Wall clock time and date at job start Tue Mar 31 2020 04:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99795 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99566 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46835 * 180.02562 * 6 5 3 8 8 O 1.21273 * 119.99963 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.47507 * 118.75793 * 359.97438 * 9 7 6 11 11 C 1.53574 * 111.02924 * 138.35205 * 10 9 7 12 12 C 1.51542 * 109.58300 * 320.02632 * 11 10 9 13 13 O 1.42145 * 108.75665 * 91.39536 * 12 11 10 14 14 C 1.38021 * 119.44277 * 272.77098 * 13 12 11 15 15 H 1.09002 * 109.47165 * 303.43459 * 14 13 12 16 16 C 1.52999 * 109.47150 * 183.43344 * 14 13 12 17 17 N 1.46500 * 109.47116 * 65.00193 * 16 14 13 18 18 C 1.36936 * 119.99582 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00275 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99859 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99950 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00448 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46987 * 59.99836 * 22 20 18 24 24 H 1.48497 * 109.47361 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46985 * 300.00156 * 22 20 18 26 26 C 1.45119 * 118.75774 * 179.73174 * 9 7 6 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 32 32 H 0.96995 * 120.00011 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.47487 * 300.00114 * 6 5 3 34 34 H 1.09002 * 109.47182 * 60.00342 * 6 5 3 35 35 H 1.08993 * 109.17218 * 258.75286 * 10 9 7 36 36 H 1.08998 * 109.16797 * 18.00727 * 10 9 7 37 37 H 1.08996 * 109.44969 * 80.05722 * 11 10 9 38 38 H 1.08998 * 109.45494 * 199.99384 * 11 10 9 39 39 H 1.08999 * 109.59196 * 211.18233 * 12 11 10 40 40 H 1.09002 * 109.58217 * 331.61765 * 12 11 10 41 41 H 1.09001 * 109.47013 * 185.00167 * 16 14 13 42 42 H 1.09001 * 109.46831 * 304.99524 * 16 14 13 43 43 H 0.96991 * 120.00120 * 359.97438 * 17 16 14 44 44 H 0.96999 * 120.00615 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.46096 * 29.32637 * 26 9 7 46 46 H 1.09001 * 109.45823 * 149.28198 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8457 3.0482 0.0011 7 6 5.3528 3.0482 0.0010 8 8 5.9591 1.9979 0.0000 9 7 6.0267 4.2154 0.0019 10 6 5.2617 5.4766 0.0025 11 6 5.8914 6.5027 0.9560 12 6 6.3587 5.8042 2.2171 13 8 7.7130 5.4083 2.0452 14 6 7.9948 4.1896 1.4618 15 1 7.5039 3.3954 2.0243 16 6 9.5073 3.9589 1.4676 17 7 9.9786 3.8450 2.8501 18 6 11.3075 3.6353 3.1052 19 1 12.0081 3.5534 2.2873 20 6 11.7542 3.5279 4.4151 21 7 10.9003 3.6272 5.4118 22 14 13.5669 3.2410 4.7633 23 1 14.3621 4.3636 4.2040 24 1 13.7830 3.1635 6.2304 25 1 13.9967 1.9674 4.1322 26 6 7.4775 4.1839 0.0078 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9877 0.9298 0.0005 33 1 3.4827 3.5624 -0.8888 34 1 3.4821 3.5618 0.8911 35 1 5.2480 5.8874 -1.0069 36 1 4.2388 5.2745 0.3204 37 1 6.7422 6.9776 0.4676 38 1 5.1516 7.2605 1.2138 39 1 6.2821 6.4873 3.0630 40 1 5.7409 4.9246 2.3979 41 1 9.7367 3.0397 0.9287 42 1 10.0047 4.7985 0.9821 43 1 9.3495 3.9189 3.5846 44 1 11.2125 3.5525 6.3272 45 1 7.8231 3.2795 -0.4929 46 1 7.8618 5.0586 -0.5170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200123651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:00 Heat of formation + Delta-G solvation = -99.393606 kcal Electronic energy + Delta-G solvation = -26774.676403 eV Core-core repulsion = 22893.053442 eV Total energy + Delta-G solvation = -3881.622962 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.92766 -39.84849 -38.56267 -35.81367 -34.87564 -34.57775 -33.13179 -32.89634 -30.95569 -29.79173 -27.97919 -26.63134 -25.16205 -24.09361 -22.60743 -21.79373 -21.00021 -20.67785 -19.40419 -18.03304 -17.20431 -16.96885 -16.70077 -16.53771 -16.36772 -15.81283 -15.72659 -15.06736 -14.68174 -14.39160 -14.23321 -13.95179 -13.69768 -13.47396 -13.11653 -13.01320 -12.78882 -12.68538 -12.59086 -12.32269 -12.08412 -12.05618 -11.71262 -11.49547 -11.41672 -11.02553 -10.82926 -10.76072 -10.33195 -10.22508 -10.15083 -9.97090 -9.67421 -9.49591 -9.46874 -8.82842 -8.69126 -6.85312 -5.69418 -2.97878 2.23884 2.34895 2.45342 3.02849 3.48474 3.52087 3.53605 3.90741 4.03560 4.41478 4.50653 4.61013 4.66552 4.74511 4.75093 4.87134 4.93032 4.97272 5.18669 5.19506 5.24606 5.29546 5.40004 5.44421 5.47838 5.54676 5.60033 5.63339 5.78467 5.86332 5.90601 5.94237 5.99359 6.06161 6.32157 6.35859 6.63777 6.76474 6.99095 7.16934 7.73915 7.80159 7.89712 7.96932 8.48768 9.60134 10.18100 10.53877 11.53459 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.002777 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.454962 B =10080.585528 C =10942.014428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.544 6.544 5 N -0.721 5.721 6 C 0.100 3.900 7 C 0.502 3.498 8 O -0.529 6.529 9 N -0.603 5.603 10 C 0.101 3.899 11 C -0.167 4.167 12 C 0.073 3.927 13 O -0.368 6.368 14 C 0.089 3.911 15 H 0.052 0.948 16 C 0.166 3.834 17 N -0.726 5.726 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.933 5.933 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.080 3.920 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.413 0.587 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.035 0.965 42 H 0.028 0.972 43 H 0.387 0.613 44 H 0.255 0.745 45 H 0.095 0.905 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.238 -0.203 -14.006 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.422 6.422 5 N -0.376 5.376 6 C -0.027 4.027 7 C 0.289 3.711 8 O -0.405 6.405 9 N -0.336 5.336 10 C -0.021 4.021 11 C -0.205 4.205 12 C -0.004 4.004 13 O -0.286 6.286 14 C 0.029 3.971 15 H 0.070 0.930 16 C 0.038 3.962 17 N -0.370 5.370 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.043 4.043 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.251 0.749 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.220 0.780 44 H 0.065 0.935 45 H 0.113 0.887 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.140 0.008 -13.980 24.517 hybrid contribution 0.884 -0.455 0.370 1.061 sum -19.257 -0.447 -13.611 23.585 Atomic orbital electron populations 1.21531 0.92845 1.01708 1.03357 1.21627 0.98680 0.93288 1.04775 1.20844 0.81451 0.92219 0.75361 1.90702 1.55309 1.46582 1.49564 1.45829 1.07807 1.08230 1.75771 1.21129 0.91311 0.85725 1.04542 1.20585 0.89776 0.84158 0.76630 1.90730 1.69716 1.30741 1.49341 1.47883 1.07149 1.05771 1.72799 1.22100 0.95234 0.84195 1.00604 1.22514 1.02266 0.98285 0.97445 1.22126 0.83697 0.98223 0.96356 1.86448 1.24871 1.36903 1.80369 1.22192 0.98036 0.86038 0.90859 0.93040 1.20603 0.87816 0.98028 0.89734 1.42214 1.06820 1.87209 1.00763 1.19182 0.84741 1.41197 0.91813 0.91218 1.24742 0.97719 1.03010 0.95579 1.69665 1.33056 1.57194 0.98248 0.86251 0.85012 0.77987 0.76828 1.21287 1.21733 1.21302 1.22397 0.78115 1.04267 0.99557 0.91951 0.91920 0.92006 0.88687 0.88567 0.74860 0.88449 0.88391 0.90926 0.89775 0.89760 0.89437 0.89117 0.93623 0.94775 0.95461 0.77958 0.93539 0.88673 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.14 -0.97 6.42 -27.88 -0.18 -1.14 16 3 C 0.51 5.16 7.83 -10.98 -0.09 5.07 16 4 O -0.54 -7.20 15.98 5.56 0.09 -7.12 16 5 N -0.72 -7.00 5.53 -61.47 -0.34 -7.34 16 6 C 0.10 0.96 4.49 -5.19 -0.02 0.94 16 7 C 0.50 6.05 7.70 -10.98 -0.08 5.96 16 8 O -0.53 -8.14 15.09 5.56 0.08 -8.05 16 9 N -0.60 -6.78 2.20 -172.78 -0.38 -7.16 16 10 C 0.10 0.81 6.00 -3.19 -0.02 0.79 16 11 C -0.17 -1.49 5.78 -27.17 -0.16 -1.65 16 12 C 0.07 0.92 6.38 36.42 0.23 1.15 16 13 O -0.37 -6.38 9.38 -26.56 -0.25 -6.63 16 14 C 0.09 1.55 2.67 -26.03 -0.07 1.48 16 15 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 16 C 0.17 3.50 5.92 -4.04 -0.02 3.47 16 17 N -0.73 -19.35 5.54 -59.91 -0.33 -19.68 16 18 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 19 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -29.09 13.06 55.49 0.72 -28.37 16 22 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.08 1.08 4.83 -4.08 -0.02 1.06 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.41 3.88 7.44 -40.82 -0.30 3.58 16 33 H 0.10 0.81 8.04 -51.93 -0.42 0.40 16 34 H 0.10 0.89 7.41 -51.93 -0.38 0.51 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.53 5.88 -51.93 -0.31 0.23 16 37 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.58 7.40 -51.93 -0.38 0.20 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.39 11.00 7.65 -40.82 -0.31 10.68 16 44 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.10 1.36 7.27 -51.93 -0.38 0.99 16 46 H 0.09 1.05 8.11 -51.93 -0.42 0.62 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -36.04 373.19 -7.65 -43.70 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.51 Total: 8.18 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -0.33 Total: 8.96 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.33 Total: -62.55 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.08 Total: -21.80 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.04 -7.65 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200123651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.697 kcal (2) G-P(sol) polarization free energy of solvation -36.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds