Wall clock time and date at job start Tue Mar 31 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00123 * 2 1 4 4 C 1.50699 * 109.47021 * 179.97438 * 3 2 1 5 5 O 1.21282 * 120.00159 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99931 * 179.72011 * 4 3 2 7 7 C 1.46498 * 120.00209 * 180.27356 * 6 4 3 8 8 H 1.09008 * 109.46631 * 35.00888 * 7 6 4 9 9 C 1.52992 * 109.47370 * 275.00585 * 7 6 4 10 10 C 1.50700 * 109.46889 * 155.00237 * 7 6 4 11 11 O 1.21273 * 120.00095 * 18.23915 * 10 7 6 12 12 N 1.34779 * 119.99653 * 198.23520 * 10 7 6 13 13 C 1.46923 * 120.63469 * 4.76962 * 12 10 7 14 14 C 1.53621 * 108.54389 * 126.36673 * 13 12 10 15 15 C 1.53048 * 109.23947 * 54.85941 * 14 13 12 16 16 C 1.53037 * 109.53696 * 298.51035 * 15 14 13 17 17 H 1.08998 * 109.52917 * 301.39550 * 16 15 14 18 18 N 1.46504 * 109.49715 * 181.31148 * 16 15 14 19 19 C 1.36939 * 119.99402 * 85.16137 * 18 16 15 20 20 H 1.07996 * 120.00479 * 0.02562 * 19 18 16 21 21 C 1.38815 * 119.99814 * 179.97438 * 19 18 16 22 22 N 1.31623 * 119.99915 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99977 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47528 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47199 * 120.00178 * 23 21 19 26 26 H 1.48503 * 109.47337 * 240.00215 * 23 21 19 27 27 C 1.46929 * 120.62665 * 185.05708 * 12 10 7 28 28 H 1.09001 * 109.46771 * 300.00271 * 1 2 3 29 29 H 1.09000 * 109.47073 * 60.00132 * 1 2 3 30 30 H 1.08998 * 109.46833 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46952 * 60.00027 * 3 2 1 32 32 H 1.09002 * 109.47212 * 300.00136 * 3 2 1 33 33 H 0.97007 * 120.00070 * 0.28231 * 6 4 3 34 34 H 1.08997 * 109.47179 * 59.51918 * 9 7 6 35 35 H 1.09001 * 109.47191 * 179.51578 * 9 7 6 36 36 H 1.08997 * 109.47527 * 299.51907 * 9 7 6 37 37 H 1.09003 * 109.59207 * 246.20370 * 13 12 10 38 38 H 1.09002 * 109.58335 * 6.63342 * 13 12 10 39 39 H 1.09002 * 109.63712 * 294.87143 * 14 13 12 40 40 H 1.08995 * 109.46369 * 174.74104 * 14 13 12 41 41 H 1.09004 * 109.45985 * 178.48789 * 15 14 13 42 42 H 1.09005 * 109.44593 * 58.52287 * 15 14 13 43 43 H 0.96996 * 120.00388 * 265.16977 * 18 16 15 44 44 H 0.96995 * 119.99768 * 179.97438 * 22 21 19 45 45 H 1.08998 * 109.58697 * 353.36463 * 27 12 10 46 46 H 1.08999 * 109.58928 * 113.65447 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 -0.0050 7 6 5.7369 2.1810 -0.0104 8 1 6.0303 1.3118 -0.5991 9 6 6.2411 2.0186 1.4249 10 6 6.3370 3.4237 -0.6161 11 8 5.6763 4.4371 -0.7000 12 7 7.6079 3.4086 -1.0644 13 6 8.3867 2.1628 -1.0656 14 6 8.9366 1.9317 -2.4813 15 6 9.7258 3.1662 -2.9234 16 6 8.7965 4.3815 -2.9605 17 1 7.9718 4.1888 -3.6466 18 7 9.5455 5.5562 -3.4139 19 6 9.6942 5.7980 -4.7535 20 1 9.2591 5.1232 -5.4757 21 6 10.4034 6.9113 -5.1832 22 7 10.9333 7.7341 -4.3031 23 14 10.6057 7.2416 -7.0106 24 1 9.9205 6.1760 -7.7852 25 1 10.0068 8.5588 -7.3448 26 1 12.0503 7.2531 -7.3546 27 6 8.2431 4.6392 -1.5554 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8594 3.1725 -0.0053 34 1 5.8004 1.1245 1.8658 35 1 7.3269 1.9239 1.4201 36 1 5.9551 2.8917 2.0115 37 1 9.2125 2.2472 -0.3591 38 1 7.7437 1.3297 -0.7815 39 1 8.1106 1.7614 -3.1718 40 1 9.5935 1.0619 -2.4782 41 1 10.1403 2.9955 -3.9170 42 1 10.5365 3.3503 -2.2185 43 1 9.9361 6.1624 -2.7653 44 1 11.4292 8.5117 -4.6033 45 1 7.5054 5.4406 -1.5945 46 1 9.0557 4.9229 -0.8866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208150856.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:56 Heat of formation + Delta-G solvation = -99.662147 kcal Electronic energy + Delta-G solvation = -26631.447781 eV Core-core repulsion = 22749.813175 eV Total energy + Delta-G solvation = -3881.634607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.74972 -39.64778 -37.88566 -37.37400 -35.18041 -34.55534 -32.42951 -31.50611 -31.12083 -28.90924 -28.28812 -26.29318 -25.70204 -24.28308 -23.34515 -22.10773 -20.91452 -20.13074 -19.22010 -18.02515 -17.27176 -17.14138 -16.73395 -16.63489 -15.94277 -15.63646 -15.26889 -14.82845 -14.67646 -14.43750 -14.17083 -13.87947 -13.65769 -13.44525 -13.34998 -13.10761 -12.96833 -12.69660 -12.52267 -12.44867 -12.22462 -11.86974 -11.85382 -11.13469 -10.98739 -10.94138 -10.70976 -10.45977 -10.40200 -10.20873 -10.10509 -10.09043 -9.85765 -9.69269 -9.39544 -8.95146 -8.52767 -7.02542 -5.81110 -3.10802 2.24470 2.36253 2.55781 3.03762 3.41094 3.47167 3.49035 3.71190 4.22783 4.41137 4.55559 4.68845 4.72536 4.77090 4.84472 4.92586 4.94953 4.97668 5.10107 5.23992 5.27327 5.33358 5.46170 5.47996 5.52029 5.61300 5.71509 5.76282 5.85670 5.99458 6.04621 6.09043 6.17974 6.35257 6.49388 6.54797 6.61142 6.82804 6.99957 7.20401 7.39966 7.67031 7.91573 8.06973 8.36823 9.48234 10.02841 10.37910 11.41386 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020848 B = 0.002608 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.760139 B =10731.740510 C =11192.302195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.518 3.482 5 O -0.520 6.520 6 N -0.713 5.713 7 C 0.126 3.874 8 H 0.113 0.887 9 C -0.158 4.158 10 C 0.511 3.489 11 O -0.540 6.540 12 N -0.597 5.597 13 C 0.101 3.899 14 C -0.134 4.134 15 C -0.138 4.138 16 C 0.168 3.832 17 H 0.050 0.950 18 N -0.721 5.721 19 C -0.238 4.238 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.106 3.894 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.093 0.907 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.212 -14.369 12.724 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.303 3.697 5 O -0.395 6.395 6 N -0.369 5.369 7 C 0.018 3.982 8 H 0.131 0.869 9 C -0.216 4.216 10 C 0.298 3.702 11 O -0.417 6.417 12 N -0.330 5.330 13 C -0.022 4.022 14 C -0.172 4.172 15 C -0.178 4.178 16 C 0.058 3.942 17 H 0.068 0.932 18 N -0.362 5.362 19 C -0.369 4.369 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.017 4.017 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.248 0.752 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.079 -14.769 12.471 24.516 hybrid contribution 0.029 1.116 -0.858 1.408 sum -15.050 -13.653 11.613 23.405 Atomic orbital electron populations 1.22852 0.80216 1.03379 1.00244 1.88009 1.19900 1.25101 1.95464 1.22204 0.91249 0.87102 1.03038 1.20234 0.88773 0.84314 0.76391 1.90733 1.74536 1.26379 1.47834 1.45674 1.05580 1.09805 1.75841 1.20817 0.80919 0.97762 0.98722 0.86935 1.22100 1.02093 1.03383 0.94046 1.20424 0.81922 0.89592 0.78293 1.90689 1.60005 1.34035 1.56976 1.48056 1.12223 1.10901 1.61779 1.22027 0.95854 0.85612 0.98662 1.22014 1.00445 0.99383 0.95407 1.22296 0.99021 0.94701 1.01815 1.20474 0.93358 0.88278 0.92134 0.93169 1.42313 1.62960 1.25798 1.05132 1.19246 1.27988 1.06469 0.83241 0.91099 1.24756 1.00805 0.97647 0.97657 1.69670 1.40419 1.15723 1.32139 0.86113 0.77357 0.77749 0.84937 1.20547 1.21818 1.21838 1.22064 0.97732 0.85741 0.96128 0.93744 0.93675 0.89026 0.89978 0.89851 0.75151 0.90724 0.90657 0.91555 0.90823 0.89978 0.91762 0.91088 0.91452 0.92375 0.78190 0.93493 0.88818 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.81 10.24 -55.14 -0.56 -4.37 16 3 C 0.04 0.36 6.42 36.01 0.23 0.59 16 4 C 0.52 5.85 7.87 -10.99 -0.09 5.77 16 5 O -0.52 -7.87 16.16 -14.35 -0.23 -8.10 16 6 N -0.71 -7.44 5.04 -54.93 -0.28 -7.72 16 7 C 0.13 1.40 2.13 -69.09 -0.15 1.25 16 8 H 0.11 1.28 5.87 -51.92 -0.30 0.97 16 9 C -0.16 -1.45 9.32 37.15 0.35 -1.11 16 10 C 0.51 7.12 6.95 -10.98 -0.08 7.04 16 11 O -0.54 -9.14 15.32 5.56 0.09 -9.05 16 12 N -0.60 -8.25 2.97 -172.50 -0.51 -8.76 16 13 C 0.10 1.11 5.63 -3.49 -0.02 1.09 16 14 C -0.13 -1.66 6.10 -26.38 -0.16 -1.83 16 15 C -0.14 -2.28 5.46 -26.69 -0.15 -2.43 16 16 C 0.17 3.27 2.92 -67.81 -0.20 3.07 16 17 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 18 N -0.72 -17.64 5.12 -53.30 -0.27 -17.91 16 19 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 23 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.11 1.79 5.91 -3.70 -0.02 1.77 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.41 3.88 7.73 -40.82 -0.32 3.56 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.60 7.30 -51.93 -0.38 0.23 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.74 5.31 -51.93 -0.28 0.46 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.09 1.79 7.00 -51.93 -0.36 1.43 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -34.57 374.98 -7.25 -41.82 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -7.42 Total: 8.86 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 0.59 Total: 9.40 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.34 Total: -61.45 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.71 Total: -21.52 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.57 -7.25 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208150856.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.844 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds