Wall clock time and date at job start Tue Mar 31 2020 04:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21279 * 120.00508 * 2 1 4 4 N 1.34776 * 119.99916 * 179.97438 * 2 1 3 5 5 C 1.46506 * 120.00172 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46946 * 35.00163 * 5 4 2 7 7 C 1.50701 * 109.46925 * 155.00065 * 5 4 2 8 8 O 1.21280 * 120.00106 * 20.98268 * 7 5 4 9 9 N 1.34780 * 119.99685 * 200.97983 * 7 5 4 10 10 C 1.46502 * 119.99682 * 174.98563 * 9 7 5 11 11 H 1.08998 * 110.88947 * 34.30322 * 10 9 7 12 12 C 1.54909 * 111.00639 * 270.42068 * 10 9 7 13 13 N 1.47475 * 104.80929 * 204.95269 * 12 10 9 14 14 C 1.36932 * 125.62309 * 204.14569 * 13 12 10 15 15 H 1.08003 * 120.00821 * 359.93249 * 14 13 12 16 16 C 1.38818 * 119.99614 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00007 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99899 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47240 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46921 * 120.00127 * 18 16 14 21 21 H 1.48504 * 109.46949 * 239.99880 * 18 16 14 22 22 C 1.47020 * 108.72162 * 24.06962 * 13 12 10 23 23 C 1.54322 * 107.27272 * 358.97465 * 22 13 12 24 24 H 1.09000 * 110.71803 * 219.43920 * 23 22 13 25 25 O 1.42900 * 110.71859 * 96.17114 * 23 22 13 26 26 C 1.52997 * 109.47504 * 275.00341 * 5 4 2 27 27 C 1.53001 * 109.47124 * 305.61721 * 26 5 4 28 28 C 1.53003 * 109.46814 * 65.61189 * 26 5 4 29 29 H 1.09002 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47241 * 299.99917 * 1 2 3 31 31 H 1.09001 * 109.47564 * 60.00446 * 1 2 3 32 32 H 0.97002 * 120.00521 * 0.02562 * 4 2 1 33 33 H 0.97000 * 120.00303 * 355.26640 * 9 7 5 34 34 H 1.09005 * 110.36524 * 323.75341 * 12 10 9 35 35 H 1.08996 * 110.36815 * 86.07940 * 12 10 9 36 36 H 0.97001 * 120.00122 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.87999 * 239.55250 * 22 13 12 38 38 H 1.08997 * 109.87930 * 118.39681 * 22 13 12 39 39 H 0.96700 * 114.00097 * 66.47646 * 25 23 22 40 40 H 1.08994 * 109.47377 * 185.61432 * 26 5 4 41 41 H 1.09003 * 109.47412 * 59.99424 * 27 26 5 42 42 H 1.08995 * 109.47347 * 180.02562 * 27 26 5 43 43 H 1.09001 * 109.46716 * 300.00077 * 27 26 5 44 44 H 1.08998 * 109.47183 * 53.73084 * 28 26 5 45 45 H 1.09003 * 109.46407 * 173.72208 * 28 26 5 46 46 H 1.08998 * 109.47343 * 293.72165 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0094 -0.3251 0.5887 7 6 4.1483 -2.4546 0.6011 8 8 3.4258 -3.4279 0.6409 9 7 5.4006 -2.5243 1.0944 10 6 5.8524 -3.7393 1.7770 11 1 5.4047 -4.6262 1.3287 12 6 5.5475 -3.6698 3.2942 13 7 6.5349 -4.5699 3.9187 14 6 6.3919 -5.1937 5.1292 15 1 5.4956 -5.0421 5.7124 16 6 7.3993 -6.0205 5.6072 17 7 8.4917 -6.2052 4.8966 18 14 7.2046 -6.8710 7.2589 19 1 5.8957 -6.5011 7.8550 20 1 7.2640 -8.3425 7.0680 21 1 8.2996 -6.4451 8.1671 22 6 7.6969 -4.6878 3.0258 23 6 7.4010 -3.8359 1.7736 24 1 7.7541 -4.3383 0.8730 25 8 7.9887 -2.5389 1.8940 26 6 4.1554 -1.0425 -1.4373 27 6 3.5330 -2.1448 -2.2966 28 6 3.7636 0.3253 -2.0002 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6958 -2.0073 0.0005 33 1 6.0014 -1.7685 1.0011 34 1 5.6776 -2.6516 3.6610 35 1 4.5347 -4.0195 3.4940 36 1 9.1959 -6.7826 5.2308 37 1 7.8404 -5.7299 2.7398 38 1 8.5891 -4.3127 3.5271 39 1 8.9557 -2.5440 1.8970 40 1 5.2406 -1.1425 -1.4480 41 1 2.4476 -2.0448 -2.2858 42 1 3.8963 -2.0562 -3.3203 43 1 3.8120 -3.1192 -1.8954 44 1 4.1124 1.1086 -1.3273 45 1 4.2205 0.4588 -2.9808 46 1 2.6792 0.3827 -2.0937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220804014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:45 Heat of formation + Delta-G solvation = -99.709989 kcal Electronic energy + Delta-G solvation = -27480.555964 eV Core-core repulsion = 23598.919282 eV Total energy + Delta-G solvation = -3881.636681 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73812 -39.30105 -38.01028 -36.08188 -34.87957 -34.12855 -33.30668 -31.71717 -30.19253 -28.73501 -27.63033 -27.25353 -26.33465 -24.37628 -21.53851 -21.02534 -20.47954 -20.02701 -19.72660 -17.93571 -17.20325 -17.03839 -16.54234 -16.09611 -15.89853 -15.14679 -14.83404 -14.77278 -14.47584 -14.04643 -13.94389 -13.74208 -13.29131 -13.20154 -12.87845 -12.72826 -12.64815 -12.49501 -12.36863 -12.25032 -12.07819 -11.51410 -11.35062 -11.19170 -11.03132 -10.98539 -10.88391 -10.56456 -10.50475 -10.13522 -10.03599 -9.86300 -9.80806 -9.37345 -9.17287 -8.77960 -8.68305 -6.91161 -5.78185 -3.11288 2.42069 2.60200 2.87252 3.37353 3.41362 3.44403 3.46492 4.39984 4.49477 4.58241 4.62840 4.74219 4.77819 4.97212 5.02763 5.17051 5.23865 5.31049 5.34044 5.44522 5.50315 5.55191 5.58503 5.66448 5.73713 5.80989 5.82361 5.88219 6.01189 6.09850 6.16611 6.23263 6.25840 6.51295 6.59132 6.86672 7.29111 7.35629 7.40869 7.64501 7.71626 8.02545 8.06034 8.16064 8.28838 9.14568 9.74572 10.38654 11.34090 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.003166 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.317166 B = 8841.633281 C = 9537.169721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.512 3.488 3 O -0.544 6.544 4 N -0.709 5.709 5 C 0.131 3.869 6 H 0.109 0.891 7 C 0.511 3.489 8 O -0.540 6.540 9 N -0.701 5.701 10 C 0.138 3.862 11 H 0.105 0.895 12 C 0.131 3.869 13 N -0.600 5.600 14 C -0.225 4.225 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.926 5.926 18 Si 0.915 3.085 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.154 3.846 23 C 0.068 3.932 24 H 0.061 0.939 25 O -0.567 6.567 26 C -0.100 4.100 27 C -0.147 4.147 28 C -0.135 4.135 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.411 0.589 33 H 0.409 0.591 34 H 0.026 0.974 35 H 0.043 0.957 36 H 0.252 0.748 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.380 0.620 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.227 10.646 -15.037 20.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.422 6.422 4 N -0.363 5.363 5 C 0.022 3.978 6 H 0.127 0.873 7 C 0.296 3.704 8 O -0.417 6.417 9 N -0.352 5.352 10 C 0.033 3.967 11 H 0.123 0.877 12 C 0.004 3.996 13 N -0.327 5.327 14 C -0.353 4.353 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.574 5.574 18 Si 0.745 3.255 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.029 3.971 23 C 0.008 3.992 24 H 0.079 0.921 25 O -0.374 6.374 26 C -0.120 4.120 27 C -0.205 4.205 28 C -0.193 4.193 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.248 0.752 33 H 0.245 0.755 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.228 0.772 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.823 10.719 -14.820 20.761 hybrid contribution 0.716 -0.825 0.913 1.424 sum -9.107 9.894 -13.907 19.345 Atomic orbital electron populations 1.21836 0.91552 1.04387 1.05232 1.20752 0.90583 0.83321 0.75382 1.90726 1.70477 1.31338 1.49640 1.45886 1.05755 1.09686 1.74986 1.20899 0.82252 0.96988 0.97685 0.87287 1.20480 0.82411 0.89578 0.77973 1.90690 1.56062 1.37398 1.57588 1.45718 1.13462 1.19127 1.56893 1.22390 0.92542 0.87473 0.94328 0.87701 1.21838 0.93843 0.94442 0.89464 1.44289 1.15685 1.53155 1.19591 1.19141 1.02293 1.20650 0.93220 0.90213 1.24797 0.96480 1.00197 0.99019 1.69920 1.07849 1.41889 1.37731 0.85995 0.77350 0.79082 0.83058 1.20446 1.21690 1.21729 1.21870 0.91350 0.97210 0.86711 1.23495 0.92051 0.84391 0.99237 0.92074 1.86245 1.24971 1.29105 1.97055 1.21471 1.00679 0.97079 0.92785 1.21826 1.01062 0.98254 0.99317 1.21842 1.01677 0.95495 1.00261 0.90467 0.88649 0.88788 0.75214 0.75536 0.95612 0.93850 0.93749 0.92618 0.92844 0.77183 0.89890 0.92438 0.92514 0.92156 0.91621 0.93157 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.14 10.39 36.00 0.37 -0.76 16 2 C 0.51 5.41 6.59 -10.99 -0.07 5.34 16 3 O -0.54 -7.50 14.14 5.56 0.08 -7.42 16 4 N -0.71 -7.49 4.00 -54.93 -0.22 -7.71 16 5 C 0.13 1.51 2.35 -69.08 -0.16 1.35 16 6 H 0.11 1.33 7.58 -51.93 -0.39 0.93 16 7 C 0.51 7.25 6.18 -10.98 -0.07 7.18 16 8 O -0.54 -9.12 15.28 5.56 0.08 -9.04 16 9 N -0.70 -10.20 5.17 -51.73 -0.27 -10.46 16 10 C 0.14 2.47 3.29 -65.78 -0.22 2.25 16 11 H 0.11 1.99 7.57 -51.93 -0.39 1.60 16 12 C 0.13 2.84 6.92 -2.50 -0.02 2.82 16 13 N -0.60 -15.27 3.40 -170.03 -0.58 -15.85 16 14 C -0.22 -6.29 10.28 -15.06 -0.15 -6.44 16 15 H 0.08 2.18 7.83 -52.48 -0.41 1.77 16 16 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 17 N -0.93 -26.55 10.31 55.49 0.57 -25.98 16 18 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.15 3.55 5.14 -3.07 -0.02 3.53 16 23 C 0.07 1.18 4.20 -24.90 -0.10 1.08 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 O -0.57 -8.73 12.14 -35.23 -0.43 -9.16 16 26 C -0.10 -1.01 2.73 -90.62 -0.25 -1.25 16 27 C -0.15 -1.44 8.79 37.16 0.33 -1.12 16 28 C -0.14 -1.36 7.68 37.16 0.29 -1.07 16 29 H 0.08 0.39 7.91 -51.93 -0.41 -0.03 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.41 4.11 7.58 -40.82 -0.31 3.80 16 33 H 0.41 5.35 7.57 -40.82 -0.31 5.04 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.06 1.41 7.38 -51.93 -0.38 1.03 16 38 H 0.05 1.35 7.43 -51.93 -0.39 0.96 16 39 H 0.38 4.51 9.12 45.56 0.42 4.93 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.54 7.46 -51.93 -0.39 0.15 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.69 7.15 -51.93 -0.37 0.32 16 44 H 0.06 0.73 7.53 -51.93 -0.39 0.34 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.59 6.20 -51.93 -0.32 0.27 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -33.18 367.11 -6.99 -40.17 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.57 Total: 10.33 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -0.17 Total: 12.55 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -0.49 Total: -60.00 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.26 Total: -25.62 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.18 -6.99 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220804014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.541 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds