Wall clock time and date at job start Tue Mar 31 2020 04:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.21279 * 120.00508 * 2 1 4 4 N 1.34776 * 119.99916 * 179.97438 * 2 1 3 5 5 C 1.46506 * 120.00172 * 179.97438 * 4 2 1 6 6 H 1.09001 * 109.46946 * 35.00163 * 5 4 2 7 7 C 1.50701 * 109.46925 * 155.00065 * 5 4 2 8 8 O 1.21280 * 120.00106 * 20.98268 * 7 5 4 9 9 N 1.34780 * 119.99685 * 200.97983 * 7 5 4 10 10 C 1.46502 * 119.99682 * 174.98563 * 9 7 5 11 11 H 1.08998 * 110.88947 * 34.30322 * 10 9 7 12 12 C 1.54909 * 111.00639 * 270.42068 * 10 9 7 13 13 N 1.47475 * 104.80929 * 204.95269 * 12 10 9 14 14 C 1.36932 * 125.62309 * 204.14569 * 13 12 10 15 15 H 1.08003 * 120.00821 * 359.93249 * 14 13 12 16 16 C 1.38818 * 119.99614 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00007 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99899 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47240 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46921 * 120.00127 * 18 16 14 21 21 H 1.48504 * 109.46949 * 239.99880 * 18 16 14 22 22 C 1.47020 * 108.72162 * 24.06962 * 13 12 10 23 23 C 1.54322 * 107.27272 * 358.97465 * 22 13 12 24 24 H 1.09000 * 110.71803 * 219.43920 * 23 22 13 25 25 O 1.42900 * 110.71859 * 96.17114 * 23 22 13 26 26 C 1.52997 * 109.47504 * 275.00341 * 5 4 2 27 27 C 1.53001 * 109.47124 * 305.61721 * 26 5 4 28 28 C 1.53003 * 109.46814 * 65.61189 * 26 5 4 29 29 H 1.09002 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47241 * 299.99917 * 1 2 3 31 31 H 1.09001 * 109.47564 * 60.00446 * 1 2 3 32 32 H 0.97002 * 120.00521 * 0.02562 * 4 2 1 33 33 H 0.97000 * 120.00303 * 355.26640 * 9 7 5 34 34 H 1.09005 * 110.36524 * 323.75341 * 12 10 9 35 35 H 1.08996 * 110.36815 * 86.07940 * 12 10 9 36 36 H 0.97001 * 120.00122 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.87999 * 239.55250 * 22 13 12 38 38 H 1.08997 * 109.87930 * 118.39681 * 22 13 12 39 39 H 0.96700 * 114.00097 * 66.47646 * 25 23 22 40 40 H 1.08994 * 109.47377 * 185.61432 * 26 5 4 41 41 H 1.09003 * 109.47412 * 59.99424 * 27 26 5 42 42 H 1.08995 * 109.47347 * 180.02562 * 27 26 5 43 43 H 1.09001 * 109.46716 * 300.00077 * 27 26 5 44 44 H 1.08998 * 109.47183 * 53.73084 * 28 26 5 45 45 H 1.09003 * 109.46407 * 173.72208 * 28 26 5 46 46 H 1.08998 * 109.47343 * 293.72165 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0094 -0.3251 0.5887 7 6 4.1483 -2.4546 0.6011 8 8 3.4258 -3.4279 0.6409 9 7 5.4006 -2.5243 1.0944 10 6 5.8524 -3.7393 1.7770 11 1 5.4047 -4.6262 1.3287 12 6 5.5475 -3.6698 3.2942 13 7 6.5349 -4.5699 3.9187 14 6 6.3919 -5.1937 5.1292 15 1 5.4956 -5.0421 5.7124 16 6 7.3993 -6.0205 5.6072 17 7 8.4917 -6.2052 4.8966 18 14 7.2046 -6.8710 7.2589 19 1 5.8957 -6.5011 7.8550 20 1 7.2640 -8.3425 7.0680 21 1 8.2996 -6.4451 8.1671 22 6 7.6969 -4.6878 3.0258 23 6 7.4010 -3.8359 1.7736 24 1 7.7541 -4.3383 0.8730 25 8 7.9887 -2.5389 1.8940 26 6 4.1554 -1.0425 -1.4373 27 6 3.5330 -2.1448 -2.2966 28 6 3.7636 0.3253 -2.0002 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6958 -2.0073 0.0005 33 1 6.0014 -1.7685 1.0011 34 1 5.6776 -2.6516 3.6610 35 1 4.5347 -4.0195 3.4940 36 1 9.1959 -6.7826 5.2308 37 1 7.8404 -5.7299 2.7398 38 1 8.5891 -4.3127 3.5271 39 1 8.9557 -2.5440 1.8970 40 1 5.2406 -1.1425 -1.4480 41 1 2.4476 -2.0448 -2.2858 42 1 3.8963 -2.0562 -3.3203 43 1 3.8120 -3.1192 -1.8954 44 1 4.1124 1.1086 -1.3273 45 1 4.2205 0.4588 -2.9808 46 1 2.6792 0.3827 -2.0937 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220804014.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:44 Heat of formation + Delta-G solvation = -126.532663 kcal Electronic energy + Delta-G solvation = -27481.719082 eV Core-core repulsion = 23598.919282 eV Total energy + Delta-G solvation = -3882.799800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.77968 -40.47190 -39.40763 -37.03377 -36.46555 -35.52956 -34.19944 -33.58952 -30.97218 -30.33713 -29.10528 -28.06714 -27.63489 -26.19041 -22.73382 -22.21052 -21.97343 -21.44666 -20.64312 -19.34969 -18.61828 -18.37406 -17.65971 -17.02993 -16.98672 -16.87304 -16.30530 -15.95151 -15.72102 -15.33355 -15.07589 -14.79815 -14.63519 -14.52784 -14.37598 -14.19537 -13.84502 -13.31099 -13.29878 -13.20431 -13.12114 -12.84239 -12.81897 -12.77623 -12.35950 -12.30326 -12.10986 -12.03572 -11.92169 -11.88494 -11.81892 -11.00620 -10.91437 -10.85758 -10.78433 -10.20111 -10.02099 -8.96325 -7.90136 -5.25983 1.38207 1.45385 1.45599 1.56173 1.67160 1.82622 2.40348 2.50022 3.15671 3.29155 3.46015 3.67831 3.74485 3.84087 3.89757 3.95187 3.99066 4.18337 4.25385 4.42396 4.47952 4.55115 4.62319 4.65466 4.69420 4.79569 4.80820 4.93369 4.98318 5.02261 5.07501 5.12596 5.30458 5.34202 5.40877 5.41479 5.44557 5.47038 5.64289 6.13147 6.47750 6.54041 6.86053 7.05416 7.11901 7.24159 7.69373 8.32660 9.19783 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.003166 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.317166 B = 8841.633281 C = 9537.169721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.509 3.491 3 O -0.579 6.579 4 N -0.707 5.707 5 C 0.137 3.863 6 H 0.105 0.895 7 C 0.514 3.486 8 O -0.566 6.566 9 N -0.692 5.692 10 C 0.153 3.847 11 H 0.097 0.903 12 C 0.132 3.868 13 N -0.621 5.621 14 C -0.247 4.247 15 H 0.077 0.923 16 C -0.060 4.060 17 N -0.947 5.947 18 Si 0.979 3.021 19 H -0.270 1.270 20 H -0.289 1.289 21 H -0.289 1.289 22 C 0.159 3.841 23 C 0.092 3.908 24 H 0.093 0.907 25 O -0.565 6.565 26 C -0.096 4.096 27 C -0.143 4.143 28 C -0.127 4.127 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.108 0.892 32 H 0.414 0.586 33 H 0.419 0.581 34 H 0.022 0.978 35 H 0.030 0.970 36 H 0.249 0.751 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.399 0.601 40 H 0.093 0.907 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 11.405 -16.230 22.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.298 3.702 3 O -0.459 6.459 4 N -0.362 5.362 5 C 0.028 3.972 6 H 0.122 0.878 7 C 0.301 3.699 8 O -0.445 6.445 9 N -0.344 5.344 10 C 0.047 3.953 11 H 0.114 0.886 12 C 0.005 3.995 13 N -0.348 5.348 14 C -0.376 4.376 15 H 0.095 0.905 16 C -0.253 4.253 17 N -0.596 5.596 18 Si 0.807 3.193 19 H -0.195 1.195 20 H -0.216 1.216 21 H -0.216 1.216 22 C 0.034 3.966 23 C 0.032 3.968 24 H 0.111 0.889 25 O -0.374 6.374 26 C -0.116 4.116 27 C -0.200 4.200 28 C -0.184 4.184 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.252 0.748 33 H 0.256 0.744 34 H 0.040 0.960 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.250 0.750 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.539 11.509 -16.037 22.376 hybrid contribution 0.918 -1.026 1.299 1.893 sum -9.620 10.483 -14.737 20.485 Atomic orbital electron populations 1.21876 0.88364 1.05998 1.06162 1.21451 0.92063 0.82514 0.74188 1.90712 1.71499 1.32421 1.51284 1.45949 1.05304 1.10085 1.74817 1.20837 0.83072 0.94823 0.98481 0.87754 1.20920 0.81760 0.90101 0.77159 1.90683 1.56647 1.38624 1.58498 1.45556 1.13987 1.18353 1.56508 1.21957 0.92970 0.88560 0.91844 0.88553 1.21888 0.92389 0.93218 0.92030 1.44566 1.17308 1.53434 1.19518 1.19448 1.02380 1.21203 0.94557 0.90549 1.25601 0.96313 1.00993 1.02395 1.70114 1.08254 1.42206 1.38984 0.85004 0.77512 0.77715 0.79038 1.19457 1.21554 1.21624 1.21733 0.89810 0.96633 0.88472 1.23132 0.91779 0.84488 0.97391 0.88904 1.86213 1.26791 1.27476 1.96873 1.21476 1.01254 0.97290 0.91556 1.21782 1.01284 0.97027 0.99900 1.21744 1.01205 0.94801 1.00688 0.88566 0.88047 0.87375 0.74782 0.74352 0.96002 0.95182 0.94125 0.95624 0.95622 0.75042 0.88910 0.92166 0.91077 0.93838 0.92956 0.91604 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.39 71.23 0.74 -1.11 16 2 C 0.51 10.07 6.59 87.65 0.58 10.65 16 3 O -0.58 -15.48 14.14 -3.03 -0.04 -15.53 16 4 N -0.71 -14.06 4.00 -446.10 -1.79 -15.84 16 5 C 0.14 3.00 2.35 44.24 0.10 3.10 16 6 H 0.10 2.44 7.58 -2.39 -0.02 2.42 16 7 C 0.51 14.03 6.18 87.66 0.54 14.58 16 8 O -0.57 -18.72 15.28 -3.03 -0.05 -18.77 16 9 N -0.69 -19.18 5.17 -435.96 -2.26 -21.44 16 10 C 0.15 5.37 3.29 46.38 0.15 5.52 16 11 H 0.10 3.61 7.57 -2.39 -0.02 3.59 16 12 C 0.13 5.74 6.92 86.85 0.60 6.34 16 13 N -0.62 -32.28 3.40 -691.86 -2.35 -34.63 16 14 C -0.25 -14.10 10.28 84.04 0.86 -13.24 16 15 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 16 C -0.06 -3.38 5.49 84.86 0.47 -2.92 16 17 N -0.95 -55.43 10.31 21.65 0.22 -55.20 16 18 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 22 C 0.16 7.44 5.14 86.73 0.45 7.88 16 23 C 0.09 3.09 4.20 31.78 0.13 3.23 16 24 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 25 O -0.56 -16.19 12.14 -148.98 -1.81 -18.00 16 26 C -0.10 -1.74 2.73 -10.79 -0.03 -1.77 16 27 C -0.14 -2.51 8.79 71.98 0.63 -1.88 16 28 C -0.13 -2.32 7.68 71.98 0.55 -1.77 16 29 H 0.10 0.71 7.91 -2.39 -0.02 0.69 16 30 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.41 7.75 7.58 -92.71 -0.70 7.04 16 33 H 0.42 10.10 7.57 -92.71 -0.70 9.40 16 34 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 37 H 0.03 1.34 7.38 -2.39 -0.02 1.32 16 38 H 0.03 1.33 7.43 -2.39 -0.02 1.31 16 39 H 0.40 8.53 9.12 -74.06 -0.68 7.86 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.02 7.46 -2.39 -0.02 1.00 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.04 0.92 7.15 -2.39 -0.02 0.91 16 44 H 0.05 1.11 7.53 -2.39 -0.02 1.09 16 45 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.05 0.94 6.20 -2.39 -0.01 0.92 16 Total: -1.00 -72.91 367.11 -1.32 -74.23 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: -1.07 Total: 28.78 kcal Atomic # 6 Polarization: 22.82 SS G_CDS: 5.78 Total: 28.61 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -6.17 Total: -127.12 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -1.90 Total: -52.30 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -72.91 -1.32 -74.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220804014.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.305 kcal (2) G-P(sol) polarization free energy of solvation -72.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds