Wall clock time and date at job start Tue Mar 31 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 C 1.50698 * 109.46967 * 239.99931 * 2 1 3 5 5 N 1.34781 * 120.00131 * 60.00401 * 4 2 1 6 6 O 1.21279 * 120.00462 * 239.99843 * 4 2 1 7 7 C 1.50697 * 109.47302 * 119.99965 * 2 1 3 8 8 O 1.21284 * 119.99812 * 128.48552 * 7 2 1 9 9 N 1.34778 * 119.99881 * 308.48924 * 7 2 1 10 10 C 1.47498 * 118.75854 * 355.45609 * 9 7 2 11 11 C 1.53585 * 111.02655 * 221.62939 * 10 9 7 12 12 C 1.51527 * 109.58087 * 39.97681 * 11 10 9 13 13 O 1.42161 * 108.76284 * 268.60171 * 12 11 10 14 14 C 1.38012 * 119.43627 * 87.22265 * 13 12 11 15 15 H 1.08999 * 109.47223 * 56.57556 * 14 13 12 16 16 C 1.52996 * 109.47077 * 176.57191 * 14 13 12 17 17 N 1.46496 * 109.47477 * 300.00201 * 16 14 13 18 18 C 1.36934 * 120.00375 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99643 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99784 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00447 * 359.72863 * 20 18 17 22 22 Si 1.86803 * 119.99730 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47227 * 179.72828 * 22 20 18 24 24 H 1.48501 * 109.47099 * 299.73073 * 22 20 18 25 25 H 1.48507 * 109.47130 * 59.72723 * 22 20 18 26 26 C 1.45121 * 118.75532 * 175.45484 * 9 7 2 27 27 H 1.08994 * 109.46959 * 299.99829 * 1 2 3 28 28 H 1.09003 * 109.47125 * 59.99963 * 1 2 3 29 29 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46558 * 201.43368 * 3 2 1 31 31 H 1.08997 * 109.47425 * 321.42868 * 3 2 1 32 32 H 1.08997 * 109.47121 * 81.43549 * 3 2 1 33 33 H 0.97004 * 119.99615 * 359.97438 * 5 4 2 34 34 H 0.97001 * 120.00462 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.17243 * 101.22872 * 10 9 7 36 36 H 1.09005 * 109.12937 * 341.99557 * 10 9 7 37 37 H 1.09001 * 109.44566 * 279.93858 * 11 10 9 38 38 H 1.09003 * 109.44986 * 160.01017 * 11 10 9 39 39 H 1.09002 * 109.59276 * 148.81875 * 12 11 10 40 40 H 1.09005 * 109.59296 * 28.38033 * 12 11 10 41 41 H 1.09002 * 109.47363 * 180.02562 * 16 14 13 42 42 H 1.09007 * 109.46778 * 59.99745 * 16 14 13 43 43 H 0.97006 * 119.99553 * 359.97438 * 17 16 14 44 44 H 0.97008 * 119.99795 * 0.27468 * 21 20 18 45 45 H 1.09005 * 109.46378 * 330.68798 * 26 9 7 46 46 H 1.08995 * 109.46188 * 210.72833 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7068 -0.2499 -2.4546 6 8 2.7296 -1.6965 -1.1193 7 6 2.0324 -0.7104 1.2304 8 8 2.8508 -1.5993 1.1257 9 7 1.5722 -0.3579 2.4472 10 6 0.6551 0.7925 2.5531 11 6 1.0052 1.6664 3.7666 12 6 2.5110 1.7793 3.8936 13 8 2.9776 0.7382 4.7418 14 6 3.2799 -0.4944 4.1994 15 1 4.0242 -0.3725 3.4125 16 6 3.8376 -1.4092 5.2916 17 7 5.0512 -0.8129 5.8555 18 6 5.7293 -1.4567 6.8558 19 1 5.3696 -2.4043 7.2289 20 6 6.8795 -0.8919 7.3897 21 7 7.3213 0.2598 6.9307 22 14 7.8041 -1.7698 8.7549 23 1 8.9922 -0.9680 9.1431 24 1 6.9121 -1.9342 9.9307 25 1 8.2431 -3.1053 8.2761 26 6 1.9976 -1.1246 3.6035 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.0630 1.4662 -0.3756 31 1 1.4036 2.0529 -0.6407 32 1 2.0168 1.8361 1.0162 33 1 1.1488 0.5386 -2.5436 34 1 2.0304 -0.7070 -3.2466 35 1 -0.3665 0.4274 2.6578 36 1 0.7292 1.3930 1.6464 37 1 0.5976 1.2129 4.6701 38 1 0.5766 2.6598 3.6343 39 1 2.7699 2.7461 4.3253 40 1 2.9691 1.6817 2.9094 41 1 4.0768 -2.3825 4.8632 42 1 3.0933 -1.5310 6.0786 43 1 5.3743 0.0380 5.5201 44 1 6.8408 0.7159 6.2220 45 1 2.2039 -2.1517 3.3024 46 1 1.2073 -1.1183 4.3542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200738210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:15 Heat of formation + Delta-G solvation = -73.662046 kcal Electronic energy + Delta-G solvation = -28209.031705 eV Core-core repulsion = 24328.524548 eV Total energy + Delta-G solvation = -3880.507158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49610 -39.61665 -38.10692 -36.35817 -34.92316 -34.62887 -33.47138 -32.84994 -30.83511 -28.67525 -28.04427 -26.75547 -25.33853 -24.35362 -22.92997 -21.87284 -21.08221 -20.87074 -19.39621 -17.80067 -17.22272 -17.05045 -16.62047 -16.32833 -16.11900 -15.77793 -15.42316 -14.91355 -14.83905 -14.43816 -14.05584 -13.88375 -13.76945 -13.58704 -13.18527 -13.01919 -12.88878 -12.70076 -12.56850 -12.38030 -12.21758 -11.91715 -11.71238 -11.54253 -11.28364 -10.80243 -10.62829 -10.46438 -10.29953 -10.13810 -9.91843 -9.89662 -9.42781 -9.37964 -9.08686 -8.76999 -8.53624 -6.85656 -5.97815 -2.95377 2.36350 2.60710 2.64745 3.26488 3.59595 3.64345 3.81249 3.89177 3.94760 4.21954 4.42708 4.48033 4.55818 4.63156 4.76661 4.83552 4.92933 5.09638 5.10150 5.15648 5.20390 5.22868 5.34643 5.38067 5.42060 5.56580 5.58410 5.62017 5.73596 5.79693 5.94026 5.96738 6.06768 6.20707 6.49765 6.50687 6.66590 6.77405 6.98958 7.19890 7.91082 7.97066 8.00843 8.18806 8.89650 9.37705 10.24274 10.40558 11.51340 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021024 B = 0.003386 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.464748 B = 8267.565246 C = 8883.233475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C -0.154 4.154 4 C 0.525 3.475 5 N -0.857 5.857 6 O -0.493 6.493 7 C 0.514 3.486 8 O -0.484 6.484 9 N -0.609 5.609 10 C 0.085 3.915 11 C -0.169 4.169 12 C 0.072 3.928 13 O -0.369 6.369 14 C 0.087 3.913 15 H 0.051 0.949 16 C 0.172 3.828 17 N -0.737 5.737 18 C -0.328 4.328 19 H 0.064 0.936 20 C -0.047 4.047 21 N -0.945 5.945 22 Si 1.081 2.919 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.296 1.296 26 C 0.085 3.915 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.397 0.603 34 H 0.403 0.597 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.046 0.954 41 H 0.035 0.965 42 H 0.027 0.973 43 H 0.370 0.630 44 H 0.255 0.745 45 H 0.092 0.908 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.615 7.072 -18.480 29.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.111 4.111 3 C -0.211 4.211 4 C 0.307 3.693 5 N -0.423 5.423 6 O -0.363 6.363 7 C 0.298 3.702 8 O -0.355 6.355 9 N -0.344 5.344 10 C -0.037 4.037 11 C -0.208 4.208 12 C -0.005 4.005 13 O -0.287 6.287 14 C 0.027 3.973 15 H 0.069 0.931 16 C 0.044 3.956 17 N -0.382 5.382 18 C -0.460 4.460 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.591 5.591 22 Si 0.912 3.088 23 H -0.211 1.211 24 H -0.223 1.223 25 H -0.223 1.223 26 C -0.039 4.039 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.226 0.774 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.204 0.796 44 H 0.066 0.934 45 H 0.111 0.889 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.436 5.792 -16.961 26.438 hybrid contribution -1.695 0.398 -1.885 2.566 sum -21.131 6.190 -18.846 28.983 Atomic orbital electron populations 1.22406 0.90718 1.04110 1.04628 1.20858 0.98769 0.97794 0.93671 1.22147 1.02741 0.91840 1.04388 1.19864 0.80468 0.84584 0.84429 1.43797 1.56686 1.34045 1.07778 1.90924 1.34959 1.24633 1.85824 1.19951 0.82271 0.84064 0.83890 1.90884 1.30074 1.29354 1.85180 1.47813 1.48147 1.31827 1.06596 1.22648 0.93014 0.87686 1.00362 1.22561 0.98788 1.00394 0.99015 1.22146 0.92108 0.91395 0.94833 1.86432 1.84789 1.20026 1.37443 1.22289 0.94012 0.84250 0.96719 0.93123 1.20550 0.89445 0.93238 0.92398 1.42199 1.27093 1.24713 1.44217 1.20043 1.08149 1.04399 1.13366 0.91819 1.25762 0.96478 0.98442 1.03765 1.70849 1.41974 1.16167 1.30129 0.83229 0.76037 0.74488 0.75011 1.21096 1.22344 1.22317 1.22380 0.97860 0.96718 0.86912 0.88953 0.90994 0.91421 0.91014 0.90367 0.89810 0.77436 0.76609 0.91253 0.88117 0.89849 0.89622 0.89285 0.93557 0.94693 0.95544 0.79638 0.93375 0.88936 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 7.85 37.16 0.29 -0.64 16 2 C -0.10 -0.99 0.59 -156.81 -0.09 -1.08 16 3 C -0.15 -1.04 7.87 37.16 0.29 -0.75 16 4 C 0.52 6.08 6.62 -10.98 -0.07 6.01 16 5 N -0.86 -5.35 8.67 31.22 0.27 -5.08 16 6 O -0.49 -8.78 15.06 -18.88 -0.28 -9.07 16 7 C 0.51 7.36 6.37 -10.99 -0.07 7.29 16 8 O -0.48 -9.66 13.71 -18.88 -0.26 -9.92 16 9 N -0.61 -7.51 2.18 -172.47 -0.38 -7.88 16 10 C 0.08 0.67 3.72 -3.19 -0.01 0.66 16 11 C -0.17 -1.50 5.78 -27.17 -0.16 -1.66 16 12 C 0.07 0.92 6.37 36.41 0.23 1.15 16 13 O -0.37 -6.64 9.18 -26.53 -0.24 -6.89 16 14 C 0.09 1.63 2.73 -25.78 -0.07 1.56 16 15 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.17 3.87 5.95 -4.05 -0.02 3.85 16 17 N -0.74 -20.44 5.49 -59.91 -0.33 -20.77 16 18 C -0.33 -9.96 9.99 -15.06 -0.15 -10.11 16 19 H 0.06 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.05 -1.45 5.50 -17.43 -0.10 -1.55 16 21 N -0.95 -30.84 13.70 55.49 0.76 -30.08 16 22 Si 1.08 27.26 29.92 -169.99 -5.09 22.17 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.08 1.27 4.83 -3.83 -0.02 1.25 16 27 H 0.09 0.41 3.92 -51.93 -0.20 0.21 16 28 H 0.07 0.20 7.55 -51.93 -0.39 -0.19 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.60 7.95 -51.93 -0.41 0.19 16 31 H 0.08 0.24 7.95 -51.93 -0.41 -0.18 16 32 H 0.08 0.57 4.46 -51.93 -0.23 0.34 16 33 H 0.40 1.05 8.15 -40.82 -0.33 0.72 16 34 H 0.40 2.24 8.93 -40.82 -0.36 1.87 16 35 H 0.07 0.43 7.38 -51.93 -0.38 0.05 16 36 H 0.10 0.57 2.90 -51.93 -0.15 0.42 16 37 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.59 6.40 -51.93 -0.33 0.26 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.37 10.62 6.36 -40.82 -0.26 10.36 16 44 H 0.26 8.28 6.78 -40.82 -0.28 8.00 16 45 H 0.09 1.52 7.34 -51.93 -0.38 1.14 16 46 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -41.82 352.31 -6.90 -48.72 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.71 Total: 7.49 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 0.05 Total: 5.99 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.33 Total: -63.81 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.79 Total: -25.87 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -5.09 Total: 22.17 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -41.82 -6.90 -48.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200738210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.946 kcal (2) G-P(sol) polarization free energy of solvation -41.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds