50 17.76 16 44 H 0.26 16.19 8.31 -92.70 -0.77 15.42 16 45 H 0.11 2.20 8.11 -2.39 -0.02 2.18 16 46 H 0.09 2.31 7.28 -2.39 -0.02 2.29 16 Total: -1.00 -83.27 364.17 1.15 -82.12 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -0.26 Total: 26.06 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 6.19 Total: 19.93 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -5.51 Total: -132.38 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -1.18 Total: -45.88 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.90 Total: 50.14 kcal Total: -83.27 1.15 -82.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199763387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.163 kcal (2) G-P(sol) polarization free energy of solvation -83.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds