Wall clock time and date at job start Tue Mar 31 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46867 * 2 1 4 4 C 1.50698 * 109.46967 * 239.99931 * 2 1 3 5 5 N 1.34781 * 120.00131 * 60.00401 * 4 2 1 6 6 O 1.21279 * 120.00462 * 239.99843 * 4 2 1 7 7 C 1.50697 * 109.47302 * 119.99965 * 2 1 3 8 8 O 1.21284 * 119.99812 * 128.48552 * 7 2 1 9 9 N 1.34778 * 119.99881 * 308.48924 * 7 2 1 10 10 C 1.47498 * 118.75854 * 355.45609 * 9 7 2 11 11 C 1.53585 * 111.02655 * 221.62939 * 10 9 7 12 12 C 1.51527 * 109.58087 * 39.97681 * 11 10 9 13 13 O 1.42161 * 108.76284 * 268.60171 * 12 11 10 14 14 C 1.38012 * 119.43627 * 87.22265 * 13 12 11 15 15 H 1.08999 * 109.47223 * 56.57556 * 14 13 12 16 16 C 1.52996 * 109.47077 * 176.57191 * 14 13 12 17 17 N 1.46496 * 109.47477 * 300.00201 * 16 14 13 18 18 C 1.36934 * 120.00375 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99643 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99784 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00447 * 359.72863 * 20 18 17 22 22 Si 1.86803 * 119.99730 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47227 * 179.72828 * 22 20 18 24 24 H 1.48501 * 109.47099 * 299.73073 * 22 20 18 25 25 H 1.48507 * 109.47130 * 59.72723 * 22 20 18 26 26 C 1.45121 * 118.75532 * 175.45484 * 9 7 2 27 27 H 1.08994 * 109.46959 * 299.99829 * 1 2 3 28 28 H 1.09003 * 109.47125 * 59.99963 * 1 2 3 29 29 H 1.09004 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46558 * 201.43368 * 3 2 1 31 31 H 1.08997 * 109.47425 * 321.42868 * 3 2 1 32 32 H 1.08997 * 109.47121 * 81.43549 * 3 2 1 33 33 H 0.97004 * 119.99615 * 359.97438 * 5 4 2 34 34 H 0.97001 * 120.00462 * 179.97438 * 5 4 2 35 35 H 1.08999 * 109.17243 * 101.22872 * 10 9 7 36 36 H 1.09005 * 109.12937 * 341.99557 * 10 9 7 37 37 H 1.09001 * 109.44566 * 279.93858 * 11 10 9 38 38 H 1.09003 * 109.44986 * 160.01017 * 11 10 9 39 39 H 1.09002 * 109.59276 * 148.81875 * 12 11 10 40 40 H 1.09005 * 109.59296 * 28.38033 * 12 11 10 41 41 H 1.09002 * 109.47363 * 180.02562 * 16 14 13 42 42 H 1.09007 * 109.46778 * 59.99745 * 16 14 13 43 43 H 0.97006 * 119.99553 * 359.97438 * 17 16 14 44 44 H 0.97008 * 119.99795 * 0.27468 * 21 20 18 45 45 H 1.09005 * 109.46378 * 330.68798 * 26 9 7 46 46 H 1.08995 * 109.46188 * 210.72833 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 7 1.7068 -0.2499 -2.4546 6 8 2.7296 -1.6965 -1.1193 7 6 2.0324 -0.7104 1.2304 8 8 2.8508 -1.5993 1.1257 9 7 1.5722 -0.3579 2.4472 10 6 0.6551 0.7925 2.5531 11 6 1.0052 1.6664 3.7666 12 6 2.5110 1.7793 3.8936 13 8 2.9776 0.7382 4.7418 14 6 3.2799 -0.4944 4.1994 15 1 4.0242 -0.3725 3.4125 16 6 3.8376 -1.4092 5.2916 17 7 5.0512 -0.8129 5.8555 18 6 5.7293 -1.4567 6.8558 19 1 5.3696 -2.4043 7.2289 20 6 6.8795 -0.8919 7.3897 21 7 7.3213 0.2598 6.9307 22 14 7.8041 -1.7698 8.7549 23 1 8.9922 -0.9680 9.1431 24 1 6.9121 -1.9342 9.9307 25 1 8.2431 -3.1053 8.2761 26 6 1.9976 -1.1246 3.6035 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.0630 1.4662 -0.3756 31 1 1.4036 2.0529 -0.6407 32 1 2.0168 1.8361 1.0162 33 1 1.1488 0.5386 -2.5436 34 1 2.0304 -0.7070 -3.2466 35 1 -0.3665 0.4274 2.6578 36 1 0.7292 1.3930 1.6464 37 1 0.5976 1.2129 4.6701 38 1 0.5766 2.6598 3.6343 39 1 2.7699 2.7461 4.3253 40 1 2.9691 1.6817 2.9094 41 1 4.0768 -2.3825 4.8632 42 1 3.0933 -1.5310 6.0786 43 1 5.3743 0.0380 5.5201 44 1 6.8408 0.7159 6.2220 45 1 2.2039 -2.1517 3.3024 46 1 1.2073 -1.1183 4.3542 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200738210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:15 Heat of formation + Delta-G solvation = -108.461200 kcal Electronic energy + Delta-G solvation = -28210.540710 eV Core-core repulsion = 24328.524548 eV Total energy + Delta-G solvation = -3882.016162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45312 -40.70995 -39.29017 -37.47629 -36.73732 -35.68582 -34.55855 -33.96665 -32.60650 -30.18482 -28.56641 -27.79004 -26.79458 -25.39915 -24.77067 -23.17382 -22.36180 -21.81422 -20.29841 -19.43480 -18.63494 -18.01796 -17.85098 -17.44486 -17.35005 -16.82026 -16.43369 -16.16108 -15.86000 -15.69703 -15.44951 -15.20534 -14.96599 -14.86474 -14.78739 -14.19571 -13.92388 -13.66744 -13.43828 -13.26132 -13.22024 -12.89170 -12.82288 -12.65058 -12.59482 -12.35169 -12.29924 -11.89870 -11.83343 -11.43621 -11.32086 -11.10372 -10.99444 -10.66891 -10.60997 -10.40014 -9.69279 -9.16487 -8.44801 -5.37418 1.45904 1.55987 1.63570 1.67959 1.72018 1.84361 2.52373 2.62291 2.69849 3.13788 3.37119 3.50235 3.63724 3.76954 3.80747 3.86945 3.92894 3.98719 4.03949 4.19745 4.21926 4.36810 4.38683 4.50943 4.58772 4.62171 4.66088 4.71090 4.75501 4.76852 4.79149 4.96845 5.08221 5.09141 5.16365 5.19903 5.48256 5.52106 5.88069 6.19782 6.44054 6.45133 6.65087 7.04281 7.09494 7.38014 7.94356 8.07583 9.06994 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021024 B = 0.003386 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.464748 B = 8267.565246 C = 8883.233475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.096 4.096 3 C -0.153 4.153 4 C 0.517 3.483 5 N -0.828 5.828 6 O -0.569 6.569 7 C 0.500 3.500 8 O -0.555 6.555 9 N -0.604 5.604 10 C 0.076 3.924 11 C -0.159 4.159 12 C 0.059 3.941 13 O -0.397 6.397 14 C 0.108 3.892 15 H 0.013 0.987 16 C 0.168 3.832 17 N -0.751 5.751 18 C -0.341 4.341 19 H 0.068 0.932 20 C -0.106 4.106 21 N -0.971 5.971 22 Si 1.134 2.866 23 H -0.289 1.289 24 H -0.273 1.273 25 H -0.278 1.278 26 C 0.097 3.903 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.420 0.580 34 H 0.408 0.592 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.098 0.902 40 H 0.042 0.958 41 H 0.026 0.974 42 H 0.034 0.966 43 H 0.361 0.639 44 H 0.241 0.759 45 H 0.069 0.931 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.078 9.168 -19.212 32.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.103 4.103 3 C -0.210 4.210 4 C 0.300 3.700 5 N -0.394 5.394 6 O -0.446 6.446 7 C 0.288 3.712 8 O -0.431 6.431 9 N -0.337 5.337 10 C -0.043 4.043 11 C -0.196 4.196 12 C -0.016 4.016 13 O -0.317 6.317 14 C 0.047 3.953 15 H 0.031 0.969 16 C 0.041 3.959 17 N -0.395 5.395 18 C -0.472 4.472 19 H 0.086 0.914 20 C -0.296 4.296 21 N -0.619 5.619 22 Si 0.957 3.043 23 H -0.215 1.215 24 H -0.199 1.199 25 H -0.205 1.205 26 C -0.027 4.027 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.252 0.748 34 H 0.240 0.760 35 H 0.121 0.879 36 H 0.149 0.851 37 H 0.092 0.908 38 H 0.148 0.852 39 H 0.116 0.884 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.192 0.808 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.024 7.966 -17.750 30.144 hybrid contribution -0.669 -0.174 -1.730 1.863 sum -23.693 7.791 -19.481 31.647 Atomic orbital electron populations 1.22512 0.87060 1.04110 1.07776 1.20905 1.01348 0.98139 0.89908 1.22261 1.02639 0.90371 1.05734 1.20370 0.79533 0.83795 0.86286 1.43546 1.55433 1.34088 1.06315 1.90903 1.38578 1.28120 1.86992 1.21009 0.81167 0.83381 0.85679 1.90855 1.33293 1.32654 1.86336 1.47922 1.48097 1.32531 1.05149 1.23128 0.93387 0.86347 1.01482 1.22504 0.95203 1.02941 0.98991 1.22519 0.95205 0.89962 0.93952 1.86348 1.85518 1.20444 1.39352 1.21802 0.94843 0.84728 0.93884 0.96922 1.20676 0.87960 0.93737 0.93554 1.42405 1.28587 1.24439 1.44096 1.20457 1.08496 1.04613 1.13631 0.91406 1.27424 0.97733 0.98491 1.06000 1.70976 1.42609 1.17561 1.30778 0.82579 0.74922 0.73913 0.72855 1.21491 1.19891 1.20464 1.22036 0.96648 0.95670 0.88396 0.86835 0.86792 0.93066 0.93217 0.85066 0.89491 0.74758 0.75993 0.87915 0.85071 0.90760 0.85216 0.88434 0.93955 0.95589 0.94789 0.80750 0.94905 0.91206 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 7.85 71.98 0.57 -0.55 16 2 C -0.10 -1.64 0.59 -53.67 -0.03 -1.67 16 3 C -0.15 -1.56 7.87 71.98 0.57 -0.99 16 4 C 0.52 11.80 6.62 87.66 0.58 12.38 16 5 N -0.83 -8.46 8.67 -173.53 -1.50 -9.96 16 6 O -0.57 -21.66 15.06 20.34 0.31 -21.35 16 7 C 0.50 14.61 6.37 87.66 0.56 15.17 16 8 O -0.56 -24.08 13.71 20.32 0.28 -23.80 16 9 N -0.60 -14.42 2.18 -817.95 -1.79 -16.20 16 10 C 0.08 0.90 3.72 86.39 0.32 1.22 16 11 C -0.16 -2.21 5.78 30.31 0.18 -2.03 16 12 C 0.06 1.45 6.37 71.50 0.46 1.90 16 13 O -0.40 -14.64 9.18 -117.83 -1.08 -15.73 16 14 C 0.11 4.26 2.73 31.21 0.09 4.34 16 15 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 16 C 0.17 7.97 5.95 86.38 0.51 8.49 16 17 N -0.75 -43.63 5.49 -343.46 -1.88 -45.51 16 18 C -0.34 -21.20 9.99 84.03 0.84 -20.36 16 19 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.11 -6.62 5.50 84.86 0.47 -6.16 16 21 N -0.97 -65.16 13.70 21.65 0.30 -64.86 16 22 Si 1.13 55.21 29.92 68.60 2.05 57.26 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 24 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 C 0.10 3.00 4.83 87.26 0.42 3.42 16 27 H 0.11 0.32 3.92 -2.39 -0.01 0.31 16 28 H 0.11 -0.11 7.55 -2.39 -0.02 -0.13 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.76 7.95 -2.39 -0.02 0.74 16 31 H 0.13 -0.05 7.95 -2.39 -0.02 -0.07 16 32 H 0.09 0.86 4.46 -2.39 -0.01 0.85 16 33 H 0.42 0.37 8.15 -92.70 -0.76 -0.39 16 34 H 0.41 3.89 8.93 -92.71 -0.83 3.06 16 35 H 0.10 0.67 7.38 -2.39 -0.02 0.66 16 36 H 0.13 0.76 2.90 -2.38 -0.01 0.76 16 37 H 0.07 1.25 8.01 -2.39 -0.02 1.23 16 38 H 0.13 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.04 1.06 6.40 -2.38 -0.02 1.04 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.36 21.92 6.36 -92.70 -0.59 21.33 16 44 H 0.24 16.34 6.78 -92.70 -0.63 15.71 16 45 H 0.07 2.47 7.34 -2.38 -0.02 2.46 16 46 H 0.11 2.78 8.11 -2.39 -0.02 2.76 16 Total: -1.00 -101.92 352.31 1.20 -100.72 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: -0.99 Total: 24.29 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 5.52 Total: 15.15 kcal Atomic # 7 Polarization: -131.66 SS G_CDS: -4.88 Total: -136.54 kcal Atomic # 8 Polarization: -60.38 SS G_CDS: -0.50 Total: -60.88 kcal Atomic # 14 Polarization: 55.21 SS G_CDS: 2.05 Total: 57.26 kcal Total: -101.92 1.20 -100.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200738210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.743 kcal (2) G-P(sol) polarization free energy of solvation -101.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds