Wall clock time and date at job start Tue Mar 31 2020 04:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 6 6 O 1.21277 * 119.99770 * 0.02562 * 5 2 1 7 7 N 1.34773 * 120.00130 * 179.97438 * 5 2 1 8 8 C 1.46497 * 120.00178 * 179.97438 * 7 5 2 9 9 C 1.50703 * 109.47337 * 180.02562 * 8 7 5 10 10 O 1.21278 * 119.99818 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99991 * 180.02562 * 9 8 7 12 12 C 1.46499 * 119.99824 * 180.02562 * 11 9 8 13 13 H 1.08996 * 110.88758 * 31.11657 * 12 11 9 14 14 C 1.54921 * 111.00090 * 267.19570 * 12 11 9 15 15 N 1.47425 * 104.82821 * 204.91936 * 14 12 11 16 16 C 1.36939 * 125.64604 * 204.11008 * 15 14 12 17 17 H 1.08000 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.38808 * 119.99874 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00162 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99868 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47431 * 89.99558 * 20 18 16 22 22 H 1.48502 * 109.47134 * 209.99665 * 20 18 16 23 23 H 1.48503 * 109.47051 * 329.99464 * 20 18 16 24 24 C 1.47022 * 108.70396 * 24.12544 * 15 14 12 25 25 C 1.54318 * 107.27346 * 358.94068 * 24 15 14 26 26 H 1.08998 * 110.72331 * 219.44010 * 25 24 15 27 27 O 1.42901 * 110.86945 * 96.24012 * 25 24 15 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 37 37 H 0.97003 * 119.99866 * 0.02562 * 7 5 2 38 38 H 1.08993 * 109.47637 * 300.00542 * 8 7 5 39 39 H 1.09002 * 109.46725 * 60.00263 * 8 7 5 40 40 H 0.96999 * 119.99587 * 359.97438 * 11 9 8 41 41 H 1.08995 * 110.36555 * 323.75181 * 14 12 11 42 42 H 1.08996 * 110.36430 * 86.08058 * 14 12 11 43 43 H 0.97004 * 119.99760 * 179.97438 * 19 18 16 44 44 H 1.09008 * 109.88267 * 239.52078 * 24 15 14 45 45 H 1.08996 * 109.88318 * 118.36187 * 24 15 14 46 46 H 0.96706 * 114.00060 * 66.39017 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7105 -1.2305 6 8 1.2442 -1.1710 -2.0290 7 7 3.3574 -0.8332 -1.4441 8 6 3.8457 -1.5243 -2.6399 9 6 5.3527 -1.5242 -2.6400 10 8 5.9591 -0.9990 -1.7304 11 7 6.0266 -2.1078 -3.6509 12 6 7.4916 -2.1081 -3.6506 13 1 7.8800 -2.1283 -2.6324 14 6 8.0472 -0.8925 -4.4339 15 7 9.3890 -1.3113 -4.8783 16 6 10.4263 -0.4716 -5.1853 17 1 10.2957 0.5978 -5.1101 18 6 11.6452 -0.9950 -5.5941 19 7 11.8042 -2.2983 -5.6863 20 14 13.0599 0.1505 -6.0136 21 1 13.8636 0.4123 -4.7926 22 1 13.9197 -0.4822 -7.0459 23 1 12.5211 1.4320 -6.5357 24 6 9.4290 -2.7798 -4.9378 25 6 8.0475 -3.2946 -4.4816 26 1 8.1532 -4.1842 -3.8607 27 8 7.2072 -3.5620 -5.6060 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6768 1.9562 0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 -1.7489 1.2492 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -0.2075 2.1393 37 1 3.9877 -0.4645 -0.8055 38 1 3.4828 -2.5520 -2.6393 39 1 3.4819 -1.0111 -3.5301 40 1 5.5415 -2.5281 -4.3781 41 1 7.4140 -0.6736 -5.2936 42 1 8.1181 -0.0217 -3.7822 43 1 12.6559 -2.6639 -5.9723 44 1 10.2040 -3.1569 -4.2704 45 1 9.6266 -3.1042 -5.9594 46 1 7.5108 -4.2954 -6.1584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220959500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:18 Heat of formation + Delta-G solvation = -131.292872 kcal Electronic energy + Delta-G solvation = -26553.113300 eV Core-core repulsion = 22670.107083 eV Total energy + Delta-G solvation = -3883.006218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 313.183 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.55710 -40.78474 -39.45668 -36.62704 -36.46345 -35.70682 -35.39034 -33.63379 -30.65655 -29.53131 -28.39125 -28.22731 -27.78605 -26.28880 -23.80942 -22.43771 -21.89985 -21.49503 -20.63690 -19.23906 -18.37862 -18.30460 -17.43411 -17.20028 -16.93648 -16.85925 -16.43800 -15.92270 -15.76108 -15.51505 -14.81206 -14.79395 -14.69694 -14.57999 -14.41914 -14.20412 -13.98350 -13.54199 -13.30718 -13.19027 -13.05692 -12.88106 -12.82407 -12.75319 -12.61718 -12.28988 -12.13961 -11.97059 -11.90016 -11.88355 -11.85813 -11.15244 -10.87921 -10.79037 -10.77044 -10.29509 -10.11259 -8.95842 -7.89758 -5.25554 1.41967 1.45496 1.46747 1.55238 1.57792 1.69832 2.35365 2.49140 3.16436 3.29556 3.47986 3.60257 3.71076 3.83685 3.87201 3.92287 3.93710 4.23822 4.25466 4.30321 4.37834 4.48937 4.65200 4.72129 4.72439 4.81789 4.83562 4.94830 4.96276 4.98768 5.02424 5.18610 5.26876 5.32737 5.33779 5.38011 5.40971 5.47224 5.64674 6.13664 6.42118 6.46606 6.85601 7.05692 7.10652 7.13504 7.70088 8.33140 9.20081 Molecular weight = 313.18amu Principal moments of inertia in cm(-1) A = 0.025219 B = 0.002528 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.018488 B =11074.205323 C =11742.253872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.140 4.140 5 C 0.521 3.479 6 O -0.577 6.577 7 N -0.714 5.714 8 C 0.106 3.894 9 C 0.511 3.489 10 O -0.573 6.573 11 N -0.690 5.690 12 C 0.152 3.848 13 H 0.097 0.903 14 C 0.131 3.869 15 N -0.622 5.622 16 C -0.246 4.246 17 H 0.077 0.923 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.979 3.021 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.272 1.272 24 C 0.159 3.841 25 C 0.091 3.909 26 H 0.092 0.908 27 O -0.564 6.564 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.415 0.585 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.422 0.578 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.249 0.751 44 H 0.025 0.975 45 H 0.026 0.974 46 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.460 -0.139 11.068 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.198 4.198 4 C -0.197 4.197 5 C 0.309 3.691 6 O -0.457 6.457 7 N -0.368 5.368 8 C -0.021 4.021 9 C 0.297 3.703 10 O -0.452 6.452 11 N -0.342 5.342 12 C 0.045 3.955 13 H 0.115 0.885 14 C 0.004 3.996 15 N -0.349 5.349 16 C -0.374 4.374 17 H 0.095 0.905 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.807 3.193 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.197 1.197 24 C 0.033 3.967 25 C 0.031 3.969 26 H 0.109 0.891 27 O -0.373 6.373 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.253 0.747 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.260 0.740 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -20.702 0.371 11.290 23.583 hybrid contribution 1.733 -0.057 -0.940 1.972 sum -18.969 0.314 10.349 21.611 Atomic orbital electron populations 1.21665 0.91561 1.02354 1.02678 1.20871 0.98219 0.97005 0.92496 1.21902 1.01527 0.92747 1.03670 1.21897 1.01547 1.00370 0.95920 1.21195 0.81219 0.78773 0.87905 1.90675 1.56098 1.50387 1.48503 1.45798 1.07717 1.58352 1.24976 1.21059 0.89018 1.01133 0.90921 1.20865 0.90457 0.77353 0.81580 1.90694 1.70679 1.46454 1.37396 1.45490 1.06046 1.57421 1.25243 1.21978 0.79980 0.94667 0.98835 0.88490 1.21892 0.86424 0.95825 0.95412 1.44559 1.08569 1.02717 1.79046 1.19406 0.90381 0.89571 1.38087 0.90478 1.25609 1.00160 0.97710 1.01971 1.70110 1.24515 1.10882 1.54185 0.85071 0.78895 0.77968 0.77334 1.21178 1.21703 1.19713 1.21727 0.92890 0.83449 0.98602 1.23140 0.89527 0.96522 0.87705 0.89063 1.86203 1.51861 1.58536 1.40702 0.93142 0.89520 0.92968 0.89099 0.91935 0.92701 0.92488 0.91872 0.89139 0.74671 0.86777 0.87359 0.74030 0.95678 0.95039 0.94136 0.95686 0.95633 0.75042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 7.76 71.98 0.56 -1.26 16 2 C -0.08 -1.25 0.87 -52.93 -0.05 -1.30 16 3 C -0.14 -1.77 8.37 71.98 0.60 -1.16 16 4 C -0.14 -1.65 8.37 71.98 0.60 -1.05 16 5 C 0.52 11.30 6.48 87.66 0.57 11.87 16 6 O -0.58 -16.38 15.98 -3.02 -0.05 -16.42 16 7 N -0.71 -14.73 5.31 -466.80 -2.48 -17.21 16 8 C 0.11 2.16 6.15 85.63 0.53 2.69 16 9 C 0.51 13.31 7.90 87.66 0.69 14.00 16 10 O -0.57 -18.77 15.31 -3.02 -0.05 -18.81 16 11 N -0.69 -18.22 5.17 -435.96 -2.25 -20.47 16 12 C 0.15 5.22 3.31 46.39 0.15 5.37 16 13 H 0.10 3.57 7.54 -2.39 -0.02 3.56 16 14 C 0.13 5.60 6.92 86.86 0.60 6.20 16 15 N -0.62 -31.99 3.39 -691.98 -2.35 -34.34 16 16 C -0.25 -13.91 10.28 84.03 0.86 -13.04 16 17 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 19 N -0.95 -55.43 10.31 21.65 0.22 -55.21 16 20 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 C 0.16 7.38 5.14 86.73 0.45 7.82 16 25 C 0.09 3.02 4.19 31.78 0.13 3.16 16 26 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 27 O -0.56 -15.84 12.15 -148.98 -1.81 -17.65 16 28 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.86 8.10 -2.38 -0.02 0.84 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.81 7.56 -2.39 -0.02 0.79 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.76 7.56 -2.39 -0.02 0.74 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.41 8.36 6.27 -92.71 -0.58 7.78 16 38 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.42 9.41 7.58 -92.71 -0.70 8.71 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.25 14.14 8.31 -92.70 -0.77 13.37 16 44 H 0.02 1.30 7.38 -2.38 -0.02 1.28 16 45 H 0.03 1.31 7.44 -2.39 -0.02 1.29 16 46 H 0.40 8.37 9.12 -74.05 -0.68 7.70 16 Total: -1.00 -73.38 373.95 -1.52 -74.90 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.96 Total: 27.31 kcal Atomic # 6 Polarization: 24.13 SS G_CDS: 6.17 Total: 30.29 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -6.86 Total: -127.23 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -1.90 Total: -52.89 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.38 -1.52 -74.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220959500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.394 kcal (2) G-P(sol) polarization free energy of solvation -73.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds