Wall clock time and date at job start Tue Mar 31 2020 04:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 O 1.21277 * 119.99770 * 0.02562 * 5 2 1 7 7 N 1.34773 * 120.00130 * 179.97438 * 5 2 1 8 8 C 1.46497 * 120.00178 * 179.97438 * 7 5 2 9 9 C 1.50703 * 109.47337 * 180.02562 * 8 7 5 10 10 O 1.21278 * 119.99818 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99991 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99824 * 180.02562 * 11 9 8 13 13 H 1.08996 * 110.88758 * 31.11657 * 12 11 9 14 14 C 1.54921 * 111.00090 * 267.19570 * 12 11 9 15 15 N 1.47425 * 104.82821 * 204.91936 * 14 12 11 16 16 C 1.36939 * 125.64604 * 204.11008 * 15 14 12 17 17 H 1.08000 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99874 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00162 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99868 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47431 * 89.99558 * 20 18 16 22 22 H 1.48502 * 109.47134 * 209.99665 * 20 18 16 23 23 H 1.48503 * 109.47051 * 329.99464 * 20 18 16 24 24 C 1.47022 * 108.70396 * 24.12544 * 15 14 12 25 25 C 1.54318 * 107.27346 * 358.94068 * 24 15 14 26 26 H 1.08998 * 110.72331 * 219.44010 * 25 24 15 27 27 O 1.42901 * 110.86945 * 96.24012 * 25 24 15 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 37 37 H 0.97003 * 119.99866 * 0.02562 * 7 5 2 38 38 H 1.08993 * 109.47637 * 300.00542 * 8 7 5 39 39 H 1.09002 * 109.46725 * 60.00263 * 8 7 5 40 40 H 0.96999 * 119.99587 * 359.97438 * 11 9 8 41 41 H 1.08995 * 110.36555 * 323.75181 * 14 12 11 42 42 H 1.08996 * 110.36430 * 86.08058 * 14 12 11 43 43 H 0.97004 * 119.99760 * 179.97438 * 19 18 16 44 44 H 1.09008 * 109.88267 * 239.52078 * 24 15 14 45 45 H 1.08996 * 109.88318 * 118.36187 * 24 15 14 46 46 H 0.96706 * 114.00060 * 66.39017 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 8 1.2442 -1.1710 -2.0290 7 7 3.3574 -0.8332 -1.4441 8 6 3.8457 -1.5243 -2.6399 9 6 5.3527 -1.5242 -2.6400 10 8 5.9591 -0.9990 -1.7304 11 7 6.0266 -2.1078 -3.6509 12 6 7.4916 -2.1081 -3.6506 13 1 7.8800 -2.1283 -2.6324 14 6 8.0472 -0.8925 -4.4339 15 7 9.3890 -1.3113 -4.8783 16 6 10.4263 -0.4716 -5.1853 17 1 10.2957 0.5978 -5.1101 18 6 11.6452 -0.9950 -5.5941 19 7 11.8042 -2.2983 -5.6863 20 14 13.0599 0.1505 -6.0136 21 1 13.8636 0.4123 -4.7926 22 1 13.9197 -0.4822 -7.0459 23 1 12.5211 1.4320 -6.5357 24 6 9.4290 -2.7798 -4.9378 25 6 8.0475 -3.2946 -4.4816 26 1 8.1532 -4.1842 -3.8607 27 8 7.2072 -3.5620 -5.6060 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -0.2075 2.1393 37 1 3.9877 -0.4645 -0.8055 38 1 3.4828 -2.5520 -2.6393 39 1 3.4819 -1.0111 -3.5301 40 1 5.5415 -2.5281 -4.3781 41 1 7.4140 -0.6736 -5.2936 42 1 8.1181 -0.0217 -3.7822 43 1 12.6559 -2.6639 -5.9723 44 1 10.2040 -3.1569 -4.2704 45 1 9.6266 -3.1042 -5.9594 46 1 7.5108 -4.2954 -6.1584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220959500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:19 Heat of formation + Delta-G solvation = -104.044432 kcal Electronic energy + Delta-G solvation = -26551.931719 eV Core-core repulsion = 22670.107083 eV Total energy + Delta-G solvation = -3881.824637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.57103 -39.61923 -38.01044 -35.89776 -34.92430 -34.62727 -34.07968 -31.76511 -29.16232 -28.11946 -27.68586 -27.36695 -26.63196 -24.46156 -22.92123 -20.89927 -20.45514 -20.10953 -19.71513 -17.67215 -17.20254 -16.96944 -16.32309 -16.15664 -15.95912 -15.28374 -14.96675 -14.84685 -14.42643 -14.12135 -14.04877 -13.81720 -13.46669 -13.14582 -12.89526 -12.77433 -12.68156 -12.60396 -12.45979 -12.23697 -12.19527 -12.02489 -11.35060 -11.28519 -11.25081 -11.01819 -10.87635 -10.58448 -10.56365 -10.18154 -9.96363 -9.87721 -9.85239 -9.37028 -9.34456 -8.82329 -8.69522 -6.92350 -5.79008 -3.12290 2.42499 2.58444 2.70915 3.37014 3.38863 3.43037 3.44938 4.30876 4.40110 4.44637 4.49335 4.53849 4.74139 4.92116 5.14995 5.20729 5.22952 5.24171 5.27884 5.31074 5.39795 5.48812 5.49294 5.54811 5.60374 5.65008 5.77449 5.80432 5.87955 5.96987 5.98736 6.13256 6.14574 6.47521 6.57885 6.83972 7.27925 7.30196 7.39686 7.59806 7.69896 8.00514 8.01466 8.15161 8.24051 9.13591 9.73676 10.37607 11.33245 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.002528 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.018488 B =11074.205323 C =11742.253872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.524 3.476 6 O -0.542 6.542 7 N -0.715 5.715 8 C 0.099 3.901 9 C 0.505 3.495 10 O -0.543 6.543 11 N -0.700 5.700 12 C 0.138 3.862 13 H 0.106 0.894 14 C 0.132 3.868 15 N -0.600 5.600 16 C -0.225 4.225 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.926 5.926 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.154 3.846 25 C 0.068 3.932 26 H 0.061 0.939 27 O -0.568 6.568 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.412 0.588 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.410 0.590 41 H 0.026 0.974 42 H 0.044 0.956 43 H 0.253 0.747 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.164 -0.301 10.216 21.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.088 4.088 3 C -0.201 4.201 4 C -0.200 4.200 5 C 0.310 3.690 6 O -0.419 6.419 7 N -0.370 5.370 8 C -0.028 4.028 9 C 0.290 3.710 10 O -0.421 6.421 11 N -0.351 5.351 12 C 0.032 3.968 13 H 0.124 0.876 14 C 0.004 3.996 15 N -0.327 5.327 16 C -0.353 4.353 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.574 5.574 20 Si 0.746 3.254 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.029 3.971 25 C 0.008 3.992 26 H 0.079 0.921 27 O -0.374 6.374 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.251 0.749 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.246 0.754 41 H 0.044 0.956 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -19.371 0.218 10.444 22.008 hybrid contribution 1.361 -0.027 -0.655 1.510 sum -18.010 0.191 9.789 20.499 Atomic orbital electron populations 1.21663 0.91829 1.02852 1.02095 1.20805 0.98043 0.96543 0.93408 1.21895 1.01640 0.93549 1.02974 1.21893 1.01595 1.00560 0.95957 1.20604 0.81617 0.79328 0.87413 1.90694 1.55376 1.48751 1.47082 1.45748 1.07615 1.58610 1.25070 1.21063 0.91462 0.99930 0.90362 1.20466 0.89473 0.78548 0.82491 1.90698 1.69800 1.45318 1.36277 1.45678 1.07660 1.57210 1.24584 1.22414 0.77995 0.96430 0.99962 0.87574 1.21826 0.87826 0.94525 0.95397 1.44276 1.07683 1.01755 1.79023 1.19085 0.89179 0.89024 1.38046 0.90255 1.24799 0.97857 0.96167 1.01681 1.69911 1.24345 1.09547 1.53635 0.86062 0.82074 0.79534 0.77770 1.21515 1.21646 1.20648 1.21869 0.90015 0.84474 1.00787 1.23510 0.92779 0.95937 0.87007 0.92094 1.86237 1.52862 1.57378 1.40941 0.91893 0.91963 0.91921 0.91213 0.91772 0.91942 0.92005 0.91808 0.91207 0.74944 0.88434 0.88307 0.75388 0.95584 0.93779 0.93680 0.92589 0.92835 0.77151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 7.76 37.16 0.29 -0.73 16 2 C -0.08 -0.71 0.87 -155.66 -0.14 -0.85 16 3 C -0.14 -1.03 8.37 37.15 0.31 -0.72 16 4 C -0.14 -0.99 8.37 37.16 0.31 -0.68 16 5 C 0.52 5.97 6.48 -10.98 -0.07 5.90 16 6 O -0.54 -7.89 15.98 5.56 0.09 -7.80 16 7 N -0.72 -7.86 5.31 -61.47 -0.33 -8.19 16 8 C 0.10 1.10 6.15 -5.19 -0.03 1.07 16 9 C 0.51 6.98 7.90 -10.98 -0.09 6.90 16 10 O -0.54 -9.17 15.31 5.56 0.09 -9.08 16 11 N -0.70 -9.90 5.17 -51.73 -0.27 -10.17 16 12 C 0.14 2.43 3.31 -65.78 -0.22 2.21 16 13 H 0.11 1.99 7.54 -51.93 -0.39 1.60 16 14 C 0.13 2.80 6.92 -2.52 -0.02 2.78 16 15 N -0.60 -15.17 3.39 -170.07 -0.58 -15.74 16 16 C -0.23 -6.26 10.28 -15.06 -0.15 -6.41 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.93 -26.51 10.31 55.49 0.57 -25.94 16 20 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.15 3.52 5.14 -3.07 -0.02 3.51 16 25 C 0.07 1.17 4.19 -24.90 -0.10 1.06 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 O -0.57 -8.63 12.15 -35.23 -0.43 -9.05 16 28 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.47 7.56 -51.93 -0.39 0.07 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.41 4.41 6.27 -40.82 -0.26 4.15 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.41 5.12 7.58 -40.82 -0.31 4.81 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.06 1.41 7.38 -51.92 -0.38 1.03 16 45 H 0.05 1.34 7.44 -51.93 -0.39 0.96 16 46 H 0.38 4.46 9.12 45.56 0.42 4.88 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -33.42 373.95 -6.97 -40.40 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.71 Total: 9.29 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -0.02 Total: 13.70 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.60 Total: -60.03 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.25 Total: -25.93 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.42 -6.97 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220959500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.647 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds