Wall clock time and date at job start Tue Mar 31 2020 04:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00484 * 2 1 4 4 H 1.09001 * 109.46798 * 329.99982 * 3 2 1 5 5 C 1.53006 * 109.47036 * 89.99585 * 3 2 1 6 6 C 1.50697 * 109.47590 * 209.99962 * 3 2 1 7 7 O 1.21282 * 119.99755 * 355.00038 * 6 3 2 8 8 N 1.34766 * 120.00340 * 175.00030 * 6 3 2 9 9 C 1.48118 * 127.03200 * 359.68357 * 8 6 3 10 10 C 1.54601 * 103.42545 * 219.28343 * 9 8 6 11 11 H 1.09001 * 110.57154 * 81.16880 * 10 9 8 12 12 C 1.52993 * 110.99485 * 204.37401 * 10 9 8 13 13 C 1.54621 * 102.91239 * 322.87199 * 10 9 8 14 14 H 1.08995 * 110.32227 * 262.80646 * 13 10 9 15 15 N 1.46894 * 110.32901 * 140.58646 * 13 10 9 16 16 C 1.46897 * 110.99768 * 157.92619 * 15 13 10 17 17 C 1.50704 * 109.47028 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00074 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00090 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99894 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99815 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99741 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00209 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99828 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46959 * 90.00328 * 24 22 20 26 26 H 1.48494 * 109.47263 * 210.00215 * 24 22 20 27 27 H 1.48500 * 109.47524 * 330.00770 * 24 22 20 28 28 C 1.47487 * 127.03846 * 179.97438 * 8 6 3 29 29 H 1.09001 * 109.46884 * 59.99871 * 1 2 3 30 30 H 1.09003 * 109.47640 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47629 * 300.00382 * 1 2 3 32 32 H 1.09000 * 109.47050 * 180.02562 * 5 3 2 33 33 H 1.09001 * 109.46801 * 300.00369 * 5 3 2 34 34 H 1.09001 * 109.46998 * 59.99965 * 5 3 2 35 35 H 1.08998 * 110.66286 * 337.76814 * 9 8 6 36 36 H 1.09003 * 110.66277 * 100.89084 * 9 8 6 37 37 H 1.08993 * 109.47646 * 173.65407 * 12 10 9 38 38 H 1.08999 * 109.46704 * 293.65533 * 12 10 9 39 39 H 1.09001 * 109.47309 * 53.65090 * 12 10 9 40 40 H 1.00896 * 110.99997 * 281.87630 * 15 13 10 41 41 H 1.08995 * 109.47310 * 299.99493 * 16 15 13 42 42 H 1.09003 * 109.47529 * 60.00217 * 16 15 13 43 43 H 0.97000 * 119.99926 * 0.02562 * 19 17 16 44 44 H 0.97000 * 120.00142 * 180.02562 * 23 22 20 45 45 H 1.08996 * 109.91504 * 273.88030 * 28 8 6 46 46 H 1.08997 * 109.90985 * 35.15567 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4426 6 6 3.3387 1.2638 -0.7104 7 8 3.7897 0.2044 -1.0914 8 7 4.0255 2.4038 -0.9223 9 6 3.6215 3.7743 -0.5321 10 6 4.0668 4.6363 -1.7358 11 1 3.3327 4.5801 -2.5395 12 6 4.2960 6.0891 -1.3147 13 6 5.3971 3.9734 -2.1621 14 1 6.2425 4.5111 -1.7331 15 7 5.5033 3.9381 -3.6267 16 6 6.9047 3.8162 -4.0501 17 6 6.9736 3.7826 -5.5552 18 8 5.9555 3.8528 -6.2107 19 7 8.1666 3.6746 -6.1729 20 6 8.2294 3.6446 -7.5421 21 1 7.3229 3.7079 -8.1257 22 6 9.4594 3.5338 -8.1789 23 7 10.5625 3.4573 -7.4688 24 14 9.5449 3.4922 -10.0445 25 1 9.6799 4.8765 -10.5648 26 1 10.7186 2.6874 -10.4684 27 1 8.3040 2.8797 -10.5834 28 6 5.3304 2.5427 -1.5955 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.6607 2.7672 1.4426 33 1 1.2568 1.8014 1.9563 34 1 2.8828 1.0773 1.9564 35 1 2.5415 3.8331 -0.3966 36 1 4.1414 4.0853 0.3741 37 1 4.7155 6.6481 -2.1511 38 1 3.3467 6.5357 -1.0188 39 1 4.9891 6.1187 -0.4739 40 1 4.9431 3.1927 -4.0121 41 1 7.4719 4.6698 -3.6790 42 1 7.3274 2.8960 -3.6468 43 1 8.9808 3.6182 -5.6487 44 1 11.4211 3.3803 -7.9134 45 1 6.1365 2.3893 -0.8780 46 1 5.4088 1.8184 -2.4062 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214231182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:23 Heat of formation + Delta-G solvation = -136.002835 kcal Electronic energy + Delta-G solvation = -26433.727253 eV Core-core repulsion = 22550.516796 eV Total energy + Delta-G solvation = -3883.210457 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.50717 -40.24358 -39.45711 -38.32642 -36.23162 -35.59315 -33.65988 -33.25155 -32.60589 -29.94382 -27.87016 -27.74885 -27.30478 -26.04889 -24.77014 -23.07092 -21.53140 -20.90595 -20.59090 -19.91467 -18.57212 -17.93458 -17.68155 -17.02248 -16.92315 -16.75008 -16.31888 -16.09656 -15.97825 -15.57239 -15.27255 -15.23109 -14.72480 -14.47246 -14.13340 -13.85339 -13.62551 -13.58901 -13.51147 -13.38003 -13.28338 -13.05479 -12.96897 -12.82343 -12.70895 -12.44195 -12.18398 -12.14268 -12.04573 -11.83029 -11.64016 -11.52598 -11.09504 -10.59635 -10.37838 -10.03977 -9.96766 -9.30175 -8.48511 -5.97348 1.36564 1.40267 1.44911 1.53137 1.60788 2.03032 2.27627 2.82523 2.91962 3.18572 3.31669 3.48462 3.54163 3.74555 3.84637 3.97315 4.08701 4.11673 4.29728 4.35406 4.42841 4.45809 4.51158 4.52266 4.55498 4.63537 4.66338 4.71228 4.77306 4.83000 4.83659 4.89636 5.11253 5.16880 5.18883 5.36716 5.39397 5.53644 5.88477 6.04142 6.08519 6.24122 6.42652 6.57978 7.02136 7.10603 7.53925 8.09330 8.68900 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.002521 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.355315 B =11104.355943 C =11789.244364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.401 6.401 3 C 0.076 3.924 4 H 0.113 0.887 5 C -0.165 4.165 6 C 0.519 3.481 7 O -0.585 6.585 8 N -0.614 5.614 9 C 0.100 3.900 10 C -0.091 4.091 11 H 0.073 0.927 12 C -0.131 4.131 13 C 0.082 3.918 14 H 0.117 0.883 15 N -0.665 5.665 16 C 0.063 3.937 17 C 0.436 3.564 18 O -0.625 6.625 19 N -0.573 5.573 20 C -0.335 4.335 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.269 1.269 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.075 3.925 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.339 0.661 41 H 0.114 0.886 42 H 0.061 0.939 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.081 0.919 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.980 3.862 23.137 28.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.016 3.984 4 H 0.130 0.870 5 C -0.222 4.222 6 C 0.308 3.692 7 O -0.464 6.464 8 N -0.349 5.349 9 C -0.022 4.022 10 C -0.111 4.111 11 H 0.092 0.908 12 C -0.189 4.189 13 C -0.028 4.028 14 H 0.135 0.865 15 N -0.296 5.296 16 C -0.069 4.069 17 C 0.224 3.776 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.194 1.194 26 H -0.195 1.195 27 H -0.199 1.199 28 C -0.050 4.050 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.158 0.842 41 H 0.132 0.868 42 H 0.079 0.921 43 H 0.231 0.769 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.167 3.751 22.391 27.871 hybrid contribution 0.872 -1.288 -0.982 1.840 sum -15.295 2.462 21.409 26.426 Atomic orbital electron populations 1.23100 0.78435 1.04214 1.01589 1.88005 1.22135 1.26618 1.95214 1.22012 0.91317 0.86856 0.98264 0.86961 1.22281 1.04582 1.02735 0.92602 1.20927 0.87036 0.82145 0.79042 1.90712 1.71006 1.31501 1.53175 1.48750 1.21039 1.07583 1.57501 1.23059 1.02859 0.78060 0.98173 1.22223 0.95555 0.96222 0.97092 0.90808 1.21649 1.02979 0.92704 1.01576 1.22844 1.00887 0.92830 0.86281 0.86508 1.60283 1.07947 1.52977 1.08363 1.21621 0.91721 1.02863 0.90739 1.20908 0.83346 0.82182 0.91193 1.90493 1.35674 1.56671 1.68321 1.41933 1.07610 1.64562 1.06889 1.19653 0.94228 1.49630 0.82904 0.90449 1.26048 0.94035 0.96219 1.04980 1.69667 0.98507 1.49907 1.37964 0.84930 0.77901 0.78696 0.76824 1.19388 1.19500 1.19948 1.22961 0.86033 0.98699 0.97332 0.93088 0.88757 0.91237 0.88425 0.88782 0.92894 0.87302 0.87391 0.93299 0.90621 0.90733 0.84211 0.86771 0.92095 0.76918 0.91249 0.90068 0.93812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.52 16 2 O -0.40 -9.25 9.88 -129.99 -1.28 -10.54 16 3 C 0.08 1.36 2.42 29.85 0.07 1.43 16 4 H 0.11 1.34 7.31 -2.39 -0.02 1.32 16 5 C -0.16 -1.76 9.34 71.98 0.67 -1.09 16 6 C 0.52 13.89 7.27 87.66 0.64 14.53 16 7 O -0.58 -22.74 16.84 15.95 0.27 -22.47 16 8 N -0.61 -12.85 3.29 -810.05 -2.67 -15.52 16 9 C 0.10 1.11 4.82 86.61 0.42 1.52 16 10 C -0.09 -1.42 3.35 -9.70 -0.03 -1.45 16 11 H 0.07 1.47 8.06 -2.39 -0.02 1.45 16 12 C -0.13 -1.51 9.17 71.98 0.66 -0.85 16 13 C 0.08 1.72 2.88 45.81 0.13 1.85 16 14 H 0.12 2.00 7.57 -2.39 -0.02 1.98 16 15 N -0.66 -20.51 5.85 -490.96 -2.87 -23.38 16 16 C 0.06 2.13 6.00 85.56 0.51 2.65 16 17 C 0.44 21.11 7.82 87.66 0.69 21.80 16 18 O -0.62 -35.43 15.78 -3.07 -0.05 -35.48 16 19 N -0.57 -29.92 5.29 -306.97 -1.62 -31.54 16 20 C -0.33 -19.38 9.68 84.04 0.81 -18.57 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 24 Si 0.99 43.68 29.55 68.60 2.03 45.70 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 28 C 0.07 1.76 6.55 86.54 0.57 2.32 16 29 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 0.52 7.87 -2.39 -0.02 0.50 16 32 H 0.10 0.58 5.94 -2.39 -0.01 0.56 16 33 H 0.09 0.58 7.87 -2.39 -0.02 0.56 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.11 0.66 6.67 -2.39 -0.02 0.64 16 36 H 0.11 0.66 7.92 -2.39 -0.02 0.64 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 40 H 0.34 12.05 7.93 -89.70 -0.71 11.34 16 41 H 0.11 3.31 8.08 -2.39 -0.02 3.29 16 42 H 0.06 1.90 8.11 -2.39 -0.02 1.88 16 43 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 44 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.04 1.35 7.54 -2.39 -0.02 1.33 16 Total: -1.00 -82.33 377.61 0.47 -81.87 By element: Atomic # 1 Polarization: 36.35 SS G_CDS: -0.45 Total: 35.90 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 6.83 Total: 25.43 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -6.88 Total: -120.41 kcal Atomic # 8 Polarization: -67.42 SS G_CDS: -1.06 Total: -68.49 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -82.33 0.47 -81.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214231182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.137 kcal (2) G-P(sol) polarization free energy of solvation -82.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds