Wall clock time and date at job start Tue Mar 31 2020 04:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47237 * 2 1 4 4 H 1.08998 * 109.47035 * 304.99561 * 3 2 1 5 5 N 1.46497 * 109.46800 * 64.99848 * 3 2 1 6 6 C 1.34772 * 120.00197 * 274.99770 * 5 3 2 7 7 C 1.50701 * 120.00111 * 180.02562 * 6 5 3 8 8 O 1.21282 * 120.00180 * 0.02562 * 6 5 3 9 9 C 1.50707 * 109.47094 * 185.00122 * 3 2 1 10 10 O 1.21281 * 119.99648 * 240.00265 * 9 3 2 11 11 N 1.34774 * 120.00115 * 59.99687 * 9 3 2 12 12 C 1.46494 * 119.99974 * 179.97438 * 11 9 3 13 13 H 1.09004 * 110.64225 * 31.86451 * 12 11 9 14 14 C 1.54337 * 111.00356 * 268.78180 * 12 11 9 15 15 N 1.47017 * 107.26750 * 219.59987 * 14 12 11 16 16 C 1.36942 * 125.64906 * 178.84791 * 15 14 12 17 17 H 1.07997 * 119.99819 * 344.54969 * 16 15 14 18 18 C 1.38809 * 119.99826 * 164.54428 * 16 15 14 19 19 N 1.31615 * 120.00005 * 350.14453 * 18 16 15 20 20 Si 1.86801 * 119.99883 * 170.14735 * 18 16 15 21 21 H 1.48494 * 109.47211 * 265.15968 * 20 18 16 22 22 H 1.48500 * 109.47267 * 145.15324 * 20 18 16 23 23 H 1.48506 * 109.46951 * 25.15723 * 20 18 16 24 24 C 1.47428 * 108.70526 * 358.58865 * 15 14 12 25 25 C 1.54917 * 104.82938 * 24.35338 * 24 15 14 26 26 H 1.09002 * 111.00221 * 81.06321 * 25 24 15 27 27 O 1.42901 * 111.00389 * 204.88036 * 25 24 15 28 28 C 1.42904 * 113.99821 * 268.54910 * 27 25 24 29 29 H 1.09002 * 109.46752 * 60.00096 * 1 2 3 30 30 H 1.08998 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47218 * 299.99945 * 1 2 3 32 32 H 1.09004 * 109.47398 * 240.00065 * 2 1 3 33 33 H 1.09001 * 109.47138 * 120.00271 * 2 1 3 34 34 H 0.97008 * 119.99329 * 95.00648 * 5 3 2 35 35 H 1.09001 * 109.47032 * 59.99407 * 7 6 5 36 36 H 1.08993 * 109.47408 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.46694 * 300.00062 * 7 6 5 38 38 H 0.97002 * 119.99895 * 0.02562 * 11 9 3 39 39 H 1.09007 * 109.98549 * 100.12832 * 14 12 11 40 40 H 1.08996 * 109.77867 * 338.96352 * 14 12 11 41 41 H 0.97006 * 120.00041 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.36772 * 143.18699 * 24 15 14 43 43 H 1.08994 * 110.36536 * 265.40657 * 24 15 14 44 44 H 1.08994 * 109.47330 * 59.99545 * 28 27 25 45 45 H 1.08998 * 109.46958 * 179.97438 * 28 27 25 46 46 H 1.09003 * 109.46731 * 300.00044 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0974 1.2518 6 6 0.4352 2.6644 1.3669 7 6 0.0367 3.3386 2.6545 8 8 -0.3396 2.6320 0.4344 9 6 3.5420 1.4443 -0.1239 10 8 4.2217 1.9435 0.7478 11 7 4.1298 0.8910 -1.2031 12 6 5.5898 0.8933 -1.3238 13 1 6.0567 0.8313 -0.3407 14 6 6.0806 2.1473 -2.0778 15 7 7.1787 1.7246 -2.9592 16 6 7.8723 2.5371 -3.8160 17 1 7.4805 3.5100 -4.0736 18 6 9.0791 2.1103 -4.3530 19 7 9.6530 1.0177 -3.8960 20 14 9.8884 3.0869 -5.7244 21 1 9.5025 2.5101 -7.0372 22 1 11.3642 3.0257 -5.5713 23 1 9.4419 4.5015 -5.6548 24 6 7.4136 0.2824 -2.7636 25 6 6.0673 -0.2702 -2.2325 26 1 5.3658 -0.4412 -3.0491 27 8 6.2673 -1.4646 -1.4740 28 6 6.1802 -2.6644 -2.2454 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.2720 2.1231 1.9978 35 1 0.7282 4.1540 2.8668 36 1 -0.9744 3.7344 2.5595 37 1 0.0680 2.6144 3.4685 38 1 3.5861 0.4921 -1.9004 39 1 6.4409 2.8918 -1.3677 40 1 5.2668 2.5624 -2.6722 41 1 10.4965 0.7196 -4.2710 42 1 7.6712 -0.1919 -3.7105 43 1 8.2059 0.1229 -2.0323 44 1 6.9390 -2.6493 -3.0277 45 1 6.3439 -3.5256 -1.5975 46 1 5.1917 -2.7334 -2.6994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213472231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:09 Heat of formation + Delta-G solvation = -118.840598 kcal Electronic energy + Delta-G solvation = -27191.154816 eV Core-core repulsion = 23308.688569 eV Total energy + Delta-G solvation = -3882.466247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67436 -40.52725 -39.54581 -37.53890 -36.39446 -35.73768 -33.92392 -33.33641 -30.76396 -30.50050 -29.22794 -27.76196 -27.46316 -25.89334 -23.27143 -22.46888 -22.15681 -21.50385 -21.28786 -19.28686 -18.63731 -18.10653 -17.69100 -17.21070 -16.99748 -16.72160 -16.33546 -15.95004 -15.79085 -15.62312 -15.33562 -15.04583 -14.89965 -14.61122 -14.34824 -13.98059 -13.87951 -13.55632 -13.31808 -13.10779 -13.07774 -12.99351 -12.86695 -12.75600 -12.66217 -12.45647 -12.36752 -12.06764 -11.91656 -11.86626 -11.64987 -11.08104 -10.91295 -10.79261 -10.59030 -10.22276 -10.06763 -8.92771 -7.93654 -5.33868 1.42048 1.46404 1.47229 1.57012 1.60855 1.78612 2.39013 2.44572 2.70911 3.26028 3.41806 3.55920 3.78431 3.85014 3.95750 3.97805 4.02718 4.04632 4.33949 4.38540 4.43239 4.51672 4.59247 4.59675 4.64537 4.68304 4.83163 4.84789 4.89019 4.89718 5.01966 5.08298 5.14867 5.21995 5.33998 5.36424 5.44091 5.45680 5.57749 6.10602 6.27602 6.38551 6.53291 6.99499 7.06400 7.23564 7.65230 8.31488 9.17647 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.003224 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.763064 B = 8684.016444 C = 9655.451139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C 0.135 3.865 4 H 0.112 0.888 5 N -0.711 5.711 6 C 0.509 3.491 7 C -0.167 4.167 8 O -0.579 6.579 9 C 0.515 3.485 10 O -0.569 6.569 11 N -0.695 5.695 12 C 0.157 3.843 13 H 0.084 0.916 14 C 0.129 3.871 15 N -0.615 5.615 16 C -0.253 4.253 17 H 0.080 0.920 18 C -0.056 4.056 19 N -0.944 5.944 20 Si 0.981 3.019 21 H -0.282 1.282 22 H -0.294 1.294 23 H -0.268 1.268 24 C 0.169 3.831 25 C 0.078 3.922 26 H 0.095 0.905 27 O -0.393 6.393 28 C 0.026 3.974 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.415 0.585 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.417 0.583 39 H 0.014 0.986 40 H 0.044 0.956 41 H 0.251 0.749 42 H 0.039 0.961 43 H 0.004 0.996 44 H 0.032 0.968 45 H 0.103 0.897 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.305 -4.928 9.429 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.026 3.974 4 H 0.130 0.870 5 N -0.365 5.365 6 C 0.298 3.702 7 C -0.226 4.226 8 O -0.459 6.459 9 C 0.301 3.699 10 O -0.447 6.447 11 N -0.347 5.347 12 C 0.051 3.949 13 H 0.102 0.898 14 C 0.003 3.997 15 N -0.343 5.343 16 C -0.381 4.381 17 H 0.098 0.902 18 C -0.250 4.250 19 N -0.591 5.591 20 Si 0.808 3.192 21 H -0.208 1.208 22 H -0.221 1.221 23 H -0.193 1.193 24 C 0.043 3.957 25 C 0.018 3.982 26 H 0.112 0.888 27 O -0.312 6.312 28 C -0.070 4.070 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.092 0.908 34 H 0.252 0.748 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.129 0.871 38 H 0.254 0.746 39 H 0.032 0.968 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.022 0.978 44 H 0.051 0.949 45 H 0.122 0.878 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.164 -4.599 9.500 21.878 hybrid contribution 1.244 0.364 -0.969 1.618 sum -17.920 -4.235 8.531 20.294 Atomic orbital electron populations 1.21719 0.94014 1.01505 1.02126 1.21906 0.97440 0.92626 1.04208 1.20825 0.89075 0.97054 0.90491 0.86996 1.45875 1.17326 1.57462 1.15857 1.21447 0.80424 0.77143 0.91156 1.21934 1.04582 1.02488 0.93638 1.90716 1.52151 1.60456 1.42621 1.20991 0.90791 0.76798 0.81298 1.90701 1.66138 1.46416 1.41494 1.45669 1.06218 1.59532 1.23278 1.21576 0.80504 0.93610 0.99230 0.89793 1.21718 0.91076 0.94962 0.91979 1.44517 1.38917 1.05262 1.45618 1.19384 1.00692 0.99589 1.18465 0.90211 1.25768 0.96887 0.99486 1.02879 1.70146 1.18462 1.26234 1.44231 0.85044 0.76986 0.78424 0.78739 1.20847 1.22084 1.19297 1.21477 0.92625 0.83959 0.97674 1.23555 0.97123 0.84492 0.93015 0.88777 1.87855 1.93072 1.14256 1.35968 1.22984 1.00964 0.86292 0.96711 0.93005 0.91648 0.93516 0.88830 0.90783 0.74761 0.87901 0.88697 0.87132 0.74558 0.96798 0.93799 0.93982 0.94296 0.97802 0.94886 0.87831 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.51 71.98 0.61 -1.73 16 2 C -0.12 -2.00 5.55 30.59 0.17 -1.83 16 3 C 0.13 2.75 2.67 44.25 0.12 2.87 16 4 H 0.11 2.41 7.58 -2.39 -0.02 2.39 16 5 N -0.71 -13.59 4.90 -446.09 -2.19 -15.77 16 6 C 0.51 9.78 6.51 87.66 0.57 10.35 16 7 C -0.17 -1.79 10.32 71.24 0.74 -1.05 16 8 O -0.58 -15.16 14.22 -3.04 -0.04 -15.20 16 9 C 0.51 13.64 7.22 87.66 0.63 14.28 16 10 O -0.57 -19.30 15.48 -3.03 -0.05 -19.35 16 11 N -0.70 -18.02 4.98 -436.89 -2.18 -20.20 16 12 C 0.16 5.56 3.04 46.19 0.14 5.70 16 13 H 0.08 3.40 7.55 -2.39 -0.02 3.38 16 14 C 0.13 5.52 7.01 86.73 0.61 6.12 16 15 N -0.62 -31.68 3.39 -691.96 -2.35 -34.03 16 16 C -0.25 -14.14 10.21 84.03 0.86 -13.28 16 17 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 18 C -0.06 -3.14 5.38 84.86 0.46 -2.68 16 19 N -0.94 -56.21 10.92 21.65 0.24 -55.97 16 20 Si 0.98 45.09 29.56 68.60 2.03 47.12 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 C 0.17 8.20 5.10 86.86 0.44 8.64 16 25 C 0.08 2.76 3.12 31.99 0.10 2.86 16 26 H 0.09 2.85 7.77 -2.39 -0.02 2.83 16 27 O -0.39 -13.13 10.52 -148.98 -1.57 -14.69 16 28 C 0.03 0.65 10.89 113.37 1.23 1.89 16 29 H 0.05 1.01 7.85 -2.39 -0.02 0.99 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.91 5.64 -2.39 -0.01 0.89 16 32 H 0.09 1.22 7.43 -2.38 -0.02 1.20 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.41 7.39 7.79 -92.70 -0.72 6.67 16 35 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.00 8.12 -2.39 -0.02 0.99 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.42 8.03 7.92 -92.71 -0.73 7.30 16 39 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.04 1.75 8.03 -2.39 -0.02 1.73 16 41 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 42 H 0.04 2.05 7.31 -2.39 -0.02 2.04 16 43 H 0.00 0.22 7.95 -2.39 -0.02 0.20 16 44 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 Total: -1.00 -75.00 373.02 0.11 -74.89 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.46 Total: 21.08 kcal Atomic # 6 Polarization: 25.46 SS G_CDS: 6.68 Total: 32.14 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -6.47 Total: -125.98 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -1.66 Total: -49.24 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -75.00 0.11 -74.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213472231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.952 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds