Wall clock time and date at job start Tue Mar 31 2020 04:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 O 1.21280 * 119.99781 * 0.02562 * 3 2 1 5 5 N 1.34780 * 119.99795 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99566 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.46835 * 180.02562 * 6 5 3 8 8 O 1.21273 * 119.99963 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.47507 * 118.75793 * 359.97438 * 9 7 6 11 11 C 1.53574 * 111.02924 * 138.35205 * 10 9 7 12 12 C 1.51542 * 109.58300 * 320.02632 * 11 10 9 13 13 O 1.42145 * 108.75665 * 91.39536 * 12 11 10 14 14 C 1.38021 * 119.44277 * 272.77098 * 13 12 11 15 15 H 1.09002 * 109.47165 * 303.43459 * 14 13 12 16 16 C 1.52999 * 109.47150 * 183.43344 * 14 13 12 17 17 N 1.46500 * 109.47116 * 65.00193 * 16 14 13 18 18 C 1.36936 * 119.99582 * 180.02562 * 17 16 14 19 19 H 1.08005 * 120.00275 * 359.97438 * 18 17 16 20 20 C 1.38809 * 119.99859 * 179.97438 * 18 17 16 21 21 N 1.31621 * 119.99950 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00448 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46987 * 59.99836 * 22 20 18 24 24 H 1.48497 * 109.47361 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46985 * 300.00156 * 22 20 18 26 26 C 1.45119 * 118.75774 * 179.73174 * 9 7 6 27 27 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 30 30 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 32 32 H 0.96995 * 120.00011 * 0.02562 * 5 3 2 33 33 H 1.09001 * 109.47487 * 300.00114 * 6 5 3 34 34 H 1.09002 * 109.47182 * 60.00342 * 6 5 3 35 35 H 1.08993 * 109.17218 * 258.75286 * 10 9 7 36 36 H 1.08998 * 109.16797 * 18.00727 * 10 9 7 37 37 H 1.08996 * 109.44969 * 80.05722 * 11 10 9 38 38 H 1.08998 * 109.45494 * 199.99384 * 11 10 9 39 39 H 1.08999 * 109.59196 * 211.18233 * 12 11 10 40 40 H 1.09002 * 109.58217 * 331.61765 * 12 11 10 41 41 H 1.09001 * 109.47013 * 185.00167 * 16 14 13 42 42 H 1.09001 * 109.46831 * 304.99524 * 16 14 13 43 43 H 0.96991 * 120.00120 * 359.97438 * 17 16 14 44 44 H 0.96999 * 120.00615 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.46096 * 29.32637 * 26 9 7 46 46 H 1.09001 * 109.45823 * 149.28198 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3575 1.6670 0.0005 6 6 3.8457 3.0482 0.0011 7 6 5.3528 3.0482 0.0010 8 8 5.9591 1.9979 0.0000 9 7 6.0267 4.2154 0.0019 10 6 5.2617 5.4766 0.0025 11 6 5.8914 6.5027 0.9560 12 6 6.3587 5.8042 2.2171 13 8 7.7130 5.4083 2.0452 14 6 7.9948 4.1896 1.4618 15 1 7.5039 3.3954 2.0243 16 6 9.5073 3.9589 1.4676 17 7 9.9786 3.8450 2.8501 18 6 11.3075 3.6353 3.1052 19 1 12.0081 3.5534 2.2873 20 6 11.7542 3.5279 4.4151 21 7 10.9003 3.6272 5.4118 22 14 13.5669 3.2410 4.7633 23 1 14.3621 4.3636 4.2040 24 1 13.7830 3.1635 6.2304 25 1 13.9967 1.9674 4.1322 26 6 7.4775 4.1839 0.0078 27 1 -0.3635 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.9877 0.9298 0.0005 33 1 3.4827 3.5624 -0.8888 34 1 3.4821 3.5618 0.8911 35 1 5.2480 5.8874 -1.0069 36 1 4.2388 5.2745 0.3204 37 1 6.7422 6.9776 0.4676 38 1 5.1516 7.2605 1.2138 39 1 6.2821 6.4873 3.0630 40 1 5.7409 4.9246 2.3979 41 1 9.7367 3.0397 0.9287 42 1 10.0047 4.7985 0.9821 43 1 9.3495 3.9189 3.5846 44 1 11.2125 3.5525 6.3272 45 1 7.8231 3.2795 -0.4929 46 1 7.8618 5.0586 -0.5170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200123651.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:59 Heat of formation + Delta-G solvation = -126.758149 kcal Electronic energy + Delta-G solvation = -26775.863019 eV Core-core repulsion = 22893.053442 eV Total energy + Delta-G solvation = -3882.809577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90063 -40.72430 -39.68533 -36.98918 -36.31518 -35.64097 -34.33953 -33.71280 -32.68890 -30.92993 -29.22627 -27.58666 -26.60332 -25.08299 -24.13914 -22.85452 -22.34778 -21.42668 -20.30194 -19.27357 -18.85010 -17.98298 -17.76400 -17.53495 -17.27023 -16.92215 -16.64840 -16.34811 -16.09498 -15.56508 -15.16170 -15.11193 -14.84649 -14.78450 -14.52335 -14.21412 -13.92589 -13.65668 -13.59504 -13.25899 -13.16892 -13.10282 -12.73243 -12.65237 -12.63372 -12.34347 -12.18060 -12.04539 -12.02897 -11.83660 -11.50220 -11.10420 -11.01433 -10.97042 -10.59050 -10.28577 -9.74726 -9.02215 -7.94661 -5.24637 1.31374 1.46403 1.50974 1.56812 1.58026 1.60918 2.26939 2.56103 2.70416 3.20085 3.38782 3.61031 3.76666 3.81934 3.95917 4.04857 4.08185 4.16971 4.19210 4.25410 4.28153 4.29427 4.36675 4.42486 4.52542 4.66583 4.70398 4.73992 4.82732 4.87803 5.00834 5.06804 5.07315 5.11054 5.16928 5.18331 5.37268 5.42513 5.46779 6.10114 6.25773 6.41528 6.72885 6.87883 7.13381 7.31913 8.06189 8.30914 9.29110 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.002777 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.454962 B =10080.585528 C =10942.014428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C 0.511 3.489 4 O -0.580 6.580 5 N -0.721 5.721 6 C 0.105 3.895 7 C 0.500 3.500 8 O -0.568 6.568 9 N -0.601 5.601 10 C 0.096 3.904 11 C -0.156 4.156 12 C 0.063 3.937 13 O -0.397 6.397 14 C 0.104 3.896 15 H 0.020 0.980 16 C 0.162 3.838 17 N -0.741 5.741 18 C -0.248 4.248 19 H 0.079 0.921 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.980 3.020 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.276 1.276 26 C 0.094 3.906 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.415 0.585 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.038 0.962 42 H 0.033 0.967 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.085 0.915 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.922 0.256 -15.600 26.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.180 4.180 3 C 0.300 3.700 4 O -0.460 6.460 5 N -0.376 5.376 6 C -0.022 4.022 7 C 0.289 3.711 8 O -0.448 6.448 9 N -0.333 5.333 10 C -0.024 4.024 11 C -0.194 4.194 12 C -0.012 4.012 13 O -0.316 6.316 14 C 0.044 3.956 15 H 0.038 0.962 16 C 0.035 3.965 17 N -0.383 5.383 18 C -0.380 4.380 19 H 0.097 0.903 20 C -0.271 4.271 21 N -0.622 5.622 22 Si 0.808 3.192 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.202 1.202 26 C -0.030 4.030 27 H 0.102 0.898 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.253 0.747 33 H 0.134 0.866 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.204 0.796 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.837 0.489 -15.629 26.052 hybrid contribution 1.045 -0.558 0.858 1.463 sum -19.792 -0.068 -14.771 24.697 Atomic orbital electron populations 1.21534 0.93016 1.02705 1.02109 1.21708 0.98443 0.91355 1.06511 1.21425 0.81044 0.93217 0.74311 1.90682 1.56026 1.47894 1.51377 1.45910 1.07911 1.08406 1.75375 1.21171 0.89180 0.86128 1.05728 1.21024 0.90759 0.83714 0.75649 1.90713 1.70672 1.32216 1.51171 1.47959 1.06274 1.06993 1.72070 1.22413 0.95521 0.82440 1.02042 1.22432 1.02909 0.98721 0.95365 1.22407 0.81544 0.98420 0.98875 1.86368 1.27926 1.36367 1.80972 1.21815 0.95308 0.85369 0.93118 0.96163 1.20762 0.90643 0.98128 0.86932 1.42431 1.06067 1.87259 1.02586 1.19650 0.85956 1.40079 0.92274 0.90327 1.25662 1.02432 1.03558 0.95437 1.69844 1.35159 1.58873 0.98370 0.85124 0.79489 0.78332 0.76273 1.20126 1.22078 1.20236 1.22072 0.79802 1.04682 0.96474 0.89797 0.93384 0.93049 0.86551 0.87039 0.74664 0.86557 0.87634 0.88159 0.87627 0.90314 0.86177 0.88781 0.94068 0.94465 0.94893 0.79597 0.94001 0.89661 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.20 71.98 0.66 -1.04 16 2 C -0.14 -1.65 6.42 29.85 0.19 -1.46 16 3 C 0.51 9.65 7.83 87.66 0.69 10.34 16 4 O -0.58 -14.85 15.98 -3.03 -0.05 -14.89 16 5 N -0.72 -13.15 5.53 -466.78 -2.58 -15.73 16 6 C 0.10 1.83 4.49 85.63 0.38 2.22 16 7 C 0.50 11.55 7.70 87.66 0.67 12.22 16 8 O -0.57 -17.54 15.09 -3.01 -0.05 -17.58 16 9 N -0.60 -12.54 2.20 -818.93 -1.80 -14.35 16 10 C 0.10 1.22 6.00 86.38 0.52 1.74 16 11 C -0.16 -2.35 5.78 30.31 0.18 -2.18 16 12 C 0.06 1.56 6.38 71.50 0.46 2.01 16 13 O -0.40 -13.89 9.38 -117.94 -1.11 -15.00 16 14 C 0.10 3.69 2.67 31.05 0.08 3.78 16 15 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 16 C 0.16 6.96 5.92 86.38 0.51 7.47 16 17 N -0.74 -40.62 5.54 -343.45 -1.90 -42.52 16 18 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 19 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.08 -4.72 5.50 84.86 0.47 -4.26 16 21 N -0.97 -62.05 13.06 21.65 0.28 -61.77 16 22 Si 0.98 47.47 29.55 68.60 2.03 49.50 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 C 0.09 2.47 4.83 87.09 0.42 2.89 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 29 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.42 7.47 7.44 -92.71 -0.69 6.78 16 33 H 0.12 1.62 8.04 -2.39 -0.02 1.60 16 34 H 0.11 1.72 7.41 -2.39 -0.02 1.70 16 35 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.11 0.94 5.88 -2.39 -0.01 0.92 16 37 H 0.08 1.33 8.01 -2.39 -0.02 1.32 16 38 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.04 1.03 7.40 -2.39 -0.02 1.01 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.03 1.38 8.14 -2.39 -0.02 1.37 16 43 H 0.37 22.10 7.65 -92.71 -0.71 21.39 16 44 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.09 2.43 7.27 -2.39 -0.02 2.41 16 46 H 0.11 2.37 8.11 -2.39 -0.02 2.35 16 Total: -1.00 -80.31 373.19 0.49 -79.82 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.41 Total: 32.48 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 6.07 Total: 20.05 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -6.00 Total: -134.37 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -1.20 Total: -47.48 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -80.31 0.49 -79.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200123651.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.938 kcal (2) G-P(sol) polarization free energy of solvation -80.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds