Wall clock time and date at job start Tue Mar 31 2020 04:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47237 * 2 1 4 4 H 1.08998 * 109.47035 * 304.99561 * 3 2 1 5 5 N 1.46497 * 109.46800 * 64.99848 * 3 2 1 6 6 C 1.34772 * 120.00197 * 274.99770 * 5 3 2 7 7 C 1.50701 * 120.00111 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00180 * 0.02562 * 6 5 3 9 9 C 1.50707 * 109.47094 * 185.00122 * 3 2 1 10 10 O 1.21281 * 119.99648 * 240.00265 * 9 3 2 11 11 N 1.34774 * 120.00115 * 59.99687 * 9 3 2 12 12 C 1.46494 * 119.99974 * 179.97438 * 11 9 3 13 13 H 1.09004 * 110.64225 * 31.86451 * 12 11 9 14 14 C 1.54337 * 111.00356 * 268.78180 * 12 11 9 15 15 N 1.47017 * 107.26750 * 219.59987 * 14 12 11 16 16 C 1.36942 * 125.64906 * 178.84791 * 15 14 12 17 17 H 1.07997 * 119.99819 * 344.54969 * 16 15 14 18 18 C 1.38809 * 119.99826 * 164.54428 * 16 15 14 19 19 N 1.31615 * 120.00005 * 350.14453 * 18 16 15 20 20 Si 1.86801 * 119.99883 * 170.14735 * 18 16 15 21 21 H 1.48494 * 109.47211 * 265.15968 * 20 18 16 22 22 H 1.48500 * 109.47267 * 145.15324 * 20 18 16 23 23 H 1.48506 * 109.46951 * 25.15723 * 20 18 16 24 24 C 1.47428 * 108.70526 * 358.58865 * 15 14 12 25 25 C 1.54917 * 104.82938 * 24.35338 * 24 15 14 26 26 H 1.09002 * 111.00221 * 81.06321 * 25 24 15 27 27 O 1.42901 * 111.00389 * 204.88036 * 25 24 15 28 28 C 1.42904 * 113.99821 * 268.54910 * 27 25 24 29 29 H 1.09002 * 109.46752 * 60.00096 * 1 2 3 30 30 H 1.08998 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47218 * 299.99945 * 1 2 3 32 32 H 1.09004 * 109.47398 * 240.00065 * 2 1 3 33 33 H 1.09001 * 109.47138 * 120.00271 * 2 1 3 34 34 H 0.97008 * 119.99329 * 95.00648 * 5 3 2 35 35 H 1.09001 * 109.47032 * 59.99407 * 7 6 5 36 36 H 1.08993 * 109.47408 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.46694 * 300.00062 * 7 6 5 38 38 H 0.97002 * 119.99895 * 0.02562 * 11 9 3 39 39 H 1.09007 * 109.98549 * 100.12832 * 14 12 11 40 40 H 1.08996 * 109.77867 * 338.96352 * 14 12 11 41 41 H 0.97006 * 120.00041 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.36772 * 143.18699 * 24 15 14 43 43 H 1.08994 * 110.36536 * 265.40657 * 24 15 14 44 44 H 1.08994 * 109.47330 * 59.99545 * 28 27 25 45 45 H 1.08998 * 109.46958 * 179.97438 * 28 27 25 46 46 H 1.09003 * 109.46731 * 300.00044 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4352 2.6644 1.3669 7 6 0.0367 3.3386 2.6545 8 8 -0.3396 2.6320 0.4344 9 6 3.5420 1.4443 -0.1239 10 8 4.2217 1.9435 0.7478 11 7 4.1298 0.8910 -1.2031 12 6 5.5898 0.8933 -1.3238 13 1 6.0567 0.8313 -0.3407 14 6 6.0806 2.1473 -2.0778 15 7 7.1787 1.7246 -2.9592 16 6 7.8723 2.5371 -3.8160 17 1 7.4805 3.5100 -4.0736 18 6 9.0791 2.1103 -4.3530 19 7 9.6530 1.0177 -3.8960 20 14 9.8884 3.0869 -5.7244 21 1 9.5025 2.5101 -7.0372 22 1 11.3642 3.0257 -5.5713 23 1 9.4419 4.5015 -5.6548 24 6 7.4136 0.2824 -2.7636 25 6 6.0673 -0.2702 -2.2325 26 1 5.3658 -0.4412 -3.0491 27 8 6.2673 -1.4646 -1.4740 28 6 6.1802 -2.6644 -2.2454 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2720 2.1231 1.9978 35 1 0.7282 4.1540 2.8668 36 1 -0.9744 3.7344 2.5595 37 1 0.0680 2.6144 3.4685 38 1 3.5861 0.4921 -1.9004 39 1 6.4409 2.8918 -1.3677 40 1 5.2668 2.5624 -2.6722 41 1 10.4965 0.7196 -4.2710 42 1 7.6712 -0.1919 -3.7105 43 1 8.2059 0.1229 -2.0323 44 1 6.9390 -2.6493 -3.0277 45 1 6.3439 -3.5256 -1.5975 46 1 5.1917 -2.7334 -2.6994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213472231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:10 Heat of formation + Delta-G solvation = -92.764468 kcal Electronic energy + Delta-G solvation = -27190.024070 eV Core-core repulsion = 23308.688569 eV Total energy + Delta-G solvation = -3881.335501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.62276 -39.37656 -38.18045 -36.02844 -35.44204 -34.24923 -32.78221 -31.77080 -29.95629 -28.98045 -27.78875 -26.47020 -26.16686 -24.17460 -22.34855 -21.04797 -20.72300 -20.44840 -19.95693 -17.99234 -17.14621 -16.82236 -16.53528 -15.94743 -15.89317 -15.46851 -14.87637 -14.73175 -14.43219 -14.26567 -14.24833 -13.93320 -13.59521 -13.26750 -13.07050 -12.80125 -12.64302 -12.32028 -12.31519 -12.14429 -12.02870 -11.70826 -11.51742 -11.31057 -11.10209 -11.01442 -10.91412 -10.86737 -10.19878 -10.08732 -10.04986 -9.89232 -9.88586 -9.28299 -9.19950 -8.77935 -8.66970 -6.87382 -5.82976 -3.19706 2.41051 2.58524 2.76476 3.33902 3.36976 3.41942 3.43964 4.02895 4.42236 4.49534 4.61154 4.71336 4.84074 5.00727 5.08651 5.12621 5.18398 5.33529 5.34981 5.43518 5.52927 5.57939 5.58483 5.61104 5.61844 5.74883 5.75632 5.87784 5.88334 5.99011 6.09342 6.15125 6.21906 6.36430 6.64326 6.79794 7.14687 7.31460 7.35424 7.51180 7.67148 7.72037 8.01959 8.13819 8.20385 9.08670 9.70369 10.36835 11.29795 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.003224 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.763064 B = 8684.016444 C = 9655.451139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.126 3.874 4 H 0.114 0.886 5 N -0.711 5.711 6 C 0.513 3.487 7 C -0.174 4.174 8 O -0.544 6.544 9 C 0.512 3.488 10 O -0.535 6.535 11 N -0.708 5.708 12 C 0.138 3.862 13 H 0.105 0.895 14 C 0.129 3.871 15 N -0.597 5.597 16 C -0.235 4.235 17 H 0.078 0.922 18 C -0.002 4.002 19 N -0.914 5.914 20 Si 0.913 3.087 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.162 3.838 25 C 0.054 3.946 26 H 0.067 0.933 27 O -0.380 6.380 28 C 0.035 3.965 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.411 0.589 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.399 0.601 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.255 0.745 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.340 -4.428 9.394 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.018 3.982 4 H 0.132 0.868 5 N -0.366 5.366 6 C 0.300 3.700 7 C -0.233 4.233 8 O -0.421 6.421 9 C 0.296 3.704 10 O -0.412 6.412 11 N -0.358 5.358 12 C 0.034 3.966 13 H 0.123 0.877 14 C 0.002 3.998 15 N -0.325 5.325 16 C -0.363 4.363 17 H 0.095 0.905 18 C -0.200 4.200 19 N -0.559 5.559 20 Si 0.743 3.257 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.036 3.964 25 C -0.006 4.006 26 H 0.084 0.916 27 O -0.298 6.298 28 C -0.062 4.062 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.248 0.752 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.234 0.766 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.098 0.902 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -17.154 -4.087 9.456 20.009 hybrid contribution 0.629 0.216 -1.012 1.211 sum -16.525 -3.871 8.444 18.957 Atomic orbital electron populations 1.21798 0.94047 1.00929 1.03224 1.21912 0.97638 0.93989 1.03231 1.20877 0.91774 0.95632 0.89958 0.86813 1.45798 1.17098 1.57558 1.16112 1.20759 0.81073 0.77808 0.90332 1.21909 1.04299 1.01910 0.95203 1.90731 1.51254 1.59063 1.41087 1.20486 0.89685 0.78011 0.82175 1.90707 1.65082 1.45112 1.40308 1.45921 1.08029 1.59376 1.22504 1.22128 0.78207 0.95287 1.01018 0.87659 1.21638 0.91876 0.93725 0.92532 1.44260 1.38415 1.04541 1.45236 1.19016 1.00195 0.99113 1.18015 0.90456 1.24929 0.96204 0.98328 1.00537 1.69951 1.18305 1.24693 1.42997 0.86095 0.78588 0.79354 0.81688 1.21523 1.21638 1.20420 1.21713 0.90452 0.84285 0.99964 1.23964 1.00130 0.84004 0.92476 0.91557 1.87862 1.93021 1.13596 1.35280 1.22703 0.99658 0.87296 0.96559 0.91887 0.93136 0.92415 0.90488 0.91083 0.75229 0.89192 0.88916 0.89389 0.76630 0.94746 0.95244 0.93522 0.91704 0.93609 0.93583 0.90203 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.51 37.16 0.32 -1.06 16 2 C -0.13 -1.21 5.55 -26.73 -0.15 -1.36 16 3 C 0.13 1.40 2.67 -69.08 -0.18 1.22 16 4 H 0.11 1.31 7.58 -51.93 -0.39 0.92 16 5 N -0.71 -7.31 4.90 -54.93 -0.27 -7.58 16 6 C 0.51 5.29 6.51 -10.99 -0.07 5.22 16 7 C -0.17 -1.11 10.32 36.01 0.37 -0.74 16 8 O -0.54 -7.37 14.22 5.56 0.08 -7.29 16 9 C 0.51 7.14 7.22 -10.98 -0.08 7.06 16 10 O -0.54 -9.23 15.48 5.56 0.09 -9.15 16 11 N -0.71 -9.82 4.98 -52.02 -0.26 -10.08 16 12 C 0.14 2.48 3.04 -66.09 -0.20 2.28 16 13 H 0.11 2.10 7.55 -51.93 -0.39 1.71 16 14 C 0.13 2.74 7.01 -3.06 -0.02 2.72 16 15 N -0.60 -15.02 3.39 -170.06 -0.58 -15.60 16 16 C -0.24 -6.48 10.21 -15.06 -0.15 -6.63 16 17 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 18 C 0.00 -0.06 5.38 -17.43 -0.09 -0.16 16 19 N -0.91 -26.38 10.92 55.49 0.61 -25.78 16 20 Si 0.91 21.71 29.56 -169.99 -5.03 16.69 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 C 0.16 3.81 5.10 -2.52 -0.01 3.80 16 25 C 0.05 0.97 3.12 -24.58 -0.08 0.90 16 26 H 0.07 1.09 7.77 -51.93 -0.40 0.69 16 27 O -0.38 -6.57 10.52 -35.23 -0.37 -6.94 16 28 C 0.03 0.47 10.89 101.05 1.10 1.57 16 29 H 0.06 0.66 7.85 -51.93 -0.41 0.26 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.61 5.64 -51.93 -0.29 0.32 16 32 H 0.08 0.64 7.43 -51.93 -0.39 0.25 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.41 3.95 7.79 -40.82 -0.32 3.63 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.40 4.45 7.92 -40.82 -0.32 4.13 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.60 8.03 -51.93 -0.42 0.19 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.06 1.65 7.31 -51.93 -0.38 1.27 16 43 H 0.05 1.22 7.95 -51.93 -0.41 0.80 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.03 0.39 8.11 -51.93 -0.42 -0.03 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -33.44 373.02 -6.84 -40.28 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.47 Total: 5.02 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 0.75 Total: 14.81 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.50 Total: -59.04 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.21 Total: -23.38 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.44 -6.84 -40.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213472231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.487 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds